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Reposted by Hannah Heil

Jean-Yves Tinevez @jytinevez.bsky.social · 1d

Job alert!

We are looking for a bioimage analysis to work in an image analysis core facility in beautiful Paris. Can I ask you to share this opportunity with your networks?

See also on the forum:
forum.image.sc/t/research-e...

Research engineer in Bioimage Analysis for the researchers of the inIdEx FORMULA

Hi all We are looking for a bioimage analysis to work in an image analysis core facility in beautiful Paris. Can I ask you to share this opportunity with your networks? The position is in the Instit...

forum.image.sc

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Peter O'Toole @yorkbioimaging.bsky.social · 5d

Happy #FluorescenceFriday. Christophe Leterrier⭐in #TheMicroscopists and reflects on the
make-or-break moment at the end of his postdoc
when he came close to leaving academia before securing his CNRS position
and how these experiences shape the way he mentors others.
Stream: bit.ly/microscopist...

The Microscopists | Christophe Leterrier (CNRS & Aix-Marseille Université)

This time on The Microscopists, we're joined by Christophe Leterrier, team leader at NeuroCyto in Marseille and director of a Nikon Center of Excellence for super-resolution microscopy.Christophe r...

bit.ly

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Lucien Hinderling @lhinderling.bsky.social · 7d

... and 7 academic labs! @olivierpertz.bsky.social @toettch.bsky.social @hannah-superres.bsky.social @alfredorates.bsky.social
Your implementation is missing? Want to join our monthly meetings on smart microscopy approaches? Contact us & find out more on
smartmicroscopy.github.io

Smart Microscopy Working Group — Smart Microscopy Working Group's Website

smartmicroscopy.github.io

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Lucien Hinderling @lhinderling.bsky.social · 7d

Want to get started with smart microscopy? 🧠🔬
Check out our online repository with implementations from labs and industry -- lots of practical tips and links to sample code! smartmicroscopy.github.io/implementati...

More details in the ✨updated preprint!✨
www.biorxiv.org/content/10.1...

screenshots of some of the sample implementations

Screenshot of smartmicroscopy.github.io/implementations.html, showing an overview of collected implementation examples

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Christophe 🔬 L @christlet.bsky.social · 21d

Our new preprint is up! This is the main postdoc work of @wiesner-t.bsky.social focusing on exocytosis along the axon shaft and its regulation by the sub membrane actin-spectrin scaffold: www.biorxiv.org/content/10.1...
Read the thread below for a summary of our findings 🧵1/11

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Jonatan Alvelid @jonatanalvelid.bsky.social · Sep 2

It is all implemented as a Pyton-based open source control widget that seamlessly interfaces with a commercial @abberior.rocks MINFLUX microscope and its control software Imspector. Try it for yourself, and let me know if you have any questions! github.com/jonatanalvel...

GitHub - jonatanalvelid/etMINFLUX: Event-triggered MINFLUX: a smart microscopy control software interacting with Imspector that is controlling an Abberior MINFLUX system.

Event-triggered MINFLUX: a smart microscopy control software interacting with Imspector that is controlling an Abberior MINFLUX system. - jonatanalvelid/etMINFLUX

github.com

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Jonatan Alvelid @jonatanalvelid.bsky.social · Sep 2

etMINFLUX uses confocal monitoring and triggers MINFLUX acquisitions at rapid and rare events in living cells previously unreachable with MINFLUX, exemplified by tracking the 3D membrane topography in dynamin-mediated endocytosis (10 s) and virus budding (min) in action.

etMINFLUX applications measuring 2D lipid diffusion at caveolae, and 3D membrane topography at dynamin-mediated endocytosis and virus budding sites.

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Jonatan Alvelid @jonatanalvelid.bsky.social · Sep 2

Excited to share my postdoc work from the Eggeling lab in Jena (@leibnizipht.bsky.social, #FSUJena, #KTHuniversity) on bringing smart microscopy to super-resolution MINFLUX: event-triggered MINFLUX microscopy.

Demonstrative schematics and example timeline of event-triggered MINFLUX microscopy.

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Christophe 🔬 L @christlet.bsky.social · Aug 31

Sounds like an interesting comparison of resolution assessment methods for super-resolution… Would anyone with access send me the pdf (christophe dot leterrier dot gmail dot com)? Thanks!
link.springer.com/article/10.1...

Resolution assessment of super-resolution microscopy imaging: structural and technical dependencies for cell biology - Cytotechnology

Super-resolution fluorescence microscopy (SRM) has enabled visualization of nanoscale cellular structures, but systematic evaluation of resolution assessment methods across diverse biological structur...

link.springer.com

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Siân Culley @superresolusian.bsky.social · Aug 7

Hello! Very excited to share our latest preprint, which is great news for us but terrible news for any diehard fans of PSNR and SSIM as image quality metrics in microscopy... (1/5)
www.biorxiv.org/content/10.1...

Image quality metrics fail to accurately represent biological information in fluorescence microscopy

Image processing methods offer the potential to improve the quality of fluorescence microscopy data, allowing for image acquisition at lower, less phototoxic illumination doses. The training and evalu...

www.biorxiv.org

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Lucien Hinderling @lhinderling.bsky.social · Aug 21

PS: Also check out our other paper on smart microscopy that came out this week! Current applications, technical details of different implementations. The issue of missing standards in microscopy control / poor interoperability & how we think it could be solved! www.biorxiv.org/content/10.1...

Smart Microscopy: Current Implementations and a Roadmap for Interoperability

Smart microscopy is transforming life sciences by automating experimental imaging workflows and enabling real-time adaptation based on feedback from images and other data streams. This shift increases...

www.biorxiv.org

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Lucien Hinderling @lhinderling.bsky.social · Aug 21

Automated optogenetic control of hundreds of cells in parallel. Each cell is individually steered, collectively acting as a "tissue printer". Preprint & code out! www.biorxiv.org/content/10.1...

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Hannah Heil @hannah-superres.bsky.social · Aug 21

Thank you for pointing this out! 👍

Hannah Heil @hannah-superres.bsky.social · Aug 20

The team p3: Jürgen Reymann @leicamicrosystems.bsky.social , @talley.codes , Marco R. Cosenza, Jan O. Korbel, Rainer Pepperkok, Lukas C. Kapitein, Olivier Pertz, @nilsnorlin.bsky.social , Aliaksandr Halavatyi and Rafael Camacho

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Hannah Heil @hannah-superres.bsky.social · Aug 20

The team p2: Scott Brooks (3i), Evangelos Sisamakis @picoquant.bsky.social , Grandgirard Erwan, Karl Johansson, Johannes K. Ahnlinde, Oscar André, @philipnordenfelt.bsky.social, @pnordenfelt.bsky.social, Claudia Pfander @eurobioimaging.bsky.social...

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Hannah Heil @hannah-superres.bsky.social · Aug 20

The team p1: @lhinderling.bsky.social
@alfredorates.bsky.social, Philipp Seidel @zeiss-microscopy.bsky.social, Manuel Gunkel, Benedict Diederich @openuc2.bsky.social, Thomas Guilbert, Rémy Torro, Otmane Bouchareb, Claire Demeautis, Célia Martin @inscoper.bsky.social...

a group of power rangers standing next to each other with the words `` super team '' above them .

ALT: a group of power rangers standing next to each other with the words `` super team '' above them .

media.tenor.com

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Hannah Heil @hannah-superres.bsky.social · Aug 20

Check out the individual contributions of smart microsopy implementations: smartmicroscopy.github.io

Smart Microscopy Working Group — Smart Microscopy Working Group's Website

smartmicroscopy.github.io

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Hannah Heil @hannah-superres.bsky.social · Aug 20

🚨 New preprint on bioRxiv! 🚨
Smart microscopy🔬 is reshaping life sciences—but progress is slowed by fragmentation.
@lhinderling.bsky.social & the Smart Microsopy Working Group maps the field & proposes a path toward an open, interoperable future.
🧵👇
doi.org/10.1101/2025...

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eurobioimaging.bsky.social @eurobioimaging.bsky.social · Aug 20

Join us at #BNMI2025 today at 11:30 for our talk ‘Euro-BioImaging – another kind of smart microscopy’. Also, don’t miss our poster on the Smart Microscopy Working Group!

More info:

BNMI 2025 Symposium

The 4th annual meeting of the Bridging Nordic Microscopy Infrastructure, “The BNMI 2025 Symposium” will be hosted by the Centre for Cellular Imaging at the University of Gothenburg, Sweden…

www.eurobioimaging.eu

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bioRxivpreprint @biorxivpreprint.bsky.social · Aug 19

Real-time feedback control microscopy for automation of optogenetic targeting https://www.biorxiv.org/content/10.1101/2025.08.17.670729v1

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Hannah Heil @hannah-superres.bsky.social · Aug 17

☀️🌊 On my way to Gothenburg 🇸🇪 for #BNMI2025. Especially looking forward to the pre-symposium Smart-Microscopy Workshop 🔬👾 and to connect to the Nordic microscopy community 🤩!

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Paul & Virginie - Centriole Lab @centriolelab.bsky.social · Jul 21

🚨 New EMBO Practical Course!
Ultrastructure Expansion Microscopy: From Cells to Tissue 🔬
📅 20–24 Apr 2026 | 📍 EMBL Heidelberg
Co-organised with @banterlegroup.bsky.social @gautamdey.bsky.social

💡 Register your interest to get notified when registration opens:

🔗 www.embl.org/about/info/c...

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Malte Kuehl @maltekuehl.com · Jul 18

🚨Scaling multiplexed imaging 📈 We are excited to share Pathology-oriented multiPlexing (PathoPlex). Now out in @nature.com: www.nature.com/articles/s41...

🧵Walk-through thread below ⬇️

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Martin Weigert @maweigert.bsky.social · Jul 10

Do you like developing new AI vision methods for microscopy image analysis? You love theory & implementation? 1 week left to apply for a fully funded PhD position in our lab in Dresden 🇩🇪! Topics: object detection/tracking, multimodal models & more. DM/email for details! #PhD #AcademicJobs #GPUsgoBrr

Vacancy ID 12244

www.verw.tu-dresden.de

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Hannah Heil @hannah-superres.bsky.social · Jul 4

🚨 Important detail in the #ExM & #eSRRF protocol: #eSRRF is not only available as plugin in #ImageJ /Fiji 🌴, #NanoPyx also brings it into the #python world 🐍: doi.org/10.1038/s415...
How to get started? Check out the training manual: doi.org/10.5281/zeno...

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