Qiwei Yu
@qiweiyu.bsky.social
90 followers 190 following 13 posts
PhD candidate & Harold W. Dodds Fellow @Princeton | statistical mechanics & theoretical biophysics | previously @IBMResearch @Peking University @Rice University https://qiweiyuu.github.io/
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qiweiyu.bsky.social
Living systems operate nonequilibrium processes across many scales in space and time. Is there a model-free way to bridge the descriptions at different levels of coarse-graining? Here we find that preserving the evidence of time-reversal symmetry breaking works remarkably well!
chriswlynn.bsky.social
Biology consumes energy at the microscale to power functions across all scales: From proteins and cells to entire populations of animals.

Led by @qiweiyu.bsky.social‬ and @mleighton.bsky.social‬, we study how coarse-graining can help to bridge this gap 👇🧵

arxiv.org/abs/2506.01909
qiweiyu.bsky.social
This session is co-organized with @davidhathcock.bsky.social. The session will also feature invited talks from Victor Sourjik (Max Planck Institute) and Pieter Rein ten Wolde (AMOLF). Look forward to seeing you there!
qiweiyu.bsky.social
For the 2026 APS March Meeting, please consider submitting your abstract to our new focus session on Cellular Sensing and Signaling (04.01.29), which aims to bridge theory and experiments to understand how cells sense and respond to environmental signals.
Reposted by Qiwei Yu
aps-dsnp.bsky.social
📸 Image of the month: August!

This month we are excited to feature “𝐏𝐚𝐭𝐭𝐞𝐫𝐧 𝐟𝐨𝐫𝐦𝐚𝐭𝐢𝐨𝐧 𝐨𝐟 𝐥𝐢𝐩𝐢𝐝 𝐝𝐨𝐦𝐚𝐢𝐧𝐬 𝐢𝐧 𝐛𝐢𝐥𝐚𝐲𝐞𝐫 𝐦𝐞𝐦𝐛𝐫𝐚𝐧𝐞𝐬” by Yu et al.

Learn more about their exciting research here: qiweiyuu.github.io

🔗 (paper): doi.org/10.1039/D5SM...
(1/4)
qiweiyu.bsky.social
Congrats Mattia!!
Reposted by Qiwei Yu
Reposted by Qiwei Yu
qiweiyu.bsky.social
The paper provides comprehensive evidence in support of this mechanism, but here is one of my favs: as a consequence, ectopic polysome accumulations, caused by redirecting gene expression away from the chromosome and toward plasmids, are sufficient to drive aberrant nucleoid dynamics
qiweiyu.bsky.social
Not only does our model capture the dynamics of polysome and nucleoid during segregation (kymograph below), but it also explains a linear relation between segregation time and growth rate, with a single (!) fitting parameter (figure below).
qiweiyu.bsky.social
With a minimal theoretical model, we show that the segregation dynamics can be explained by considering two ingredients: steric repulsion between polysome and nucleoid, and nonequilibrium production and degradation dynamics of polysomes.
qiweiyu.bsky.social
Our recent work (elifesciences.org/articles/104...) combines theory and experiments (by Alex Papagiannakis and Christine Jacobs-Wagner) to understand how chromosome segregation is coupled to growth in E coli. We demonstrate that the nonequilibrium dynamics of polysomes may play a key role.
qiweiyu.bsky.social
Living systems operate nonequilibrium processes across many scales in space and time. Is there a model-free way to bridge the descriptions at different levels of coarse-graining? Here we find that preserving the evidence of time-reversal symmetry breaking works remarkably well!
chriswlynn.bsky.social
Biology consumes energy at the microscale to power functions across all scales: From proteins and cells to entire populations of animals.

Led by @qiweiyu.bsky.social‬ and @mleighton.bsky.social‬, we study how coarse-graining can help to bridge this gap 👇🧵

arxiv.org/abs/2506.01909
Reposted by Qiwei Yu
chriswlynn.bsky.social
Biology consumes energy at the microscale to power functions across all scales: From proteins and cells to entire populations of animals.

Led by @qiweiyu.bsky.social‬ and @mleighton.bsky.social‬, we study how coarse-graining can help to bridge this gap 👇🧵

arxiv.org/abs/2506.01909
Reposted by Qiwei Yu
davidasivak.bsky.social
Postdoc opportunity!
Join us in heavenly Vancouver (Canada) to develop fundamental nonequilibrium stat mech, thermo, and info theory applied to biomolecular machines and in close collaboration with experiment.
Details: www.sfu.ca/physics/siva...
Postdoc Ad
www.sfu.ca
qiweiyu.bsky.social
In this paper, we studied how patterns emerge from a combination of the phase separation of lipids and the elastic deformation of the membrane. In a ternary membrane system, we determined how pattern size and morphology depend on lipid composition, surface tension, etc, in agreement with experiments
qiweiyu.bsky.social
Our work on lipid domain pattern formation is now published in Soft Matter as part of the themed collection "Pioneering Investigators": pubs.rsc.org/en/content/a...

Grateful for my advisor Andrej Košmrlj for his mentorship, and for our collaborators for teaching us a lot about membranes!
qiweiyu.bsky.social
Excited to be at @apsphysics.bsky.social March meeting this week. Check out the following talks from my collaborators and me!