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NFDI4BIOIMAGE @nfdi4bioimage.bsky.social · 12h

@nfdi4bioimage.bsky.social Task Area Leaders Josh Moore and Christian Tischer will introduce participants to the history and basics of OME-Zarr at the international 2025 OME-NGFF Symposium from November 10–11 in Zurich, SW.
Register here:
👉 www.ema.uzh.ch/de/register/...
Picture by BioVisionCenter

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NFDI4BIOIMAGE @nfdi4bioimage.bsky.social · 6d

🌟 #MeetOurDataStewards #5: Mohsen Ahmadi

He is a a biochemist and works with image microscopy from plasma medicine at @inpgreifswald.bsky.social. If you need help with organizing your microscopy image data, feel free to contact Mohsen.

👉 nfdi4bioimage.de/about-us/dat...

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NFDI4BIOIMAGE @nfdi4bioimage.bsky.social · 7d

Save the date for the panel discussion “The Power of Sharing: Open Data in Bioimage Analysis” on October 24, 2025. 🤝
The discussion with experts from various fields related to imaging is organized by Young Microscopists and Image Analysts (YMIA).
Register here:
👉 gerbi-gmb.de/machform/vie...

Poster for the panel discussion: The Power of Sharing: Open Data in Bio-image Analysis on October 24, 2025 starting 1:30 pm on site at the KUBUS Hall 1A, UFZ Leipzig or online starting at 2:00 pm. In the lower part of the poster the experts are listed with pictures and names, as well as the moderation.

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NFDI4BIOIMAGE @nfdi4bioimage.bsky.social · 8d

In addition to his work @scadsai.bsky.social, @haesleinhuepf.bsky.social works @nfdi4bioimage.bsky.social as task area leader.
Here you can listen to Robert's interview in the podcast series “The Microscopists".

👉 themicroscopists.bitesizebio.com/episodes/rob...

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NFDI4BIOIMAGE @nfdi4bioimage.bsky.social · 13d

🌟 #MeetOurDataStewards – Highlight Workshop/Publication #4: Vanessa Fuchs
Discover I3D:bio's great OMERO training slides, workshop materials and presentations. Valuable resource – not just for us data stewards at @nfdi4bioimage.bsky.social but also for you. Check it out!
gerbi-gmb.de/i3dbio/i3dbi...

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NFDI4BIOIMAGE @nfdi4bioimage.bsky.social · 14d

🌟 #MeetOurDataStewards – Highlight Training Material #4: Vanessa Fuchs

Discover #i3dbio’s great OMERO training material: general training slides, workshop material for using #OMERO and help to ensure smooth IT & Core Facility collaboration.

👉 Check it out: gerbi-gmb.de/i3dbio/i3dbi...

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NFDI4BIOIMAGE @nfdi4bioimage.bsky.social · 14d

Having trouble with fragmented data sets?
The workflow „Linking of Research (Meta-)data in OMERO to Foster FAIR Data in #PlasmaScience“ helps to manage images and metadata according to #FAIR principles, combining #Plasma-MDS and #REMBI standards.
Find more information here: doi.org/10.5281/zeno...

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NFDI4BIOIMAGE @nfdi4bioimage.bsky.social · 19d

Do you know #NFDI?
5 Life Science consortia asked that at the #HHU Core Facility Symposium and introduced services and concepts for RDM.
NFDI4Immuno, NFDI4Health, @nfdi4plants.bsky.social, @nfdi4microbiota.bsky.social & NFDI4BIOIMAGE showed how #FAIRdata connects disciplines.

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NFDI4BIOIMAGE @nfdi4bioimage.bsky.social · 19d

Our 3rd quarterly @nfdi4bioimage.bsky.social newsletter is out!

Find information on the last months' political and strategic developments, links to important papers, recordings and training material as well as an overview of upcoming events.

To the newsletter:
👉 nfdi4bioimage.de/community-in...

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NFDI4BIOIMAGE @nfdi4bioimage.bsky.social · 20d

🌟#MeetOurDataStewards: #4: Vanessa Fuchs

In today's blog post, Vanessa tells you about her first steps toward making her data reusable. In the end, the data was accessible, annotated, and reusable and her colleague was able to reanalyze it.

👉 Find out more: nfdi4bioimage.de/news/news-de...

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NFDI4BIOIMAGE @nfdi4bioimage.bsky.social · 22d

What to do if you have extraordinary size data but no extraordinary local memory? 😱

At the @grcib2025.bsky.social, @joshmoore.bsky.social addressed this issue in the talk “When Data Doesn’t Fit – A Bioimaging Story from Files to FAIR”.

👉 Interested? zenodo.org/records/1708...

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NFDI4BIOIMAGE @nfdi4bioimage.bsky.social · 27d

🌟 #MeetOurDataStewards #4: Vanessa Fuchs

Vanessa believes that #OpenScience and #DataManagement make it easy to share #Data with others, publish it in repositories, and enable researchers to reuse it. This adds value for the scientific community and ensures the sustainable use of public funding.

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NFDI4BIOIMAGE @nfdi4bioimage.bsky.social · 28d

✍ If you're having difficulty writing #BioimageAnalysis code that enables others to follow your workflow, have a look at @haesleinhuepf.bsky.socials slides on „Reproducible Bio-Image Analysis using Python, Napari, Jupyter and AI“ from the #EMBOlsm25.
To the slides: 👉 doi.org/10.5281/zeno...

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Reposted by NFDI4BIOIMAGE

German National Research Data Infrastructure (NFDI) @nfdi.de · Sep 3

Im nächsten #NFDITalk geht es um "Datenschutz, Wissenschaft und Forschung – Widerspruch oder Chance?".

🗓️ 15.09., 16 Uhr
🎤 Sprecher: Tino Melzer, Landesdatenschutzbeauftragter für Thüringen

➡️ YouTube: www.youtube.com/live/ovyXGR5...
➡️ Zoom: www.nfdi.de/talks

#FDM #RDM #NFDI #forschungsdaten

NFDITalk (15 Sep 2025): Datenschutz, Wissenschaft und Forschung – Widerspruch oder Chance?

In unseren NFDITalks präsentieren Wissenschaftler:innen und Expert:innen aus verschiedenen Disziplinen spannende Themen rund um die NFDI und Forschungsdaten. In dieser Folge spricht Tino Melzer, Lande...

www.youtube.com

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NFDI4BIOIMAGE @nfdi4bioimage.bsky.social · Sep 4

🌟#MeetOurDataStewards Community Support #4: Vanessa Fuchs

She works at the Center for Advanced Imaging at @hhu.de and can help with any queries about organizing your data and annotating it with #Metadata in #OMERO.
Feel free to contact her if you need help!

👉 nfdi4bioimage.de/about-us/dat...

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NFDI4BIOIMAGE @nfdi4bioimage.bsky.social · Sep 1

Interested in data management in microscopy not only in the light but also in the electron (microscopy) world? Chat with Conni Wetzker at the shared booth (No. 57) of @nfdi4bioimage.bsky.social, @fairmat.bsky.social and MatWerk at the #MC2025 in Karlsruhe.
To our poster: zenodo.org/records/1701...

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NFDI4BIOIMAGE @nfdi4bioimage.bsky.social · Aug 28

#CoRDI2025 came to an end as a big success. Shoutout to @nfdi.de & WZL @rwth.bsky.social for a great event. Some of us look ahead to participate in the #Base4NFDI user conference. Others drive home reaffirmed once more in our enthusiasm to embrace FAIR data & tackle challenges for our community.

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NFDI4BIOIMAGE @nfdi4bioimage.bsky.social · Aug 28

🌟#MeetOurDataStewards #3: Riccardo Massei
Riccardo's first project as a Data Steward at @nfdi4bioimage.bsky.social involved managing and publishing an HCS zebrafish dataset by using the #VAST Bio-Image platform and #OMERO. 🐟

👉 nfdi4bioimage.de/news/news-de...

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NFDI4BIOIMAGE @nfdi4bioimage.bsky.social · Aug 28

Julia Thönnißen from @fz-juelich.de demonstrates how large-scale 3D imaging data from neuroscience research can be handled & analyzed without the need for data duplication. Leveraging #OME-Zarr, the #tiamat tool developed at FZJ enables seamless work at scale. @nfdi4bioimage.bsky.social #CoRDI2025

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NFDI4BIOIMAGE @nfdi4bioimage.bsky.social · Aug 27

The #CoRDI2025 is an excellent opportunity for exchange with fellow consortia & many initiatives building research data infrastructure for excellent science. Come find @nfdi4bioimage.bsky.social at the Market of Oppurtunities on the ground floor of C.A.R.L building to learn about our services.

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Reposted by NFDI4BIOIMAGE

Chris Schmidt @schmchris.bsky.social · Aug 26

An enlightening opening keynote by Rob Finn from @ebi.embl.org at #CoRDI2025 in Aachen. Among others, he highlighted the rapid growth of data in the field of imaging as well as challenges of data handling and sharing across scales and technologies.
Looking forward to an exciting conference ahead.

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Reposted by NFDI4BIOIMAGE

Joel Lüthi @joelluethi.bsky.social · Aug 25

We're happy to announce the 2025 International OME-NGFF workshop 🎉

📅 Dates:
- Symposium: Nov 10–11, 2025
- Hackathon: Nov 12–14, 2025

📍 Location: Zurich, Switzerland

Full details & registration: www.biovisioncenter.uzh.ch/en/events/Up...

#bioimaging #openscience #OMENGFF #OMEZarr

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Visual of segmented human induced pluripotent stem cells with the key workshop dates: Symposium on November 10-11, Hackathon on November 12-14th in Zurich Switzerland

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NFDI4BIOIMAGE @nfdi4bioimage.bsky.social · Aug 27

Amazing talk by Björn Grüning from @galaxyproject.bsky.social @uni-freiburg.de & task area leader @nfdi4bioimage.bsky.social on the power of Galaxy. Cloud-deployed workflows as a basis for reuse across domains. An example? Voronoi segmentation in bioimaging, forest imagery & astronomy. #CoRDI2025 👏

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Reposted by NFDI4BIOIMAGE

Chris Schmidt @schmchris.bsky.social · Aug 27

Large, complex data require the right environments to handle and process. Dirk v. Suchodoletz and his team create an open source virtual desktop infrastructure fit for bioimage data and more. @nfdi4bioimage.bsky.social @nfdi4plants.bsky.social #CoRDI2025

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NFDI4BIOIMAGE @nfdi4bioimage.bsky.social · Aug 27

How to make bioimage analysis workflows #FAIR? Riccardo Massei shows how to use efficient RDM & analysis pipelines in #Galaxy. As a @nfdi4bioimage.bsky.social Data Steward, Riccardo supports the community with expertise in data handling for high-content screening, image analysis & more. #CoRDI2025

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