schmchris.bsky.social
Chris Schmidt
@schmchris.bsky.social
60 followers 57 following 12 posts
Scientific Project Manager at the German Cancer Research Center (DKFZ) in Heidelberg, project coordination for NFDI4BIOIMAGE and I3D:bio, biologist by training (immunology, biochemistry, cell biology)
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nfdi4bioimage.bsky.social
NFDI4BIOIMAGE @nfdi4bioimage.bsky.social · Aug 27
Poster Session at #CoRDI2025. Here is @joshmoore.bsky.social presenting how cloud-ready next-generation file formats like #OME-Zarr enable federated repositories with large N-dimensional arrays at peta-scale.
#OME-NGFF @nfdi4bioimage.bsky.social
Find the poster on C.A.R.L level 2 @rwth.bsky.social
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schmchris.bsky.social
Chris Schmidt @schmchris.bsky.social · Aug 27
Large, complex data require the right environments to handle and process. Dirk v. Suchodoletz and his team create an open source virtual desktop infrastructure fit for bioimage data and more. @nfdi4bioimage.bsky.social @nfdi4plants.bsky.social #CoRDI2025
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Chris Schmidt @schmchris.bsky.social · Aug 26
An enlightening opening keynote by Rob Finn from @ebi.embl.org at #CoRDI2025 in Aachen. Among others, he highlighted the rapid growth of data in the field of imaging as well as challenges of data handling and sharing across scales and technologies.
Looking forward to an exciting conference ahead.
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schmchris.bsky.social
Chris Schmidt @schmchris.bsky.social · Jun 27
Join Riccardo Massei, Michele Bortolomeazzi, & me -representing @nfdi4bioimage.bsky.social & #I3Dbio - for an introduction to the new Helmholtz #OMERO instance hosted in HIFIS by DigIT Infrastructure & Scientific Computing at @www.helmholtz-munich.de
🙏to @helmholtzimaging.bsky.social for organizing!
helmholtzimaging.bsky.social
Helmholtz Imaging @helmholtzimaging.bsky.social · Jun 27
New #opensource cloud-based imaging resource: #OMERO for @helmholtz.de is now live🎉

Store, visualize & analyze complex scientific image data 👉 omero.helmholtz-munich.de

Join the July 17 workshop (25 spots) 👉 events.hifis.net/event/2734/

#HIconference2025 #imaging #HIFIS @www.helmholtz-munich.de
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Reposted by Chris Schmidt
the-node.bsky.social
the Node @the-node.bsky.social · Jun 17
In this SciArt profile, we find out more about Henning Falk @falk-illustrations.de‬, who did a PhD in developmental biology, and now enjoys creating science-related cartoons as a freelancer. Check out his recent illustrations about biological data management:
thenode.biologists.com/sciart-profi...
The cartoon was done for German BioImaging (GerBI-GMB) to illustrate the enabling power of research data management (RDM) This cartoon is part of a series of post cards raising awareness for the work of the NFDI4BIOIMAGE consortium. Published under a CC BY 4.0 licence.
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Reposted by Chris Schmidt
nfdi4bioimage.bsky.social
NFDI4BIOIMAGE @nfdi4bioimage.bsky.social · Jun 17
📨 Find out what's new, what's upcoming and what's to read or review in our recent @nfdi4bioimage.bsky.social newsletter.
We have compiled our latest conference contributions, publications and important upcoming events in the field of #BioImaging and #RDM for you.
👉 nfdi4bioimage.de/community-in...
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Reposted by Chris Schmidt
nfdi4bioimage.bsky.social
NFDI4BIOIMAGE @nfdi4bioimage.bsky.social · Jun 12
🌟 #MeetOurDataStewards – Why does #DataManagement matter? #1: Ksenia Krooß 🎥

Ksenia Krooß shares: “It keeps research organized, helps your future self and others, and accelerates science.” Don’t treat it as an afterthought— reach out to your local #RDM office or #NFDI initiative for support.
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Chris Schmidt @schmchris.bsky.social · Jun 5
@joshmoore.bsky.social presenting at #ELMI2025 about the #Bioimaging community's immense efforts to pave the way to OME-Zarr 1.0 -
Stable cloud-readiness for bioimage data is getting real.
Slides available in Zenodo:
doi.org/10.5281/zeno...
@gerbi-gmb.de
@nfdi4bioimage.bsky.social
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Chris Schmidt @schmchris.bsky.social · Jun 5
What a special atmosphere! #ELMI2025 Poster Session 1 on Helix A last night. The perfect environment to exchange with friends & colleagues about #bioimaging #RDM:
- OMERO-vitessce
- IO-FAST initiative
- @nfdi4bioimage.bsky.social Data Stewardship
Talks, Workshops & Poster Session 2 up ahead today!🔬
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Reposted by Chris Schmidt
tom-bssnnt.bsky.social
Tom Boissonnet @tom-bssnnt.bsky.social · Jun 4
Who does microscopy and has never heard of Bio-Formats? You probably used it anyway
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Chris Schmidt @schmchris.bsky.social · Jun 4
Great stimulating discussions about #bioimage data organization in #OMERO led by @tom-bssnnt.bsky.social from #i3dbio at #ELMI2025
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Reposted by Chris Schmidt
gerbi-gmb.de
German BioImaging @gerbi-gmb.de · Jun 3
🥳 We've just signed the Memorandum of Understanding with @globalbioimaging.bsky.social at #ELMI2025! 🥳
With this step, GerBI proudly joins the international network to foster global exchange, training, and collaboration in bioimaging.
@sweidtkamp.bsky.social @janinahanne.bsky.social
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Reposted by Chris Schmidt
openmicroscopy.org
OME @openmicroscopy.org · Jun 4
On #ELMI2025 an ad-hoc Question&Answer session on OMERO went very well, lively discussion with lot of tips on finding the optimal path to successful OMERO adoption in an Institution.
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ritastrack.bsky.social
Rita Strack @ritastrack.bsky.social · Apr 15
I think the @naturemethods.bsky.social editorial is particularly timely this month in support of basic research funding in the life sciences. www.nature.com/articles/s41...
The big picture in science - Nature Methods
Basic science and methods development is essential to ensure that lifesaving advances and improvements to the human condition continue moving forward. Such research needs strong and sustained funding ...
www.nature.com
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Reposted by Chris Schmidt
nfdi4bioimage.bsky.social
NFDI4BIOIMAGE @nfdi4bioimage.bsky.social · Apr 4
🐿️ This week you could meet some of our colleagues at the FDM-Werkstatt in Münster. Various RDM tools were presented, tried out and discussed at the community workshop, including in a session with our @nfdi4bioimage.bsky.social colleague Jens Wendt. He explained how to embed OMERO.iviewer in eLabFTW.
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Reposted by Chris Schmidt
gerbi-gmb.de
German BioImaging @gerbi-gmb.de · Mar 25
🌟 Thank you for an amazing #TiM2025! 🌟
Five days filled with inspiring talks, cutting-edge workshops on #microscopy, #RDM, #ImageAnalysis, and much more!
A huge thank you to all 220 participants for your enthusiasm & contributions!
Special thanks to @gerhardholst.bsky.social for the group picture!
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Chris Schmidt @schmchris.bsky.social · Mar 21
Today, #TiM2025 came to a close after a splendid talk by Anna Kreshuk @ilastik-team.bsky.social, Task Area Leader in @nfdi4bioimage.bsky.social, about making machine learning for bioimage analysis not only better but also more accessible.
Thanks to @gerbi-gmb.de for this exciting & inspiring week!
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gerbi-gmb.de
German BioImaging @gerbi-gmb.de · Mar 21
🔬Lasers in science, lasers on the dance floor! More fantastic moments from Day 4 of #TiM2025: Our #fluorescence party brought both, with a spectacular laser show and live saxophone beats from the amazing Moni Ramoni. 🎷🎶🔥
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Reposted by Chris Schmidt
gerbi-gmb.de
German BioImaging @gerbi-gmb.de · Mar 21
Memorable moments from Day 4 of #TiM2025: Key note speaker @superresolusian.bsky.social provided us inspiring insights into accuracy and reliability in #Fluorescence and #SuperResolution #Microscopy image processing.🔬🎯
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Chris Schmidt @schmchris.bsky.social · Mar 20
Learning big time from our colleagues Guillaume Gay and Julio Mateos-Langerak from @france-bioimaging.bsky.social about Data Management Tools and practices in the French Community at the #TiM2025. Thanks for a great and personalized Workshop! 👏
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Reposted by Chris Schmidt
joshmoore.bsky.social
Josh Moore @joshmoore.bsky.social · Mar 18
Kudos to Matthew Hartley of the @bioimagearchive.bsky.social for his message of global collaboration in the #bioimaging community @ #TiM2025

👏👏👏
A photo of Matthew Hartley of the BioImage Archive standing at a podium in front of a slide showing the flags of 43 different countries which are making use of the image archive.
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Chris Schmidt @schmchris.bsky.social · Mar 19
@anwaiarchit.bsky.social & @cppape.bsky.social demonstrating the power of micro-sam, the napari plugin for the microscopy segment anything model, in their awesome workshop at the #TiM2025 conference in Münsingen. 🔬🦠💻
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Reposted by Chris Schmidt
gerbi-gmb.de
German BioImaging @gerbi-gmb.de · Mar 18
Today we had two fantastic key note talks at #TiM2025. Matthew Hartley enlightened us about #DataSharing through @bioimagearchive.bsky.social
🔬➡️🧑‍🔬
Mayeul Collot invited us into the world of photo-convertable dyes for #highresolutionimaging! 🔴➡️🟢
Many thanks to our amazing speakers!
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Chris Schmidt @schmchris.bsky.social · Mar 18
Learning about image segmentation tools in napari/python with @jo-soltwedel.bsky.social & @zoca-biodev.bsky.social at the #TiM2025.
Excellent Workshops and great people here in Münsingen. 🎓🧑‍🔬 #gerbi-gmb
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Chris Schmidt @schmchris.bsky.social · Mar 17
Bugra Özdemir from @eurobioimaging.bsky.social BioHub demonstrating how to work with #OMEZarr at the #TiM2025 Conference in Münsingen. We're having a great time at TiM and are thrilled to see the power of OME-Zarr in this hands-on workshop.
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