Philipp Niethammer
@niethammerlab.bsky.social
420 followers 360 following 150 posts
Cell biologist interested in how tissues sense and adapt to physical and chemical stress. Wound healing and regeneration. Quantitative imaging approaches. Nuclear mechanotransduction, ROS signaling & metabolism. All opinions are my own.
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niethammerlab.bsky.social
After some limbo, paper #1 finally accepted (i.p.). Watch out for a comprehensively updated version of pubmed.ncbi.nlm.nih.gov/39711539/.
coming soon. My gratitude to the reviewers for their thoughtful suggestions and critical but fair review. Kudos to Joe and Zaza for all the hard work!
niethammerlab.bsky.social
Looking forward to Florida, where my brilliant PhD student Zaza Gelashvili and I are giving back-to-back talks. Among other things, we'll talk about our work on www.biorxiv.org/content/10.1... www.researchsquare.com/article/rs-5..., which will hopefully come out soon in much improved versions!
Reposted by Philipp Niethammer
neilshubin.bsky.social
Your reminder that many of the muscles, nerves and bones you use to hear and talk with correspond to gill structures in fish. 🧪 #evolution #paleontology
niethammerlab.bsky.social
Moment of halt during my morning run: Our Four Freedoms veiled in strongman camo (Camouflage by Ai Weiwei, Roosevelt Island, NYC) - sober testament to civil society regression around the world and my complacency/compliance in witnessing it. fdrfourfreedomspark.org
niethammerlab.bsky.social
Just added a sample count sheet (from Huang & Niethammer, Immunity, 2018) and some databases (sfGO, FishSCT, etc.) to try out and see how the files need to be formatted. Hope this helps!
niethammerlab.bsky.social
Yes, by adjusting an experimental count sheet (published or your own) to the parsable naming convention (see manual) you can integrate it. Same for any other knowledge database, like GO, custom scRNAseq marker sets, etc. LCS can integrate everything into a single network graph.
niethammerlab.bsky.social
First-in-class conceptual mRNAseq analysis - LCS v2.2 (Win) with updated stats, boxplots, alternative IPs, logical IP filtering, synthesizing experiments by Z-score integration, etc. Analyze your count-sheets and listen to cool 1990's D&B (-> LCS icons). Pls report bugs 🙏
github.com/niethamp/Log...
Release LCS_Win_v2.2 · niethamp/LogicalClusteringSuiteWin
The Logical Clustering Suite (LCS) is a MATLAB-based application for the conceptual clustering of gene expression data. Instead of grouping genes by mutual similarity (as in hierarchical clustering...
github.com
Reposted by Philipp Niethammer
lammerdinglab.bsky.social
Final call to register and submit abstracts for the @faseborg.bsky.social conference on the Mechanobiology of the Cell Nucleus (#MBNSRC) to be considered for platform presentations. The conference takes place in Melbourne, FL, Oct. 26-30, 2025. See more info at: events.faseb.org/event/Mechan...
Reposted by Philipp Niethammer
cellsdev.bsky.social
Maybe it's time we rethink the idea that development is a cell centric process? In this beautiful review, María-del-Carmen and @stramerlab.bsky.social discussed how the ECM underlies and influences many morphogenesis processes from wing unfolding to mammary gland development.
doi.org/10.1016/j.cd...
Tissue bending through localized BM growth or dissolution. Alteration in tissue morphology by intrinsic stresses in an assembling BM network. Branching morphogenesis driven by localized deposition of interstitial matrix. Asymmetric tissue expansion through anisotropic BM remodeling.
niethammerlab.bsky.social
Humanties and STEM belong together - contemplative and calculative thinking are two sides of the same coin: curiosity.
Reposted by Philipp Niethammer
rbtownsend.bsky.social
"without my humanities leanings and studies, I would not have been a very good scientist. My humanities classes were a master class in creativity, envisioning new futures and how to think." bit.ly/4of8P8D
Opinion: Gutting humanities signals the end of innovation in business and STEM
Lose the humanities, and you lose the very ground of science and business that depend on it.
bit.ly
Reposted by Philipp Niethammer
luskinglab.bsky.social
Join us for the first Mechanobiology of the Nucleus conference supported by @faseborg.bsky.social. Co-organized with @lammerdinglab.bsky.social, @katemiro.bsky.social and Verena Ruprecht, the amazing program is here:
events.faseb.org/event/Mechan...
Opportunities for talks! Abstracts by Aug. 31st.
Reposted by Philipp Niethammer
lammerdinglab.bsky.social
Interested in nuclear #mechanobiology? Join us for the first ever FASEB Science Research Conference on the Mechanobiology of the Nucleus #MBNSRC.
Find more information and register at: events.faseb.org/event/Mechan...
Submit abstracts by August 31, 2025. Please share and see you in October!
niethammerlab.bsky.social
Interesting preprint about nuclear membrane mechanotransduction in neutrophils!
www.biorxiv.org/content/10.1...
cPLA2α Targeting to Exosomes Connects Nuclear Deformation to LTB4-Signaling During Neutrophil Chemotaxis
Efficient neutrophil chemotaxis requires the integration of mechanical forces and lipid-mediated signaling. While the signaling lipid leukotriene B4 (LTB4) reinforces cellular polarity, how mechanical cues regulate its production remains unclear. We now show that cytosolic phospholipase A2α (cPLA₂α), which is essential for the synthesis of LTB4, functions as a nuclear curvosensor. cPLA₂α responds to nuclear constrictions by localizing to ceramide-rich inner nuclear membrane microdomains and incorporating onto the exofacial surface of nuclear envelope-derived exosomes. This unique topology enables localized LTB4 synthesis, which promotes myosin light chain II phosphorylation, and sustains polarity and directional persistence after constriction. In neutrophils squeezing through small constrictions, loss of cPLA₂α impairs nuclear curvature sensing, exosomal LTB4 production, and post-constriction motility. These findings uncover a cPLA2-dependent mechano-chemical axis linking nuclear architecture to chemotactic efficiency and offering new strategies to modulate inflammatory responses. ### Competing Interest Statement The authors have declared no competing interest. National Institutes of Health, https://ror.org/01cwqze88, EB030474, R01AI152517, GM145470 American Heart Association, https://ror.org/013kjyp64, 014194, 025905, 916874
www.biorxiv.org
Reposted by Philipp Niethammer
theonion.com
Researchers Train Mice To Choose Between Life-Saving Medications And Other Essentials theonion.com/researc...
Researchers Train Mice To Choose Between Life-Saving Medications And Other Essentials
niethammerlab.bsky.social
The question is whether our combined mechanistic concepts derived from chemistry, physics, and mathematics offer, or can offer a true understanding of the equifinal restitution phenomenon?
niethammerlab.bsky.social
“…nothing can show better than the fact of the equifinality of restitutions how absolutely inadequate all our scientific conceptions are when confronted with the actual phenomena of life itself.” Equifinal restitution = regeneration of the same form via different means observed in various organisms.
niethammerlab.bsky.social
More than a century ago: Driesch’s mechanobiological interrogation of epigenesis. Biology today: still living of the conceptual substance those people provided, using fancier tools, adding finer and finer molecular detail, not usually more overall insight or imagination…life remains a mystery.
niethammerlab.bsky.social
Parades of peaceful people - so much better than parades of tanks ❤️NYC!