Shazia Ruybal-Pesántez
@drshaziaruybal.bsky.social
400 followers 140 following 9 posts
Genomic epidemiologist at Imperial College London @MRC-outbreak.bsky.social | Adjunct A/Prof @IMUSFQ Previously at @WEHI-research.bsky.social @burnetinstitute.bsky.social @rladiesmelb.bsky.social | 🇪🇨🇺🇸 in 🇬🇧 https://github.com/shaziaruybal
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Reposted by Shazia Ruybal-Pesántez
drshaziaruybal.bsky.social
🔔 Applications now open for our "Infectious Disease Modelling and Analytics for Pandemic Preparedness: A focus on Latin America (IDMAPP-LATAM)” short course in Quito, Ecuador in October 🤩🌎

☑️ Apply by 18th July. Limited spaces & scholarships available!
🔗 more info: mrc-ide.github.io/IDMAPP-LATAM
drshaziaruybal.bsky.social
📣 Apply to our workshop on “Malaria molecular surveillance study design” 🦟🧬 back by popular demand for a 2nd iteration 🤩

🗓️ 6-8 Nov, 2025
📍Toronto 🇨🇦
📖: sample size calculation, hypothesis testing, cluster-based & multiple endpoint study designs
🔗: apply by 31st July (forms.gle/DV61PYcxckrh...)
drshaziaruybal.bsky.social
🔔 Applications now open for our "Infectious Disease Modelling and Analytics for Pandemic Preparedness: A focus on Latin America (IDMAPP-LATAM)” short course in Quito, Ecuador in October 🤩🌎

☑️ Apply by 18th July. Limited spaces & scholarships available!
🔗 more info: mrc-ide.github.io/IDMAPP-LATAM
drshaziaruybal.bsky.social
Understanding the cause of recurrent #vivax malaria infections is key to evaluate treatment efficacy & describe transmission dynamics.

Excited to see this important work out where use genomic & analytical tools to explore this, always a pleasure to work with my good friend @jjrosados.bsky.social
jjrosados.bsky.social
This work began in 2019 during my PhD, with the help of @drshaziaruybal.bsky.social. After navigating a pandemic, finishing my PhD, and changing labs, I am pleased to share our work on a modest #ampseq panel for #P.vivax. This panel is designed to facilitate molecular corrections in clinical trials
Reposted by Shazia Ruybal-Pesántez
jjrosados.bsky.social
This work began in 2019 during my PhD, with the help of @drshaziaruybal.bsky.social. After navigating a pandemic, finishing my PhD, and changing labs, I am pleased to share our work on a modest #ampseq panel for #P.vivax. This panel is designed to facilitate molecular corrections in clinical trials
drshaziaruybal.bsky.social
Current efforts in malaria modelling and pop gen are largely separate endeavors due to complexities of the parasites’ genetics.

Here we review advances to understand strain hyperdiversity with potential to link these processes.

Super excited to see this out✨

www.sciencedirect.com/science/arti...
drshaziaruybal.bsky.social
In an increasingly divided world, “our call to action is both urgent and critical: join us in protecting global health and the partnerships that sustain it.”

Proud to have been a small part of this powerful collaborative opinion piece
Reposted by Shazia Ruybal-Pesántez
dionnecargy.bsky.social
What an amazing talk by @drshaziaruybal.bsky.social about the community-led project PGEforge, an open-access & central repo for tool landscaping, software standards, tutorials & analysis workflows!
I’m inspired by the power of #hackathons & look forward to the future of this project! #rstats #coding
rladiesmelb.bsky.social
🚨✨Happening now! Join us to learn more about PGEforge and see the application of epidemiological methods using R in action! Meet up link in the comments ✨ #RLadies #Genomics #Malaria
drshaziaruybal.bsky.social
Really looking forward to connecting with my fellow @rladiesmelb.bsky.social 💜

I’ll be talking about some of my recent work and the exciting results of a big community effort through the Plasmodium genomic epidemiology (PlasmoGenEpi) network! Tune in this Thursday ✨
rladiesmelb.bsky.social
⚠️ 🚨 UPDATE: THIS EVENT HAS BEEN RESCHEDULED from 27th Mar to 03 Apr

Join us for a talk by Dr. Shazia Ruybal-Pesántez on PGEforge: an open-access platform for malaria genomic data analysis. #RLadies #Bioinformatics #Malaria #Genomics #OpenScience #PGEforge
PGEforge: Towards an open analysis ecosystem for Plasmodium genomic epidemiology, Thu, Apr 3, 2025, 6:00 PM | Meetup
**\*\*UPDATE: THIS EVENT HAS BEEN RESCHEDULED from 27th Mar to 03 Apr\*\*** Major advances in sequencing technologies, bioinformatics pipelines, and data analysis tools ha
www.meetup.com
Reposted by Shazia Ruybal-Pesántez
appliedepi.bsky.social
🎉 R scholarship applications open on January 20!

If your team (government or nonprofit) works in applied epidemiology in a low- or middle-income country, you could get access to our Intro to R course and Support Desk! Details: appliedepi.org/training/sch...
#Rstats #epitwitter
drshaziaruybal.bsky.social
Starting 2025 with a new year gift! ✨

Amazing book with 90 authors from 26 countries 🌎🌍🌏

Very honored to have contributed to the chapter ‘Partnership-based approach to infectious disease research in Papua New Guinea‘ with colleagues in PNG & Australia 🇵🇬 🇦🇺

🔗 link.springer.com/book/10.1007...
drshaziaruybal.bsky.social
Really interesting thread @seabbs.bsky.social ! Would you be up for posting this (or something along these lines) on the @appliedepi.bsky.social community forum? I think there could be a lot of useful insights from our community. Link here: community.appliedepi.org
Applied Epi Community
A space for mutual assistance for topics in applied epidemiology and public health
community.appliedepi.org
drshaziaruybal.bsky.social
TIL - how did I not know this!? 🤯
Reposted by Shazia Ruybal-Pesántez
rladiesmelb.bsky.social
A starter pack of the R-Ladies Melbourne community, friends, alum, speakers and #rstats accounts! 💜

go.bsky.app/8h9PWdv
Reposted by Shazia Ruybal-Pesántez
anne-cori.bsky.social
Interested in Lassa fever? Hear @drpdoohan.bsky.social summarise our Lassa review, recently published in @thelancet.bsky.social Global Health and part of our wider multi-pathogen review project: bit.ly/imperial-PERG
Reposted by Shazia Ruybal-Pesántez
adamjkucharski.bsky.social
As health agencies and researchers try to piece together the situation in DRC, my piece from earlier this year on the predictable task that eats up valuable time in outbreaks:

kucharski.substack.com/p/the-predic...
The predictable task that eats up valuable time in outbreaks
How can we avoid a monumental duplication of effort?
kucharski.substack.com
Reposted by Shazia Ruybal-Pesántez
zulmacucunuba.bsky.social
Bueno, lo prometido es deuda. Va una primera versión de #CientificosLatam en múltiples áreas.

Si alguien quisiera que su contacto fuera agregado, por favor dejarlo en comentarios🥂

go.bsky.app/2oEhFSh