Lisa
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lisa-sorghum.bsky.social
Lisa
@lisa-sorghum.bsky.social
C4 grasses, hydraulics, developmental biology, single cell, plant physiology, anatomy, and everything in between
📍 PhD candidate Gregory & Helliker lab, University of Pennsylvania
Reposted by Lisa
Genomic insights into stepwise selection reshaping fruit traits and male-biased selection driving hermaphroditism in papayas #research #MolecularPlant cell.com/molecular-pl...
December 30, 2025 at 10:57 AM
Reposted by Lisa
A Single-Cell-Resolution Spatial Transcriptomic Atlas Decodes Wheat Spike Development and Yield Potential #resource #MolecularPlant cell.com/molecular-pl...
December 25, 2025 at 8:07 AM
Reposted by Lisa
PlantscRNAdb 4.0: Improved marker identification and annotation under a cell type uniformity for plants #resource #MolecularPlant cell.com/molecular-pl...
December 25, 2025 at 8:08 AM
Reposted by Lisa
Looking forward to speaking at this event!
🗓️ Mark your calendars! The Norwich #SingleCell and #Spatial Symposium with the @uniofeastanglia.bsky.social returns in 2026!

Register your interest now to join us 08-09 July, exploring the latest technologies, research, and applications in single-cell and spatial genomics.
Norwich Single-Cell and Spatial Symposium 2026
Bringing together the international single-cell and spatial community for a two-day discussion across model and non-model systems.
buff.ly
December 19, 2025 at 7:05 PM
Reposted by Lisa
Engineering plant stress responses to combat climate change
nph.onlinelibrary.wiley.com/doi/10.1111/...

#Commentary by Jones highlighting the recent work by Bowerman et al.
nph.onlinelibrary.wiley.com/doi/10.1111/...
December 16, 2025 at 12:11 AM
Reposted by Lisa
Modelling stomatal mechanics: a critical review

Tan et al.

nph.onlinelibrary.wiley.com/doi/10.1111/...
December 16, 2025 at 5:19 AM
Reposted by Lisa
GWAS has been an incredible discovery tool for human genetics: it regularly identifies *causal* links from 1000s of SNPs to any given trait. But mechanistic interpretation is usually difficult.

Our latest work on causal models for this is out yesterday:
www.nature.com/articles/s41...
A short🧵:
Causal modelling of gene effects from regulators to programs to traits - Nature
Approaches combining genetic association and Perturb-seq data that link genetic variants to functional programs to traits are described.
www.nature.com
December 11, 2025 at 5:54 PM
Reposted by Lisa
Abiotic Stress-Mediated Modulation of the tncRNome: Unraveling tRNA-Derived RNA Networks in Plant Adaptive Responses https://www.biorxiv.org/content/10.64898/2025.12.04.692324v1
December 8, 2025 at 4:47 PM
Reposted by Lisa
Ecole d’été “Saclay Plant Sciences” (SPS) 2026 : Une formation immersive en « single cell RNAseq » végétal - Versailles – 28 juin au 3 juillet 2026
Ecole d’été “Saclay Plant Sciences” (SPS) 2026 : Une formation immersive en « single cell RNAseq » végétal - Versailles – 28 juin au 3 juillet 2026
Le réseau « Saclay Plant Sciences » (SPS) organise en 2026 une Ecole d’été dédiée aux approches de single cell RNAseq (scRNAseq) appliquées aux plantes. Pendant cinq jours, doctorants et post-doctorants pourront se former à toutes les étapes d’un projet de scRNAseq : conception expérimentale, préparation d’échantillons, choix des protocoles, analyses bioinformatiques et interprétation des résultats.   L’Ecole d’été est coordonnée par Bruno Guillotin de l’IPS2, et les sessions, animées par des experts de l’IPS2, de l’IJPB, du VIB Ghent et de l’Institut Pasteur, mettront en lumière les spécificités des modèles végétaux et aideront les participants à sélectionner les méthodes les plus pertinentes pour leurs travaux.   Limitée à 20 participants, cette école internationale offrira un cadre privilégié pour échanger, poser des questions et approfondir ses compétences en scRNAseq végétal.   Lien pour les inscriptions (date limite 12 mars 2026)
ips2.u-psud.fr
December 8, 2025 at 8:19 AM
Reposted by Lisa
Domestication and Improvement Reshaped the Genomic Architecture of Abiotic Stress Tolerance in Sunflower https://www.biorxiv.org/content/10.64898/2025.12.03.692181v1
December 8, 2025 at 3:32 AM
How do you help a first-year undergrad who’s excited about research figure out what kind of science they’re into?
They’re at a school with very limited research opportunities, and faculty talks feel overwhelming to follow.
Any suggestions for low-barrier ways for them to explore different fields?
December 7, 2025 at 7:06 PM
Reposted by Lisa
Determining the age of single cells using scBayesAge https://www.biorxiv.org/content/10.64898/2025.12.04.692166v1
December 7, 2025 at 3:30 AM
Reposted by Lisa
Single-cell multi-omic characterization of the soybean root response to cyst nematode infection https://www.biorxiv.org/content/10.64898/2025.12.05.692575v1
December 5, 2025 at 4:02 PM
Reposted by Lisa
To be or not to be: cell-specific expression profiles reveal drivers of cell identity in C4 #evolution

📖 nph.onlinelibrary.wiley.com/doi/10.1111/...

👆 #Commentary by Yee & Furbank on this article by Sun et al. 👇

📖 nph.onlinelibrary.wiley.com/doi/10.1111/...

@biology.anu.bsky.social #PlantScience
December 4, 2025 at 3:35 PM
Reposted by Lisa
Integrating Pan-genome, GWAS, and Interpretable Machine Learning to Prioritize Trait-Associated Structural Variations in Setaria italica #resource #PlantCommunications cell.com/plant-commun...
December 2, 2025 at 6:59 AM
Reposted by Lisa
Wild relatives of crop species provide untapped genetic potential for ecological resilience. We looked at 320 wild relatives of Barley and combined physiology experiments with GWAS data to determine variation in light capture and photoprotection 🌾🧬📊🌱 check it out here!
doi.org/10.1101/2025...
Extensive photophysiological variation in wild barley is linked to environmental origin
### Competing Interest Statement The authors have declared no competing interest.
eur03.safelinks.protection.outlook.com
April 23, 2025 at 1:21 PM
Reposted by Lisa
New Article: "Modelling the productivity of opportunity crops across Africa under climate change in support of the Vision for Adapted Crops and Soils" rdcu.be/eR3Cl

African opportunity crops: several projected to outperform staples (particularly roots and tubers).
November 27, 2025 at 11:43 AM
Reposted by Lisa
Together with @c-spirit.org, the PCA has curated 186 single cell plant papers to help with ingestion into the EBI's Single Cell Expression Atlas!

You can view this list of papers here: www.plantcellatlas.org/scea-papers....
November 26, 2025 at 3:23 PM
Happy thanksgiving!
Half of my folks in the lab are Americans. So, we get the chance to celebrate American Thanksgiving in Canada.

We had enough pie, we call it pie-per-person 🥧
November 28, 2025 at 5:14 AM
I just found out that becoming a science consultant for films is an actual career path you can pursue after a PhD.
November 28, 2025 at 3:43 AM
Reposted by Lisa
🍭🍃 RESEARCH 🍃🍭

Trehalose 6-phosphate, a sugar signalling metabolite, is mainly present in the bundle sheath cells of Setaria viridis leaves - Tonetti et al.

🔗 doi.org/10.1093/jxb/...

#PlantScience 🧪
November 27, 2025 at 10:33 AM
Reposted by Lisa
🌡️🌾 EDITOR'S CHOICE 🌾🌡️

In the C4 grass Setaria viridis, the β form of Rubisco activase is essential for growth at 25°C, while the α form supports photosynthesis under heat stress - Hotto et al.

🔗 doi.org/10.1093/jxb/...

#PlantScience 🧪
November 26, 2025 at 1:58 PM
Reposted by Lisa
Arrival of Bruno Guillotin at IPS2 (SPS)
Arrival of Bruno Guillotin at IPS2 (SPS)
Bruno Guillotin has joined the IPS2 unit (Institute of Plant Sciences Paris-Saclay) as a CNRS Research Scientist. He was recruited in February 2025.   After studying Plant Biology and Physiology, he completed his PhD between 2013 and 2016 at the Plant Science Research Laboratory (LRSV – Toulouse) under the supervision of Guillaume Bécard and Jean-Philippe Combier. His doctoral work focused on the autoregulation of arbuscular mycorrhizal symbiosis in Medicago truncatula.   Following his PhD, he turned his attention to the study of root development in various plant species as a postdoctoral researcher in Kenneth Birnbaum’s group at New York University. There, supported by a Human Frontiers Long-Term Fellowship, he developed numerous protocols for single-cell transcriptomics (single-cell RNA-seq), which he implemented to study gene evolution across agronomically relevant species (maize, sorghum, millet), as well as to investigate cell regeneration in the roots of Arabidopsis thaliana.   In 2025, he was appointed as a CNRS Research Scientist and was also awarded the CNRS–INSERM ATIP-Avenir grant. At IPS2, Bruno Guillotin’s research focuses on understanding how plant cells communicate through plasmodesmata, aiming to identify which proteins and peptides move from one cell to another and contribute to organ morphogenesis in plants. His work combines single-cell RNA-seq, proteomics, genomics, and bioinformatics approaches.   Contact email : [email protected]
ips2.u-psud.fr
November 24, 2025 at 3:02 PM
Reposted by Lisa
Climate and hybridization shape #stomatal trait evolution in #Populus

📖 nph.onlinelibrary.wiley.com/doi/10.1111/...
by Zavala-Paez et al.

@WileyPlantSci @michellezavala.bsky.social @jillahamilton.bsky.social
November 19, 2025 at 10:27 AM