EuBIC-MS
@eubic-ms.org
670 followers 40 following 14 posts
European Bioinformatics Community for Mass Spectrometry @eupaproteomics.bsky.social initiative #massspec #proteomics #metabolomics
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eubic-ms.org
Last week we had our yearly organizational meeting, this time in Vienna, Austria. We had 3 great days discussing the activities of the past year and planning the upcoming ones. Thanks to everyone who joined and contributed to a great meeting!
eubic-ms.org
Today at 16:00 CEST we're having our monthly online meeting to discuss our projects and oncoming events. Everyone is welcome to join!

If you're new to EuBIC-MS, join 15 mins earlier today for a quick tour of EuBIC-MS!

To join, go to eubic-ms.org/become-a-mem... and find the meeting URL on Slack.
eubic-ms.org
Marie Locard-Paulet presenting the EuBIC-MS #ProteoBench project at the #EuPA2025 conference.

👉 Learn more about our open proteomics software benchmarking platform at proteobench.readthedocs.io.

#Proteomics #Bioinformatics #Benchmarking
Conference stage with Marie Locard-Paulet, the chairs, and the opening slide in the background.
eubic-ms.org
Big thanks to our three speakers for their great talks: Julian Uszkoreit (@uszkoreitju.bsky.social), Yannic Chen, and Harikrishnan Ramadasan (@harirmds.bsky.social).

Also a big thanks to everyone who attended and participated in the discussion session!

#EuPA2025 @eupaproteomics.bsky.social
eubic-ms.org
Join us in Saint-Malo for the #EuBIC-MS session at #EuPA2025!
After a short introduction, we have three exciting talks lined up, as well as an interactive discussion on open issues in computational proteomics.

@eupaproteomics.bsky.social @uszkoreitju.bsky.social @harirmds.bsky.social
EuBIC-MS session at EuPA 2025
Tuesday June 17, 10:15 - 12:00, Room Vauban 1

Ralf Gabriels
Introducing EuBIC-MS
10:15 - 10:30

Julian Uszkoreit
O85 - What can we gain - a comparison of common search engines and post-processing methods
10:30 - 10:45

Yannic Chen
O84 - Benchmarking Database Search Engines for DDA-based Immunopeptidomics
10:45 - 11:00

Harikrishnan Ramadasan
O86 - Bridging expert curation and LLMs for automated metadata extraction in lesSDRF 2.0
11:00 - 11:15

Interactive discussions on open challenges in computational proteomics
11:15 - 12:00
Reposted by EuBIC-MS
jorainer.bsky.social
And big thanks also to the @eubic-ms.org hackathon team contributing to our #SpectriPy package github.com/RforMassSpec... !

Next on the list submission of the package to 👉 @bioconductor.bsky.social
Reposted by EuBIC-MS
ypriverol.bsky.social
Thanks to the incredible work of @enryh.bsky.social, now #quantms is part of #ProteoBench. You can benchmark DDA LFQ data within ProteoBench using proteomicLFQ (#OpenMS algorithm) using quantms and ProteoBench. #OpenData #OpenSource @eubic-ms.org 🔥🚀

proteobench.readthedocs.io/en/stable/av...
DDA quantification - precursor ions — ProteoBench documentation
proteobench.readthedocs.io
eubic-ms.org
This year's Developers Meeting ended less than a month ago, but we are already looking for a location for the next one! Would you like to propose a location for the Developers Meeting in 2027?
Make your suggestion here before the 7th of March:
github.com/EuBIC/EuBIC2...
eubic-ms.org
The EuBIC-MS Developers Meeting 2025 was a blast! Thanks to all participants, hackathon organizers, EuPA, and especially our sponsors: @denbi.bsky.social, @matrixscience.bsky.social, and @biognosys.bsky.social.
#EuBIC2025
Group picture of all EuBIC2025 participants in front of snowy pine trees. Captioned "EuBIC-MS Developers Meeting 2025, Neustift Abbey, Italy, 2-7 February 2025, Sponsors: de.NBI, Matrix Science, and Biognosys. Powered by EuPA"
Reposted by EuBIC-MS
denbi.bsky.social
@denbi.bsky.social supports this week the @eubic-ms.org Developer Meeting 2025 at Abbey of Neustift, Vahrn (IT).
eubic-ms.org
The EUBIC-MS Developers Meeting 2025 in Brixen is off to a great start with keynotes by Pavel Sinitcyn, Katerina Nastou, and @willfondrie.com.

#EuBIC2025
Audience in lecture hall Pavel Sinitcyn presenting Katerina Nastou presenting Will Fondrie presenting
Reposted by EuBIC-MS
tineclaeys.bsky.social
🚨 Big news, #TeamMassSpec! 🚨
How do we unlock proteomics data reuse, tackle metadata challenges, and harness public (clinical) data for AI?
Find out at HUPO-PSI Spring Meeting 2025!

📅 March 31 – April 3, 2025
📍 Tübingen, Germany
(1/4)
HUPO-PSI Spring Meeting 2025 – HUPO Proteomics Standards Initiative
psidev.info
Reposted by EuBIC-MS
willfondrie.com
In hopes that I won’t get lost en route to the EuBIC-MS developers meeting in Feb, I’ve started learning Italian with Duolingo. 🇮🇹

Fantastico! Un cornetto e un caffè, per favore 🥐 ☕️

I’m super excited and I think I have the essentials learned 😂
eubic-ms.org
Have you ever noticed how benchmarking #proteomics data analysis can be a wild west?

EuBIC-MS community members did, and started #ProteoBench: An open platform for comparing proteomics data analysis workflows.

Learn more at the webinar (27 Feb, 18h CET) Register here: bit.ly/3SfS4Lf
eubic-ms.org
A first time for a EuBIC-MS event: The live recording of a podcast. @benneely.com and @proteomicsnews.bsky.social just recorded an episode of The Proteomics Show live from Winterberg at the #EuBIC2024 Winter School🎙️❄️

Listen now: podcasters.spotify.com/pod/show/the...
Ben, Ben, and guest Micha recording the podcast Recording the podcast before a live audience. Thumbnail for The Proteomics Show, Live from Winterberg
Reposted by EuBIC-MS
benneely.com
Not sure how much of EuBIC is actually on Bluesky, but @magnuspalmblad.bsky.social has a feed for the conference to capture the hashtag. Get it!
eubic-ms.org
After the educational day with hands-on tutorials, day 2 of the #EuBIC2024 Winter School started with great keynotes by Thomas Burger, Cecilia Lindskog, and @benneely.com.
Thomas Burger presents remotely at the EuBIC-MS Winter School 2024 Cecilia Lindskog presenting at the EuBIC-MS Winter School 2024 Ben Neely presenting at the EuBIC-MS Winter School 2024
eubic-ms.org
Today is the last day to:
🐦 Register with extended early bird
📃 Submit an abstract for a flash talk / poster
for the #EuBIC2024 Winter School on computational mass spectrometry.

Check out the full program on eubic-ms.org/events/2024-...

#teammassspec #proteomics #compms
EuBIC Winter School 2024

Five days of keynotes, workshops, flash talks, posters, and more on computational mass spectrometry
15-19 January 2024 @ Winterberg, Germany
https://www.eubic-ms.org/events/2024-winter-school

Keynote speakers: Ben Neely, Cecilia Lindskog, Dirk Valkenborg, Juan Antonio Vizcaino, Laurent Gatto, Nils Hoffmann, Niveda Sundararaman, Robbin Bouwmeester, Thomas Burger, Wen-Feng Zeng
Special guest: Ben Orsburn
Sponsors: MSAID, Evosep, Matrix Science, Bioinformatics Solutions Inc
Powered by: EuPA, PROTrEIN, de.NBI
eubic-ms.org
Only four more days for early bird registration for the #EuBIC2024 Winter School ⏲️

Registration info on eubic-ms.org/events/2024-...
EuBIC Winter School 2024

Five days of keynotes, workshops, flash talks, posters, and more on computational mass spectrometry
15-19 January 2024 @ Winterberg, Germany
https://www.eubic-ms.org/events/2024-winter-school

Keynote speakers: Ben Neely, Cecilia Lindskog, Dirk Valkenborg, Juan Antonio Vizcaino, Laurent Gatto, Nils Hoffmann, Niveda Sundararaman, Robbin Bouwmeester, Thomas Burger, Wen-Feng Zeng
Special guest: Ben Orsburn
Sponsors: MSAID, Evosep, Matrix Science, Bioinformatics Solutions Inc
Powered by: EuPA, PROTrEIN, de.NBI