de.NBI & ELIXIR Germany
@denbi.bsky.social
The de.NBI network provides bioinformatics services and comprehensive compute resources to researchers in the life sciences and biomedicine in Germany and Europe. Since August 2016 the German Node of ELIXIR, ELIXIR Germany, is run by de.NBI partners.
Reposted by de.NBI & ELIXIR Germany
The ITCR Training Network (ITN) www.itcrtraining.org develops training materials for informatics and research.
We have a short survey ~3-9 min about your experience & preferences for learning as a researcher. Previous engagement not required!
xiar7j-itn.shinyapps.io/itn_follow_up/
We have a short survey ~3-9 min about your experience & preferences for learning as a researcher. Previous engagement not required!
xiar7j-itn.shinyapps.io/itn_follow_up/
November 18, 2025 at 6:03 PM
The ITCR Training Network (ITN) www.itcrtraining.org develops training materials for informatics and research.
We have a short survey ~3-9 min about your experience & preferences for learning as a researcher. Previous engagement not required!
xiar7j-itn.shinyapps.io/itn_follow_up/
We have a short survey ~3-9 min about your experience & preferences for learning as a researcher. Previous engagement not required!
xiar7j-itn.shinyapps.io/itn_follow_up/
🧬🌱 IPB Halle and @sneumann.bsky.social lab seek a Research Associate in Computational Metabolomics (E13 TV-L, full-time, m/f/d)!
#Bioinformatics, R, Python, stats & #metabolomics. Join an international team!
Apply by 22 Dec 2025
🔗 More: www.denbi.de/de-nbi-jobs-... #jobs #openjobs #jobseaker
#Bioinformatics, R, Python, stats & #metabolomics. Join an international team!
Apply by 22 Dec 2025
🔗 More: www.denbi.de/de-nbi-jobs-... #jobs #openjobs #jobseaker
November 24, 2025 at 12:43 PM
🧬🌱 IPB Halle and @sneumann.bsky.social lab seek a Research Associate in Computational Metabolomics (E13 TV-L, full-time, m/f/d)!
#Bioinformatics, R, Python, stats & #metabolomics. Join an international team!
Apply by 22 Dec 2025
🔗 More: www.denbi.de/de-nbi-jobs-... #jobs #openjobs #jobseaker
#Bioinformatics, R, Python, stats & #metabolomics. Join an international team!
Apply by 22 Dec 2025
🔗 More: www.denbi.de/de-nbi-jobs-... #jobs #openjobs #jobseaker
November 24, 2025 at 9:30 AM
Reposted by de.NBI & ELIXIR Germany
Reposted by de.NBI & ELIXIR Germany
📣 Open position: We are looking for a new #ScientificLead for the #SILVA database 🧬🖥️
You will be responsible for guiding the development of this important resource and for curating the SILVA taxonomy🌳and more!
👉 www.dsmz.de/dsmz/career/...
Read and share ‼️
#sciencejobs 🦠🧪 #career #taxonomy
You will be responsible for guiding the development of this important resource and for curating the SILVA taxonomy🌳and more!
👉 www.dsmz.de/dsmz/career/...
Read and share ‼️
#sciencejobs 🦠🧪 #career #taxonomy
November 22, 2025 at 3:36 PM
📣 Open position: We are looking for a new #ScientificLead for the #SILVA database 🧬🖥️
You will be responsible for guiding the development of this important resource and for curating the SILVA taxonomy🌳and more!
👉 www.dsmz.de/dsmz/career/...
Read and share ‼️
#sciencejobs 🦠🧪 #career #taxonomy
You will be responsible for guiding the development of this important resource and for curating the SILVA taxonomy🌳and more!
👉 www.dsmz.de/dsmz/career/...
Read and share ‼️
#sciencejobs 🦠🧪 #career #taxonomy
🎉 The de.NBI & ELIXIR-DE All Hands Meeting 2025 kicked off in Berlin!
We celebrated 10 years of de.NBI with a birthday cake 🎂, welcomed new Associated Partners, and connected with 140+ participants. Stay tuned for more! #deNBI2025
We celebrated 10 years of de.NBI with a birthday cake 🎂, welcomed new Associated Partners, and connected with 140+ participants. Stay tuned for more! #deNBI2025
November 20, 2025 at 3:26 PM
🎉 The de.NBI & ELIXIR-DE All Hands Meeting 2025 kicked off in Berlin!
We celebrated 10 years of de.NBI with a birthday cake 🎂, welcomed new Associated Partners, and connected with 140+ participants. Stay tuned for more! #deNBI2025
We celebrated 10 years of de.NBI with a birthday cake 🎂, welcomed new Associated Partners, and connected with 140+ participants. Stay tuned for more! #deNBI2025
Reposted by de.NBI & ELIXIR Germany
Happy to be back i the lovelyn @denbi.bsky.social network together with @lipidomics.bsky.social as associate partners. Enjoying the annual all-hands meeting 2025 in Berlin.
November 20, 2025 at 9:23 AM
Happy to be back i the lovelyn @denbi.bsky.social network together with @lipidomics.bsky.social as associate partners. Enjoying the annual all-hands meeting 2025 in Berlin.
🧬✨ Reminder: Intro to Spatial #Transcriptomics Webinar!
Nov 20, 2025 · 13:00 CET · With @ghga.bsky.social Florian Heyl
Get started with image-based spatial omics & key preprocessing steps.
Free, in English—registration required! More information: www.denbi.de/de-nbi-event...
#SpatialOmics #Webinar
Nov 20, 2025 · 13:00 CET · With @ghga.bsky.social Florian Heyl
Get started with image-based spatial omics & key preprocessing steps.
Free, in English—registration required! More information: www.denbi.de/de-nbi-event...
#SpatialOmics #Webinar
November 19, 2025 at 8:31 AM
🧬✨ Reminder: Intro to Spatial #Transcriptomics Webinar!
Nov 20, 2025 · 13:00 CET · With @ghga.bsky.social Florian Heyl
Get started with image-based spatial omics & key preprocessing steps.
Free, in English—registration required! More information: www.denbi.de/de-nbi-event...
#SpatialOmics #Webinar
Nov 20, 2025 · 13:00 CET · With @ghga.bsky.social Florian Heyl
Get started with image-based spatial omics & key preprocessing steps.
Free, in English—registration required! More information: www.denbi.de/de-nbi-event...
#SpatialOmics #Webinar
Reposted by de.NBI & ELIXIR Germany
We are looking for undergrads to visit us over the next summer!
If you study in the UK, USA, or Canada, you might be eligible for the DAAD-RISE program 🇩🇪🧬
Learn more 👉 www.izmb.uni-bonn.de/en/pbb/news#DR
Do excellent science in Bonn next summer!
@puckerlab.bsky.social @unibonn.bsky.social
If you study in the UK, USA, or Canada, you might be eligible for the DAAD-RISE program 🇩🇪🧬
Learn more 👉 www.izmb.uni-bonn.de/en/pbb/news#DR
Do excellent science in Bonn next summer!
@puckerlab.bsky.social @unibonn.bsky.social
November 18, 2025 at 10:35 AM
We are looking for undergrads to visit us over the next summer!
If you study in the UK, USA, or Canada, you might be eligible for the DAAD-RISE program 🇩🇪🧬
Learn more 👉 www.izmb.uni-bonn.de/en/pbb/news#DR
Do excellent science in Bonn next summer!
@puckerlab.bsky.social @unibonn.bsky.social
If you study in the UK, USA, or Canada, you might be eligible for the DAAD-RISE program 🇩🇪🧬
Learn more 👉 www.izmb.uni-bonn.de/en/pbb/news#DR
Do excellent science in Bonn next summer!
@puckerlab.bsky.social @unibonn.bsky.social
Reposted by de.NBI & ELIXIR Germany
📣 Workshop announcement: This year's #SILVA 🧬 online workshop will take place on 🗓️ 11th December, at 3pm CET.
The #SILVA team will inform about the upcoming release, the new website design 🖥️, and more!
Write to [email protected] to receive the Zoom login details
#science #FAIRdata 🧫🧪
The #SILVA team will inform about the upcoming release, the new website design 🖥️, and more!
Write to [email protected] to receive the Zoom login details
#science #FAIRdata 🧫🧪
November 17, 2025 at 2:51 PM
📣 Workshop announcement: This year's #SILVA 🧬 online workshop will take place on 🗓️ 11th December, at 3pm CET.
The #SILVA team will inform about the upcoming release, the new website design 🖥️, and more!
Write to [email protected] to receive the Zoom login details
#science #FAIRdata 🧫🧪
The #SILVA team will inform about the upcoming release, the new website design 🖥️, and more!
Write to [email protected] to receive the Zoom login details
#science #FAIRdata 🧫🧪
🧬🤖 The agenda for the 6th de.NBI Industrial Forum is set!
🗓️ Nov 27th, 1–4pm CET | 🌐 Online
Join us for #AI, #LLMs, plant bioinformatics, federated learning & more—plus the unveiling of FZJ’s Jupiter AI Factory!
📣 Registration open: www.denbi.de/industrial-f...
#Bioinformatics #IndustrialForum
🗓️ Nov 27th, 1–4pm CET | 🌐 Online
Join us for #AI, #LLMs, plant bioinformatics, federated learning & more—plus the unveiling of FZJ’s Jupiter AI Factory!
📣 Registration open: www.denbi.de/industrial-f...
#Bioinformatics #IndustrialForum
November 18, 2025 at 12:36 PM
🧬🤖 The agenda for the 6th de.NBI Industrial Forum is set!
🗓️ Nov 27th, 1–4pm CET | 🌐 Online
Join us for #AI, #LLMs, plant bioinformatics, federated learning & more—plus the unveiling of FZJ’s Jupiter AI Factory!
📣 Registration open: www.denbi.de/industrial-f...
#Bioinformatics #IndustrialForum
🗓️ Nov 27th, 1–4pm CET | 🌐 Online
Join us for #AI, #LLMs, plant bioinformatics, federated learning & more—plus the unveiling of FZJ’s Jupiter AI Factory!
📣 Registration open: www.denbi.de/industrial-f...
#Bioinformatics #IndustrialForum
💻☁️ Don't forget to register for our online workshop: de.KCD / de.NBI Cloud – #Terraform meets #Infracost
📅 Nov 26, 14:30–16:00 CET
Learn to estimate cloud costs with Infracost & Terraform—CLI setup, cost calc, and CI/CD integration!
Register here: www.denbi.de/training-cou...
#CloudComputing
📅 Nov 26, 14:30–16:00 CET
Learn to estimate cloud costs with Infracost & Terraform—CLI setup, cost calc, and CI/CD integration!
Register here: www.denbi.de/training-cou...
#CloudComputing
November 17, 2025 at 1:16 PM
💻☁️ Don't forget to register for our online workshop: de.KCD / de.NBI Cloud – #Terraform meets #Infracost
📅 Nov 26, 14:30–16:00 CET
Learn to estimate cloud costs with Infracost & Terraform—CLI setup, cost calc, and CI/CD integration!
Register here: www.denbi.de/training-cou...
#CloudComputing
📅 Nov 26, 14:30–16:00 CET
Learn to estimate cloud costs with Infracost & Terraform—CLI setup, cost calc, and CI/CD integration!
Register here: www.denbi.de/training-cou...
#CloudComputing
Photo by Dominik Wenzlik | few.Media
November 14, 2025 at 9:03 AM
Photo by Dominik Wenzlik | few.Media
The @denbi.bsky.social crew & friends from Germany at #BioHackEU25!
November 14, 2025 at 8:19 AM
The @denbi.bsky.social crew & friends from Germany at #BioHackEU25!
🦕💡 On 4–5 Nov, de.NBI & ELIXIR Germany hosted the 24th ELIXIR Board Meeting in Berlin!
Honored to welcome delegates from @elixir-europe.org Nodes & #BMFTR, highlighting why research infrastructures are anything but dinosaurs—flexible, connected & future-ready. Big thanks to all!
Honored to welcome delegates from @elixir-europe.org Nodes & #BMFTR, highlighting why research infrastructures are anything but dinosaurs—flexible, connected & future-ready. Big thanks to all!
November 12, 2025 at 12:18 PM
🦕💡 On 4–5 Nov, de.NBI & ELIXIR Germany hosted the 24th ELIXIR Board Meeting in Berlin!
Honored to welcome delegates from @elixir-europe.org Nodes & #BMFTR, highlighting why research infrastructures are anything but dinosaurs—flexible, connected & future-ready. Big thanks to all!
Honored to welcome delegates from @elixir-europe.org Nodes & #BMFTR, highlighting why research infrastructures are anything but dinosaurs—flexible, connected & future-ready. Big thanks to all!
Reposted by de.NBI & ELIXIR Germany
yey! also spotted hackathon co-lead @philouail.bsky.social - I was only virtually attending 😔 - and very likely missed a lot of fun
🎉 We are excited to join this year's #Biohackathon Europe in Bad Saarow!
Looking forward to a week of fruitful projects, networking, & fun—thanks to the @elixir-europe.org Hub & everyone joining onsite or online!
🚀 @sneumann.bsky.social, Michael Crusoe, Nils Hoffmann & many more from across Europe.
Looking forward to a week of fruitful projects, networking, & fun—thanks to the @elixir-europe.org Hub & everyone joining onsite or online!
🚀 @sneumann.bsky.social, Michael Crusoe, Nils Hoffmann & many more from across Europe.
November 7, 2025 at 4:33 PM
yey! also spotted hackathon co-lead @philouail.bsky.social - I was only virtually attending 😔 - and very likely missed a lot of fun
Reposted by de.NBI & ELIXIR Germany
Many thanks to all authors - Arber Qoku, Martin Rohbeck, Florin Walter, Ilia Kats, Florian Buettner - and everyone who supported this work. Funding from @erc.europa.eu , @denbi.bsky.social and @dfg.de.
@dkfz.bsky.social @embl.org @oliverstegle.bsky.social
📑 Preprint: doi.org/10.1101/2025...
13/13
@dkfz.bsky.social @embl.org @oliverstegle.bsky.social
📑 Preprint: doi.org/10.1101/2025...
13/13
MOFA-FLEX: A Factor Model Framework for Integrating Omics Data with Prior Knowledge
Latent factor models are first-line analysis approaches for single- and multi-omics data, essential for data integration, alignment, and biological signal discovery. To cater for new technologies and ...
doi.org
November 7, 2025 at 10:29 AM
Many thanks to all authors - Arber Qoku, Martin Rohbeck, Florin Walter, Ilia Kats, Florian Buettner - and everyone who supported this work. Funding from @erc.europa.eu , @denbi.bsky.social and @dfg.de.
@dkfz.bsky.social @embl.org @oliverstegle.bsky.social
📑 Preprint: doi.org/10.1101/2025...
13/13
@dkfz.bsky.social @embl.org @oliverstegle.bsky.social
📑 Preprint: doi.org/10.1101/2025...
13/13
Reposted by de.NBI & ELIXIR Germany
Curious about plant genomics? 🌿
Join our upcoming training courses to explore how plant genomes are assembled and annotated.
Details 👉 www.izmb.uni-bonn.de/en/pbb/news#...
#Genomics #Bioinformatics #DeNBI #PlantScience
@denbi.bsky.social @puckerlab.bsky.social
Join our upcoming training courses to explore how plant genomes are assembled and annotated.
Details 👉 www.izmb.uni-bonn.de/en/pbb/news#...
#Genomics #Bioinformatics #DeNBI #PlantScience
@denbi.bsky.social @puckerlab.bsky.social
November 6, 2025 at 5:25 PM
Curious about plant genomics? 🌿
Join our upcoming training courses to explore how plant genomes are assembled and annotated.
Details 👉 www.izmb.uni-bonn.de/en/pbb/news#...
#Genomics #Bioinformatics #DeNBI #PlantScience
@denbi.bsky.social @puckerlab.bsky.social
Join our upcoming training courses to explore how plant genomes are assembled and annotated.
Details 👉 www.izmb.uni-bonn.de/en/pbb/news#...
#Genomics #Bioinformatics #DeNBI #PlantScience
@denbi.bsky.social @puckerlab.bsky.social
Reposted by de.NBI & ELIXIR Germany
🚀 WE ARE HIRING 3️⃣ Independent Group Leaders for #mdcBerlin's new cutting-edge Bioengineering Cluster within our Biomedical Engineering Program.
Lead cutting-edge research at the interface of biology, engineering, and medicine in Berlin.
👉 Apply now: www.mdc-berlin.de/career/jobs/...
Lead cutting-edge research at the interface of biology, engineering, and medicine in Berlin.
👉 Apply now: www.mdc-berlin.de/career/jobs/...
October 9, 2025 at 11:00 AM
🚀 WE ARE HIRING 3️⃣ Independent Group Leaders for #mdcBerlin's new cutting-edge Bioengineering Cluster within our Biomedical Engineering Program.
Lead cutting-edge research at the interface of biology, engineering, and medicine in Berlin.
👉 Apply now: www.mdc-berlin.de/career/jobs/...
Lead cutting-edge research at the interface of biology, engineering, and medicine in Berlin.
👉 Apply now: www.mdc-berlin.de/career/jobs/...
Reposted by de.NBI & ELIXIR Germany
👀 Are you a strategic operator with strong interpersonal leadership?
✨ #ELIXIR is looking for a Head of Operations to lead the ELIXIR Operations team and coordinate implementation of our scientific programme.
Apply by 15 November 👉 https://loom.ly/uHj611E
✨ #ELIXIR is looking for a Head of Operations to lead the ELIXIR Operations team and coordinate implementation of our scientific programme.
Apply by 15 November 👉 https://loom.ly/uHj611E
November 6, 2025 at 11:45 AM
👀 Are you a strategic operator with strong interpersonal leadership?
✨ #ELIXIR is looking for a Head of Operations to lead the ELIXIR Operations team and coordinate implementation of our scientific programme.
Apply by 15 November 👉 https://loom.ly/uHj611E
✨ #ELIXIR is looking for a Head of Operations to lead the ELIXIR Operations team and coordinate implementation of our scientific programme.
Apply by 15 November 👉 https://loom.ly/uHj611E
🎥 Missed the first @denbi.bsky.social × @ghga.bsky.social webinar? No worries—it's now available on YouTube!
Catch up on "Building a RDM Ecosystem - de.NBI & ELIXIR-DE and how to use the de.NBI Cloud".
Watch here: www.youtube.com/watch?v=kiAD...
#deNBI #ELIXIRDE #GHGA #Webinar #OpenScience
Catch up on "Building a RDM Ecosystem - de.NBI & ELIXIR-DE and how to use the de.NBI Cloud".
Watch here: www.youtube.com/watch?v=kiAD...
#deNBI #ELIXIRDE #GHGA #Webinar #OpenScience
Building a RDM Ecosystem: de.NBI & ELIXIR-DE and how to use the de.NBI Cloud w/ Daniel Wibberg
YouTube video by GHGA - The German Human Genome-Phenome Archive
www.youtube.com
November 6, 2025 at 9:00 AM
🎥 Missed the first @denbi.bsky.social × @ghga.bsky.social webinar? No worries—it's now available on YouTube!
Catch up on "Building a RDM Ecosystem - de.NBI & ELIXIR-DE and how to use the de.NBI Cloud".
Watch here: www.youtube.com/watch?v=kiAD...
#deNBI #ELIXIRDE #GHGA #Webinar #OpenScience
Catch up on "Building a RDM Ecosystem - de.NBI & ELIXIR-DE and how to use the de.NBI Cloud".
Watch here: www.youtube.com/watch?v=kiAD...
#deNBI #ELIXIRDE #GHGA #Webinar #OpenScience
📊🚀 Check out Project #15 “Metrics” at Biohackathon Europe 2025!
Monitoring KPIs for ELIXIR Services—mapping indicators & creating an “indicator ontology” for better self-assessment & reporting.
Partners: ELIXIR UK, CZ, DE, CH, IE, & more.
🔗 github.com/elixir-europ...
@elixir-europe.org #BioHackEU25
Monitoring KPIs for ELIXIR Services—mapping indicators & creating an “indicator ontology” for better self-assessment & reporting.
Partners: ELIXIR UK, CZ, DE, CH, IE, & more.
🔗 github.com/elixir-europ...
@elixir-europe.org #BioHackEU25
November 6, 2025 at 7:51 AM
📊🚀 Check out Project #15 “Metrics” at Biohackathon Europe 2025!
Monitoring KPIs for ELIXIR Services—mapping indicators & creating an “indicator ontology” for better self-assessment & reporting.
Partners: ELIXIR UK, CZ, DE, CH, IE, & more.
🔗 github.com/elixir-europ...
@elixir-europe.org #BioHackEU25
Monitoring KPIs for ELIXIR Services—mapping indicators & creating an “indicator ontology” for better self-assessment & reporting.
Partners: ELIXIR UK, CZ, DE, CH, IE, & more.
🔗 github.com/elixir-europ...
@elixir-europe.org #BioHackEU25
Reposted by de.NBI & ELIXIR Germany
✔️Just published:
#TYGS and #LPSN in 2025: a Global Core Biodata Resource 🧬🖥️ for genome-based classification and nomenclature of prokaryotes 🦠 within #DSMZDigitalDiversity
👉 academic.oup.com/nar/article/...
#TYGS and #LPSN in 2025: a Global Core Biodata Resource 🧬🖥️ for genome-based classification and nomenclature of prokaryotes 🦠 within #DSMZDigitalDiversity
👉 academic.oup.com/nar/article/...
TYGS and LPSN in 2025: a Global Core Biodata Resource for genome-based classification and nomenclature of prokaryotes within DSMZ Digital Diversity
Abstract. The List of Prokaryotic names with Standing in Nomenclature (LPSN, https://lpsn.dsmz.de/) is an authoritative, expert-curated resource on prokary
academic.oup.com
November 3, 2025 at 5:39 PM
✔️Just published:
#TYGS and #LPSN in 2025: a Global Core Biodata Resource 🧬🖥️ for genome-based classification and nomenclature of prokaryotes 🦠 within #DSMZDigitalDiversity
👉 academic.oup.com/nar/article/...
#TYGS and #LPSN in 2025: a Global Core Biodata Resource 🧬🖥️ for genome-based classification and nomenclature of prokaryotes 🦠 within #DSMZDigitalDiversity
👉 academic.oup.com/nar/article/...
Reposted by de.NBI & ELIXIR Germany
🇭🇷 Croatia has joined ELIXIR as an Observer, following approval by the ELIXIR Board on 4 November 2025. 💪 Croatian #bioinformatics community can strengthen its collaboration with other ELIXIR Nodes!
Read the news: https://loom.ly/Lb-Wt1I
Read the news: https://loom.ly/Lb-Wt1I
November 4, 2025 at 1:41 PM
🇭🇷 Croatia has joined ELIXIR as an Observer, following approval by the ELIXIR Board on 4 November 2025. 💪 Croatian #bioinformatics community can strengthen its collaboration with other ELIXIR Nodes!
Read the news: https://loom.ly/Lb-Wt1I
Read the news: https://loom.ly/Lb-Wt1I
🎉 We are excited to join this year's #Biohackathon Europe in Bad Saarow!
Looking forward to a week of fruitful projects, networking, & fun—thanks to the @elixir-europe.org Hub & everyone joining onsite or online!
🚀 @sneumann.bsky.social, Michael Crusoe, Nils Hoffmann & many more from across Europe.
Looking forward to a week of fruitful projects, networking, & fun—thanks to the @elixir-europe.org Hub & everyone joining onsite or online!
🚀 @sneumann.bsky.social, Michael Crusoe, Nils Hoffmann & many more from across Europe.
November 4, 2025 at 12:16 PM
🎉 We are excited to join this year's #Biohackathon Europe in Bad Saarow!
Looking forward to a week of fruitful projects, networking, & fun—thanks to the @elixir-europe.org Hub & everyone joining onsite or online!
🚀 @sneumann.bsky.social, Michael Crusoe, Nils Hoffmann & many more from across Europe.
Looking forward to a week of fruitful projects, networking, & fun—thanks to the @elixir-europe.org Hub & everyone joining onsite or online!
🚀 @sneumann.bsky.social, Michael Crusoe, Nils Hoffmann & many more from across Europe.