knimest.bsky.social
@knimest.bsky.social
Reposted
If you are interested in more R graphics with knime I can offer this collection
medium.com/p/9241e033e4ac
Exploring the Power of R Graphics with KNIME: A Collection of Examples
Low-code data visualizations to enrich your data storytelling
medium.com
November 18, 2024 at 9:05 PM
Reposted
Great work @cedricgraebin.bsky.social ! Reminds me of the early workflows on myExperiment back in the early days of #KNIME (gulp! 12y ago  😬)
www.myexperiment.org/workflows/26...
myExperiment - Workflows - RDKit-bioisosteres (sauberns) [KNIME Workflow]
www.myexperiment.org
November 27, 2024 at 4:53 AM
Reposted
diving deep on tools such as KNIME and its chemistry extensions - you can do some nice things with it, and we have been developing some tools with the platform as part of the free resources available at wcair.dundee.ac.uk/training/tra....
November 19, 2024 at 9:13 AM
Reposted
🔍 Webinar Highlights:
• Molecular descriptor calculations
• 3D coordinate generation
• Molecular fingerprinting techniques
• Structural pattern identification with SMARTS syntax
• Data analysis of calculated descriptors
• Seamless integration with KNIME and Python
November 19, 2024 at 7:45 AM
Reposted
It would work the same way for KNIME or DataWarrior. KNIME can read XLSX files directly and can interpret structures submitted as SMILES, MOL, etc, if you add chemistry-enabled extensions (RDKit, Indigo, CDK). DataWarrior can import CSV files if I remember well.

p.s.: both are free and open-source
October 22, 2024 at 8:39 AM
Reposted
All of that using an open-source software exploring the potential of a open-access database!
November 25, 2024 at 3:09 PM
Reposted
Using the other #knime components I published, you can:
- from the chemical structure (SMILES), get the molecule ID
- from the molecule ID, get the biological activities reported for that compound and the document ID where they are
- from the document ID, get the reference!
November 25, 2024 at 3:08 PM