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Reposted by Jesse McNichol

Michael E. Mann @michaelemann.bsky.social · 2d

“The Party told you to reject the evidence of your eyes and ears. It was their final, most essential command.”

― George Orwell, 1984

Aaron Rupar @atrupar.com · 2d

Mike Johnson: "Let me look right into the camera and tell you very clearly: Republicans are the ones concerned about healthcare. Republicans are the party working around the clock everyday to fix healthcare. This is not talking points for us: we've done it."

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Hiro Imachi @hiro-imachi.bsky.social · 22d

Wow, our AEM paper on a new methane-oxidizing bacterium just got a Commentary! 🎉
Congrats Kambara-san—so happy to see the work getting recognized!
journals.asm.org/doi/10.1128/...

Expansion of aerobic methanotrophy to the phylum of Actinomycetota and its environmental implications | Applied and Environmental Microbiology

The climate crisis is one of the most imminent threats to humanity and all life on our planet. Methane is not only the second most potent greenhouse gas (GHG) and is responsible for approximately 31% of GHG-induced global warming since the start of the industrial revolution (1) but is also the most rapid increasing GHG in the atmosphere (2). The latter is likely caused by increased microbiological production of methane from, e.g., wetlands (2). This fact stresses the importance of methanotrophic microbes that can degrade methane with and without oxygen (3, 4) and thereby fulfill a crucial role in our global climate.

journals.asm.org

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Ramunas Stepanauskas @rstepanauskas.bsky.social · Sep 7

I’m excited to share our effort to obtain one of the first estimates of the net rate, in physical time, of lateral gene transfer (LGT) – nature’s own genetic engineering - across a complex, global microbiome:
doi.org/10.1093/isme...

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Julia M. Wright @juliamwright.bsky.social · Sep 1

Not just classes are cancelled. DFA members have been locked out by the admin since August 20th: we can't sign students in from waitlists, can't advise them, can't share syllabi, can't help them with scholarship applications, etc. etc.

#KeepDalStrong

www.cbc.ca/news/canada/...

'I just want to learn': Students in limbo as many Dalhousie classes cancelled amid strike | CBC News

Classes at Dalhousie University are supposed to start on Tuesday, but most have been cancelled due to a strike.

www.cbc.ca

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Prof. Stefan Rahmstorf @rahmstorf.bsky.social · Aug 30

Wow. Check this out.
Politicians actually trying to solve problems can achieve a lot!
www.washingtonpost.com/climate-solu...

Paris said au revoir to cars. Air pollution maps reveal a dramatic change.

Air pollution fell substantially as the city restricted car traffic and made way for parks and bike lanes.

www.washingtonpost.com

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Tricycle: The Buddhist Review @tricyclemag.bsky.social · Aug 28

“Suffering is not a death sentence; it can be confronted, it can be overcome. And we can be creative in how we address the human condition.” —Ofosu Jones-Quartey

Hip-Hop as a Contemplative Practice

Jessica Angima talks with Buddhist teacher and rapper Born I about Lyrical Dharma, the limits of language, and how we all contain the seeds of our ancestors.

tricycle.org

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Jason Haslam @jasonhaslam.ca · Aug 26

I am increasingly frustrated, even angry, about the hypocrisy—tempted to say disinformation—from @dalhousie.bsky.social’s administration. How can you say “the university’s priority is working with the DFA to reach a resolution” when they have not even tried to return to the table? #KeepDalStrong

‘Challenges and uncertainty:’ Dalhousie University faculty lockout leaves students worried

The lockout of Dalhousie University faculty is inching closer to the start of the school year, and it's fuelling concerns among students.

www.ctvnews.ca

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Dalhousie Faculty Association @dalfaculty.bsky.social · Aug 27

Chris Algar, Assoc Prof, Oceanography @dalhousieu.bsky.social Lessons in solidarity from the picket lines. This isn’t just a fight to #KeepDalStrong; it’s a fight against employer greed. @ansut.bsky.social @caut.bsky.social

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Cameron Thrash @jcamthrash.bsky.social · Aug 12

Sequestration by the biological carbon pump: Do we really know what we are talking about? aslopubs.onlinelibrary.wiley.com/doi/10.1002/... #jcampubs 🌊

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Cameron Thrash @jcamthrash.bsky.social · Jul 16

Our latest, and the second paper led by Jordan Coelho this year. Want to remove bacteria from POM for single-cell microbiology/culturing/'omics applications? We've got some data:

Detergent-based separation of microbes from marine particles www.biorxiv.org/content/10.1... #jcampubs 🌊

Detergent-based separation of microbes from marine particles

Marine particles, typically composed of organic detritus and cellular debris, harbor microbial communities that are distinct from the planktonic, or free-living, communities in the pelagic ocean. Howe...

www.biorxiv.org

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Ben J Woodcroft @benjwoodcroft.bsky.social · Jul 16

Out in @natbiotech.nature.com: Metagenome taxonomy profilers usually ignore unknown species. SingleM is an accurate profiler which doesn't, even detecting phyla with no MAGs. Profiles of 700,000 metagenomes at sandpiper.qut.edu.au. A 🧵

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Jesse McNichol @jcmcnch.bsky.social · Jul 14

For a handy summary of what GRUMP is, feel free to view and share the following presentation from the CBIOMES 2025 annual meeting: slides.com/jcmcnch/cbio...

GRUMP Presentation 2025

CBIOMES 2025, GRUMP

slides.com

Jesse McNichol @jcmcnch.bsky.social · Jul 14

For a handy summary of what GRUMP is, feel free to view and share the following presentation from the CBIOMES 2025 annual meeting: slides.com/jcmcnch/cbio...

GRUMP Presentation 2025

CBIOMES 2025, GRUMP

slides.com

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Jesse McNichol @jcmcnch.bsky.social · Jul 9

You might try BLASTing against GRUMP ASVs: www.nature.com/articles/s41... We don't have a web tool but pros of GRUMP are good coverage of the ocean, unfractionated samples (>0.2 μm), and you can access the data through CMAP here: simonscmap.com/catalog/data...

Characterizing organisms from three domains of life with universal primers from throughout the global ocean - Scientific Data

Scientific Data - Characterizing organisms from three domains of life with universal primers from throughout the global ocean

www.nature.com

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Jed Fuhrman @jedfuhrman.bsky.social · Jul 2

Please Re-Post. Our global GRUMP microbial ocean database is out in Scientific Data! Unfractionated, single universal PCR, with Archaea, Bacteria, and Eukaryotes all on the same scale with the same denominator. Pole to pole, depths to 6000m. Lots of metadata. www.nature.com/articles/s41...

Characterizing organisms from three domains of life with universal primers from throughout the global ocean - Scientific Data

Scientific Data - Characterizing organisms from three domains of life with universal primers from throughout the global ocean

www.nature.com

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Jesse McNichol @jcmcnch.bsky.social · Jul 3

It was great to have you guys on board! Cheers from Nova Scotia!

Jesse McNichol @jcmcnch.bsky.social · Jul 3

Thanks Augustus! Will be great to see your study and glad you find the 3-domain primers useful to your research 😀

Jesse McNichol @jcmcnch.bsky.social · Jul 2

Thanks for carrying the baton across the finish line gentlemen. Keep an eye out in the next few years for papers from Yubin and Lexi Jones-Kellett, a new-and-improved bioinformatic pipeline (snakemake!), as well as GRUMP 2.0 (now with internal standards!).

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Jesse McNichol @jcmcnch.bsky.social · Jul 2

This was a huge team effort - many thanks to our collaborators, especially "early adopters" including Craig/Ellie (UCSB), Paul/‪@stevenbiller.bsky.social‬ (MIT/Wellesley), Wade/Joe (USF) as well as my "partners in crime" Nathan Williams and Yubin Raut!

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Jesse McNichol @jcmcnch.bsky.social · Jul 2

The GRUMP project began in 2018 when I started as a postdoc in @jedfuhrman.bsky.social's lab and was funded by the @simonsfoundation.org as part of the CBIOMES collaboration.

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Jesse McNichol @jcmcnch.bsky.social · Jul 2

So excited to announce the GRUMP paper is published! This global dataset provides relative abundances for plankton spanning Archaea to Zooplankton from unfractionated (>0.2µm) water samples using 3-domain universal primers that amplify 16S and 18S in one PCR reaction.

www.nature.com/articles/s41...

Characterizing organisms from three domains of life with universal primers from throughout the global ocean - Scientific Data

Scientific Data - Characterizing organisms from three domains of life with universal primers from throughout the global ocean

www.nature.com

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Science Magazine @science.org · Jun 24

"Institutions must support transgender and gender nonconforming and other marginalized scientists by securing their safety and privacy; their access to legal aid and health care; and their opportunities in education, employment, and society," argues a new #LetterToScience. scim.ag/4kQCMtr

Protect transgender scientists

Transgender and gender nonconforming (TGnC) people are a primary target of the Trump administration. Multiple executive orders seek to erase TGnC protections; mandate denial of gender identity; and ba...

scim.ag

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Simons Foundation @simonsfoundation.org · Jun 2

A healthy diet outperforms fecal transplants in restoring and protecting the gut microbiome, according to new research from the Simons Foundation’s Joy Bergelson and collaborators: www.simonsfoundation.org/2025/05/13/t... #science

quote that reads "This study is a great example of a clinically relevant finding that stems from very fundamental, basic science"

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joe vallino ∫🦠dxdt ≻∫🔥dxdt @mepjoe.bsky.social · Jun 5

NSF: "Biology, engineering, and education will all be slashed by over 70 percent..."
"The fleet of research ships [UNOLS] will essentially become someone else's problem"

Contact your representatives, even in blue states, as these cuts can still be stopped!

arstechnica.com/science/2025...

US science is being wrecked, and its leadership is fighting the last war

Facing an extreme budget, the National Academies hosted an event that ignored it.

arstechnica.com

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Elizabeth May @elizabethemay.bsky.social · Jun 5

Very grateful to #MarcGarneau for his kindness and support when we fought to protect environmental laws attacked by Harper administration. We have lost a truly great Canadian.. and far too soon. #RIP

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