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Joseph Gaudard

@jogaudard.bsky.social

200 followers 290 following 58 posts

Arctic & Alpine Ecology | Ecosystem gas fluxes | R programming | Fieldwork safety & inclusivity | Open science 🇨🇭 🇨🇦 🇽🇰 🇩🇰 🇬🇱 🇷🇺 🇦🇹 🇧🇻 (in that order) jogaudard.github.io/CV_jgaudard

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Joseph Gaudard @jogaudard.bsky.social · 13d

My first PhD paper is out!
It describes the fluxible #rstats package, a toolbox to process and quality check #ecosystem #gasfluxes in a reproducible and automated way.

@unibergen.bsky.social @btwnthefjords-uib.bsky.social @bjerknes.uib.no @li-corenv.bsky.social @methodsinecoevol.bsky.social

fluxible: An R package to process ecosystem gas fluxes from closed‐loop chambers in an automated and reproducible way

Measuring ecosystem gas fluxes is crucial to understanding the dynamics of ecosystem water and energy cycling. A common method to measure ecosystem gas fluxes (CO2, CH4, N2O) and to compare experi...

doi.org

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Reposted by Joseph Gaudard

Methods in Ecology and Evolution @methodsinecoevol.bsky.social · 2d

📖Published📖

The fluxible #rstats package provides tools to process #ecosystem gas fluxes in a fully #reproducible workflow, while offering full flexibility to the user 🌍 🧪 Read more here 👇

buff.ly/dSpRkOe

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Reposted by Joseph Gaudard

Critical Mass Bergen @criticalmassbergen.bsky.social · 4d

We were almost a hundred at the last #criticalmass! Such good vibes!

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Reposted by Joseph Gaudard

Proton @proton.me · 4d

Avoiding US tech? Some European alts:

🇳🇴 Browser: Vivaldi
🇫🇷 Search: Qwant
🇫🇷 Music: Deezer
🇫🇷 Hosting: OVH
🇫🇮 Mobile OS: Jolla
🇩🇪 Maps: Here WeGo
🇩🇪 Translation: DeepL
🇳🇱 Design: Sketch
🇨🇭 Notes: Standard Notes
🇨🇭 Messenger: Threema
🇨🇭 Dev Tools: Sonar

https://proton.me/blog/european-tech-alternatives

European alternatives to US tech | Proton | Proton

Take back control of your digital life with privacy-focused European alternatives to US Big Tech apps and services.

proton.me

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Reposted by Joseph Gaudard

Critical Mass Bergen @criticalmassbergen.bsky.social · 11d

Yesterday, we had two situations where the police needed to overtake the #criticalmass. Big ups to everyone, you acted fast and efficiently to clear the way!

Also shows how bike traffic, even at high density, is more flexible and fluid when it comes to adapt to a new situation.

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Joseph Gaudard @jogaudard.bsky.social · 13d

It's today!

Critical Mass Bergen @criticalmassbergen.bsky.social · 13d

Tomorrow's ride will start at 18:00 from Den Blå Steinen and end up at Bergen Kjøtt.
Join us, make yourself seen, take space, be loud! WE ARE TRAFFIC!

criticalmassbergen.com/critical-mas...

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Joseph Gaudard @jogaudard.bsky.social · 13d

With @richardjtelford.bsky.social J Chacon-Labella @hilaryrosed.bsky.social @bjenquist.bsky.social JP Töpper @jonastrepel.bsky.social @vvandvik.bsky.social @martabaumane.bsky.social @kristabirk.bsky.social MJM Holle, JR Hupp @pefren.bsky.social TW Satriawan, and @audhalbritter.bsky.social

Joseph Gaudard @jogaudard.bsky.social · 13d

fluxible: An R package to process ecosystem gas fluxes from closed‐loop chambers in an automated and reproducible way

Measuring ecosystem gas fluxes is crucial to understanding the dynamics of ecosystem water and energy cycling. A common method to measure ecosystem gas fluxes (CO2, CH4, N2O) and to compare experi...

doi.org

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Reposted by Joseph Gaudard

Critical Mass Bergen @criticalmassbergen.bsky.social · 15d

Next critical mass is this Friday, September 26. We meet at the blue stone 18:00. After some cycling in the city center we finish the Mass at Bergen Kjøtt, where the will be an open bar and soup for everybody 👀🥳

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Joseph Gaudard @jogaudard.bsky.social · 16d

fluxible will have a poster at the #ITEX meeting next week!

I am testing an idea: opening a github discussion for the conference in case we want to keep talking after the session ;)
@btwnthefjords-uib.bsky.social

Plant-Functional-Trait-Course fluxible Itex Meeting 2025 · Discussions

Explore the GitHub Discussions forum for Plant-Functional-Trait-Course fluxible in the Itex Meeting 2025 category.

github.com

Reposted by Joseph Gaudard

Critical Mass Bergen @criticalmassbergen.bsky.social · 16d

#cycling in #bergen sometimes feel very much like dancing alone...

#sykkel #sikkerheten #criticalmass #safecycling

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Joseph Gaudard @jogaudard.bsky.social · 25d

I mean, even Spiderman joined

Critical Mass Bergen @criticalmassbergen.bsky.social · 25d

Whether you are in a trailer, at the front of a cargobike, on your new super fast racing bike, or on a tricycle, you are welcome at the #criticalmass #bergen

Joseph Gaudard @jogaudard.bsky.social · 26d

Here are the different elapsed times for different version of fluxible and different output options for flux_plot
pdfpages produces nice A4 landscape pdf pages
longpdf produces a single long pdf document as wide as an A4 landscape page and as long as necessary

Joseph Gaudard @jogaudard.bsky.social · 27d

fluxible CRAN update (v1.3.2)
The #ggplot2 update highlighted a bug in flux_plot, breaking it. It is now fixed and on its way to CRAN.
The fix also made flux_plot much faster when exporting plots as pdfpages.

#rstats #ecosystemgasfluxes #carbonfluxes

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Reposted by Joseph Gaudard

Critical Mass Bergen @criticalmassbergen.bsky.social · 28d

August aftermass!

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Joseph Gaudard @jogaudard.bsky.social · Sep 6

I told you we were cool.

Critical Mass Bergen @criticalmassbergen.bsky.social · Sep 5

August #criticalmass !
Such good vibes & good people

#sykkel #cycling #safecycling #sikkerheten #bergen

Joseph Gaudard @jogaudard.bsky.social · Sep 3

Hey #rstats, check this out!

Eline Rentier @elinerentier.bsky.social · Sep 3

New R-package alert! 🚨

With tabs it has never been easier to reconstruct altitudinal shifts of biogeographical systems over time. Whether in the ocean 🏝️, shallow seas 🪸 or mountains ⛰️; tabs can project spatial configurations shaped by climatic conditions.
➡️ doi.org/10.21425/fob...

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Reposted by Joseph Gaudard

trick van treat @derek.bike · Aug 31

here’s a version where the POV is blacked out whenever the driver takes their eyes off the road

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Reposted by Joseph Gaudard

Critical Mass Bergen @criticalmassbergen.bsky.social · Sep 1

Der det er en vilje, er det en sykkelvei!

#sykkel #cycling #safecycling #sikkerheten #bergen #criticalmass

Der det er en vilje, er det en sykkelvei

Den 29. august deltok 135 syklister på Critical Mass og fylte plassen som til vanlig uten spørsmål overlates til bilene. I én time snudde de opp ned på byens vante bilde. Det ble en stor fest og et…

criticalmassbergen.com

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Reposted by Joseph Gaudard

Critical Mass Bergen @criticalmassbergen.bsky.social · Aug 31

Den 29. august deltok 135 syklister på #criticalmass og fylte plassen som til vanlig uten spørsmål overlates til bilene. I én time snudde de opp ned på byens vante bilde.

Vi hindrer ikke trafikken, vi er trafikken!

#sykkel #cycling #safecycling #sikkerheten #bergen

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Reposted by Joseph Gaudard

Prof. Vigdis Vandvik @vvandvik.bsky.social · Aug 28

Come work with us!

Fully funded #PhD position in global change ecology - working in a cross-disciplinary cohort of 8 PhD students studying mountains in transition. 🧪🌐🏔️ @btwnthefjords-uib.bsky.social @cesam-uib.bsky.social

www.jobbnorge.no/en/available...

PhD Research Fellow in global change ecology (285493) | University of Bergen

Job title: PhD Research Fellow in global change ecology (285493), Employer: University of Bergen, Deadline: Wednesday, October 1, 2025

www.jobbnorge.no

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Reposted by Joseph Gaudard

Critical Mass Bergen @criticalmassbergen.bsky.social · Aug 28

Tomorrow's ride will start at 18:00 from Den Blå Steinen and end up at Laugaren (sauna and bar Rommet).
Join us, make yourself seen, take space, be loud! WE ARE TRAFFIC!
criticalmassbergen.com/critical-mas...

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Joseph Gaudard @jogaudard.bsky.social · Aug 26

Working with an LI7500 tent setup? Here is all you need to process your data!
plant-functional-trait-course.github.io/fluxible/art...

With bonus function import7500 (licoread R package) to import data from an LI-7500
jogaudard.github.io/licoread/art...

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Using fluxible with the Li7500

plant-functional-trait-course.github.io

Joseph Gaudard @jogaudard.bsky.social · Aug 26

New features
flux_plot: output longpdf is faster and easier to handle than pdfpages, facet IDs can be customized
flux_calc: mmol/mol as concentration unit added
flux_fitting: more flexibility in selecting the focus window with argument cut_direction

3/4

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Joseph Gaudard @jogaudard.bsky.social · Aug 26

New functions
flux_drygas: wet air correction
flux_diff: calculates GPP and transpiration rate

plant-functional-trait-course.github.io/fluxible/new...

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Ecosystem Gas Fluxes Calculations for Closed Loop Chamber Setup

Toolbox to process raw data from closed loop flux chamber (or tent) setups into ecosystem gas fluxes usable for analysis. It goes from a data frame of gas concentration over time (which can contain se...

plant-functional-trait-course.github.io

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Joseph Gaudard @jogaudard.bsky.social · Aug 26

fluxible R package CRAN update (v1.3.0): new functions, vignette for tent setup, various fixes, and a logo!
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#rstats #ecosystemgasfluxes #carbonfluxes
@btwnthefjords-uib.bsky.social @hilaryrosed.bsky.social @jonastrepel.bsky.social @martabaumane.bsky.social @kristabirk.bsky.social

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