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msmicrobiocode.bsky.social
Zoe Anne Dyson
@msmicrobiocode.bsky.social
530 followers 610 following 5 posts
Assistant Professor @LSHTM. Co-Deputy Director of the LSHTM DASH Centre. Co-coordinator of the Global Typhoid Genomics Consortium. Editor at mSystems. Bacterial pathogen genomics, genetic epidemiology, transmission dynamics, and AMR. Views mine. She/her
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msmicrobiocode.bsky.social
Zoe Anne Dyson @msmicrobiocode.bsky.social · May 9
🧬 Out today 🧬 - our TyphiNET
#AMR surveillance dashboard for #typhoid

Use TyphiNET to view genome-derived data on global and national annual trends in AMR and circulating pathogen genotypes via any standard web browser.

genomemedicine.biomedcentral.com/articles/10....
The TyphiNET data visualisation dashboard: unlocking Salmonella Typhi genomics data to support public health - Genome Medicine
Background Salmonella enterica subspecies enterica serovar Typhi (abbreviated as ‘Typhi’) is the bacterial agent of typhoid fever. Effective antimicrobial therapy reduces complications and mortality; ...
genomemedicine.biomedcentral.com
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Reposted by Zoe Anne Dyson
medrxivpreprint.bsky.social
medRxivpreprint @medrxivpreprint.bsky.social · Jun 30
Distribution of capsule and O types in Klebsiella pneumoniae causing neonatal sepsis in Africa and South Asia: meta-analysis of genome-predicted serotype prevalence and potential vaccine coverage https://www.medrxiv.org/content/10.1101/2025.06.28.25330253v1
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Reposted by Zoe Anne Dyson
lshtm-dash.bsky.social
Data & Statistical Science for Health, LSHTM @lshtm-dash.bsky.social · Jun 23
🚨 Last chance to sign up for an online space at Thursday's symposium on target trial emulation (TTE) and other frameworks

Sign up 🔽
lshtm-dash.bsky.social
Data & Statistical Science for Health, LSHTM @lshtm-dash.bsky.social · Jun 18
📈 We still have some spaces online for people to join next week's symposium on target trial emulation (TTE) and other frameworks, open to everyone working in #datascience #biostatistics & #clinicaltrials

Sign up 🔽
bit.ly/TTE_25
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msmicrobiocode.bsky.social
Zoe Anne Dyson @msmicrobiocode.bsky.social · Jun 25
Wonderful presentation @nisbetalice.bsky.social !
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Reposted by Zoe Anne Dyson
emmabeansworth.bsky.social
Emma Waters @emmabeansworth.bsky.social · Jun 25
Coming up next at #I3S #I3Scongress is @nisbetalice.bsky.social showing a summary of 20 years of #typhoidal #Salmonella in England & Wales. She is excited to present here as she prepares this for publication and as this is her first international talk. We are hanging around if you have any Qs.
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Reposted by Zoe Anne Dyson
senjutisaha.bsky.social
senjutisaha.bsky.social @senjutisaha.bsky.social · Jun 23
One ceftriaxone-resistant #typhoid case last year set us on a path that is now live on Emerging Infectious Diseases.
47 cases in months, resistance rose from 0 to 5%. We spoke with patients, sequenced samples. 4.3.1.2.B1 lineage+blaCTX-M-15 on pCROB1. #AMR #PublicHealth
wwwnc.cdc.gov/eid/article/...
Outbreak of Ceftriaxone-Resistant <em>Salmonella enterica</em> Serovar Typhi, Bangladesh, 2024
Ceftriaxone-Resistant <em>Salmonella</em> Typhi, Bangladesh
wwwnc.cdc.gov
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Reposted by Zoe Anne Dyson
lshtm-dash.bsky.social
Data & Statistical Science for Health, LSHTM @lshtm-dash.bsky.social · May 12
🥇 Congratulations to @msmicrobiocode.bsky.social
who was one of the winners of the @lshtmamrcentre.bsky.social Publication Prize

She received the Staff Prize for her work analysing AMR typhoid infections in Bangladesh, Nepal, and Malawi

Find out why 🔽
www.lshtm.ac.uk/research/cen...
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msmicrobiocode.bsky.social
Zoe Anne Dyson @msmicrobiocode.bsky.social · May 9
A huge thank you to all involved - especially members of the Global Typhoid Genomics Consortium, @katholt.bsky.social , @meganecarey.bsky.social , @louisecerdeira.bsky.social, and Vandana Sharma!
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msmicrobiocode.bsky.social
Zoe Anne Dyson @msmicrobiocode.bsky.social · May 9
🧬 Out today 🧬 - our TyphiNET
#AMR surveillance dashboard for #typhoid

Use TyphiNET to view genome-derived data on global and national annual trends in AMR and circulating pathogen genotypes via any standard web browser.

genomemedicine.biomedcentral.com/articles/10....
The TyphiNET data visualisation dashboard: unlocking Salmonella Typhi genomics data to support public health - Genome Medicine
Background Salmonella enterica subspecies enterica serovar Typhi (abbreviated as ‘Typhi’) is the bacterial agent of typhoid fever. Effective antimicrobial therapy reduces complications and mortality; ...
genomemedicine.biomedcentral.com
2 8 13
Reposted by Zoe Anne Dyson
lshtmamrcentre.bsky.social
LSHTM AMR Centre @lshtmamrcentre.bsky.social · May 6
📣 🎉 Congratulations to Ms Gladys and @msmicrobiocode.bsky.social on winning our 2025 Publication Prize at @lshtm.bsky.social 🏆

Read more about their winning papers and impactful AMR research🔬 👇
bit.ly/4iM7uCh
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Reposted by Zoe Anne Dyson
lshtmamrcentre.bsky.social
LSHTM AMR Centre @lshtmamrcentre.bsky.social · May 6
@msmicrobiocode.bsky.social won the Staff Prize for her work revealing that most AMR typhoid infections in Bangladesh, Nepal, and Malawi are driven by ongoing local transmission of existing resistant strains—not new variants.
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msmicrobiocode.bsky.social
Zoe Anne Dyson @msmicrobiocode.bsky.social · Feb 2
Good luck ☺️
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msmicrobiocode.bsky.social
Zoe Anne Dyson @msmicrobiocode.bsky.social · Feb 2
AmpliconTyper tool for analysing ONT multiplex PCR data from environmental and other mixed sources
Amplicon sequencing is a popular method for understanding the diversity of bacterial communities in mixed samples as exemplified by 16S rRNA metagenome sequencing. This approach has been extended into...
www.biorxiv.org
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Reposted by Zoe Anne Dyson
rrwick.bsky.social
Ryan Wick @rrwick.bsky.social · Dec 31
New year, new assemblies!
I'm excited to announce Autocycler, my new tool for consensus assembly of long-read bacterial genomes!
It's the successor to Trycycler, designed to be faster and less reliant on user intervention.
Check it out: github.com/rrwick/Autoc...
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A tool for generating consensus long-read assemblies for bacterial genomes - rrwick/Autocycler
github.com
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