Elise Kerdoncuff
@ekerdoncuff.bsky.social
130 followers 140 following 16 posts
Postdoc in population genetics at Institut Pasteur, Paris, France. https://ekerdoncuff.github.io/
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Reposted by Elise Kerdoncuff
johnhawks.net
The genetics of South Asia are coming into focus, helping reveal how fast the avalanche of modern humans got going. This region has more Neanderthal genetic variation than any other, and a unique component of Denisovan ancestry never seen before.

www.johnhawks.net/p/deep-histo...
Deep history from the genomes of India
People carrying Neanderthal mixture entered the subcontinent after 50,000 years ago, meeting Denisovans
www.johnhawks.net
Reposted by Elise Kerdoncuff
popgroup2026.bsky.social
Exciting news!
The next #PopGroup meeting will take place in Lille 🍟, France, 7–9 January 2026 – just 1 hour by train from London, Brussels, and Paris.

This year, PopGroup will also host ALPHY, the annual meeting of Evolutionary Genomics.

More info: populationgeneticsgroup.org.uk

See you there !
Population Genetics group 59
populationgeneticsgroup.org.uk
Reposted by Elise Kerdoncuff
yun-s-song.bsky.social
SINGER, our ARG inference method, is finally published and freely available online:

doi.org/10.1038/s415...

It was a long journey – 16 months from initial submission to acceptance. Is it just me, or has peer review gotten more arduous lately? 4+ rounds of review isn't so unusual these days...
Robust and accurate Bayesian inference of genome-wide genealogies for hundreds of genomes - Nature Genetics
SINGER is a method for creating ancestral recombination graphs to understand the genealogical history of genomes. The method has increased speed, and thus scalability, without sacrificing accuracy.
doi.org
Reposted by Elise Kerdoncuff
mollyschumer.bsky.social
Our review on the last decade+ of hybrid incompatibility research is now out! www.sciencedirect.com/science/arti...

Original thread here: bsky.app/profile/moll...
Reposted by Elise Kerdoncuff
qb3-berkeley.bsky.social
New research from Priya Moorjani's lab offers insights into India’s genomic legacy.

Postdocs @lauritsskov.bsky.social and @ekerdoncuff.bsky.social traced Indian's ancestry to three main sources. Read the findings in this story by grad student Jules Perez: bit.ly/3IK46vh
An illustration of a DNA strand surrounded by faces. Artist: Saurabh Singh.
Reposted by Elise Kerdoncuff
natureportfolio.nature.com
It’s been 25 years since the UCSC Genome Browser launched. Nature profiles how the website remains an essential tool for navigating the genome and understanding its structure, function, and clinical impact. #Academicsky 🧬 🧪
’We couldn’t live without it’: the UCSC Genome Browser turns 25
After a quarter of a century, the website remains an essential tool for navigating the genome and understanding its structure, function and clinical impact.
go.nature.com
Reposted by Elise Kerdoncuff
cellpress.bsky.social
Genomes from people across modern-day India shed light on 50,000 years of evolutionary history.
http://dlvr.it/TLbY4F

@ekerdoncuff.bsky.social & colleagues
@[email protected]
Reposted by Elise Kerdoncuff
ucberkeleyofficial.bsky.social
A new analysis of Indian genomes helps untangle these groups’ complex evolutionary history, uncovering a 50,000-year history of genetic mixing and population bottlenecks that shaped genetic variation, health and disease in South Asia. news.berkeley.edu/2025/06/26/s...
Scientists complete the most thorough analysis yet of India's genetic diversity - Berkeley News
A comparison of more than 2,700 complete genomes from South Asians uncovers a wealth of ancient and recent diversity and genetic links to disease.
news.berkeley.edu
ekerdoncuff.bsky.social
Check out our dive into 50,000 years of Indian genetic history!🇮🇳
🧬~2,700 genomes
🦴Neanderthal/Denisovan DNA
🌾Hunter-gatherer, Iranian farmer & Steppe ancestry
🩺Health-linked, population-specific variants

@lauritsskov.bsky.social & Priya Moorjani
#Genomics #India #HumanEvolution #PopulationGenetics
Reposted by Elise Kerdoncuff
ryangutenkunst.bsky.social
Packed house at today’s GHIST kickoff meeting. Pop gen folks, join the competition to learn, have fun, and help our community. ghi.st (Thanks to @drk-lo.bsky.social for the pic.) #Evol2025
Attendees of GHIST kick off workshop.
Reposted by Elise Kerdoncuff
gcbias.bsky.social
The university of California is a powerhouse of innovation, healthcare, and social mobility for California and the US.
Federal investment in UC research Federal funds are the university’s single most important source of support for research, accounting for more than half of UC’s total research awards.

Many of California’s leading industries grew from UC research, including biotechnology, computing, semiconductors, telecommunications and
agriculture.

Providing health care at UC University of California Health (UC Health) is one of the nation’s largest public academic health systems, serving
as a critical part of the California safety net.

UC trains approximately 36% of the medical residents in California
Reposted by Elise Kerdoncuff
lauritsskov.bsky.social
We ( @zeniabaek.bsky.social @moicoll.bsky.social and @asgerhobolth.bsky.social ) present a new cool way to visualize the optimal trade off for hmm decoding called Artemis plots!
arxiv.org/pdf/2504.15156
www.biorxiv.org/content/10.1...
Reposted by Elise Kerdoncuff
martamlahr.bsky.social
Why do Polynesians gave high risk of metabolic disease? Dang Liu tests the thrifty genotype vs population adaprive patterns (considering % Austronesian & Papuan ancestries), demographics (strong bottleneck in Eastern Polynesians!). Results: both!! BMI thrifty, HDL & others under drift & more!! 🤩
Reposted by Elise Kerdoncuff
standupforscience.bsky.social
TODAY IS THE DAY! 🧪☀️⬇️

Join us at the Lincoln Memorial or your local site to Stand Up for Science!
Flyer for stand up for science--more information available at www.standupforscience2025.org
ekerdoncuff.bsky.social
Had the opportunity to present my work on Lactase Persistence in South Asia, in collaboration with Meaghan Maroon, at #probgen25! Excited to share our findings with this amazing community!
Reposted by Elise Kerdoncuff
maudtenaillon.bsky.social
🚨 Applications Open! 🎓
The Master 2 EvoGEM offers training in computational & mathematical modelling to interpret evolutionary mechanisms from genomic data.
📍Taught in English in Paris (MNHN, PSL, Sorbonne Univ., Univ. Paris-Cité & Paris-Saclay)
🔹 Research in leading labs
🔗 Apply now: evogem.fr
Inter-institutional Master in evolutionary genetics
evogem.fr
Reposted by Elise Kerdoncuff
shahanmemon.bsky.social
How important are your #postdoc years in the likelihood of you staying & succeeding in #academia?

In our newly published paper in @pnas.org, "Postdoc Publications and Citations Link to Academic Retention and Faculty Success," we study the journey of #CareerSuccess of ~45,000 #postdocs.

🧵1/7
ekerdoncuff.bsky.social
Proud to see our work cited as part of these big discoveries ! 🧬🌏
johnhawks.net
Rapid natural selection across the last 5000 years, a complex speciation to kick off the hominin lineage, and a single pulse of Neandertal ancestry into recent people around 47,000 years ago. Those are some of the big stories coming from DNA this year.

johnhawks.net/weblog/top-1...
Top 10 discoveries about ancient people from DNA in 2024
New resolution is emerging of some events in ancient human populations, and a clearer view of some parts of the genome.
johnhawks.net
Reposted by Elise Kerdoncuff
invertevoeco.bsky.social
Evolution instructors! I'm adding 'Make an evolution meme' to the extra credit opportunities in my class this semester. I know I've seen some great examples of student-generated memes on here - can you share some of your favorites so I can give them examples of what I'm looking for?
Reposted by Elise Kerdoncuff
hringbauer.bsky.social
PhD opportunity in computational population genetics at @MPI_EVA_Leipzig:
Join our fully funded project to develop IBD-segment tools, connecting high-quality genomes from 500 Black Death victims to modern Europeans. 🌍💻🧬
Please spread the word! 📢🙌 #aDNA #PopGen

www.eva.mpg.de/de/karriere/...
Sketch of IBD segments linking Medieval genomes from the Black Death (1350 CE) to modern Europeans. Logo of ERC-funded research.
Reposted by Elise Kerdoncuff
lauritsskov.bsky.social
Very excited (and a bit nervous) to announce that I will be hiring two Postdocs for my new group(!) in Copenhagen to study the Neanderthal and Denisovan DNA which survives in present-day humans. Retweet will be much appreciated :)

Link for application:
candidate.hr-manager.net/ApplicationI...
ekerdoncuff.bsky.social
Join Harald Ringbauer and I to learn about "Haplotype-based methods and frameworks for inference of evolutionary history" at #SMBE2024 in Puerto Vallarta, Mexico, July 7-11!
🧬🌐💻
Invited Speakers: @amygoldberg.bsky.social and Pier Palamara
Submit your abstracts by March 15th at smbe2024.org #SMBE24
ekerdoncuff.bsky.social
👏👏👏 This work was a collaborative effort and would not be possible without all the help from everyone involved:  Nick Patterson, Wei Zhao, Yuk Yee Lueng, Gerard D. Schellenberg Jennifer A. Smith, Sharmistha Dey, Andrea Ganna, AB Dey, Sharon L.R. Kardia, Jinkook Lee. [11/11]