Sagrika Chugh
@sagrikachugh.bsky.social
Bioinformatics post doc 💻 @UniMelb & @svimedicalresearch
| Data Science | Bioinformatics | she/her https://sagrikachugh.github.io/
| Data Science | Bioinformatics | she/her https://sagrikachugh.github.io/
Reposted by Sagrika Chugh
Chelsea Mayoh gave one of the most inspiring talks of the conference. Performing RNA-seq on kids with cancer in Australia has been highly successful in generating reportable findings, treatment recommendations, correcting diagnoses and mostly importantly, improving survival. #abacbs2025
November 26, 2025 at 4:48 AM
Chelsea Mayoh gave one of the most inspiring talks of the conference. Performing RNA-seq on kids with cancer in Australia has been highly successful in generating reportable findings, treatment recommendations, correcting diagnoses and mostly importantly, improving survival. #abacbs2025
Reposted by Sagrika Chugh
Congratulations Hiruna Samarakoon (yet to be on bluesky) for winning the #abacbs2025 “Torsten Seemann” Outstanding Bioinformatics Software Developer Award!!! 🎉🎉🎉
November 26, 2025 at 5:01 AM
Congratulations Hiruna Samarakoon (yet to be on bluesky) for winning the #abacbs2025 “Torsten Seemann” Outstanding Bioinformatics Software Developer Award!!! 🎉🎉🎉
Melbourne Integrative Genomics, UniMelb @mig-unimelb.bsky.social at #ABACBS2025
Amazing to have a big representation at @abacbs.bsky.social held in Adelaide.
Amazing to have a big representation at @abacbs.bsky.social held in Adelaide.
November 26, 2025 at 5:24 AM
Melbourne Integrative Genomics, UniMelb @mig-unimelb.bsky.social at #ABACBS2025
Amazing to have a big representation at @abacbs.bsky.social held in Adelaide.
Amazing to have a big representation at @abacbs.bsky.social held in Adelaide.
Kevin Chen from the University of Western Australia shared how we can use LLMs to analyse public RNA seq datasets using UORCA www.biorxiv.org/content/10.1...
#ABACBS2025 @abacbs.bsky.social
#ABACBS2025 @abacbs.bsky.social
Uncovering biological patterns across studies through automated large-scale reanalyses of public transcriptomic data
Large amounts of transcriptomic data have been made available in public repositories. Systematic reanalyses of these data offer the potential to identifying conserved biological patterns or context-sp...
www.biorxiv.org
November 26, 2025 at 4:39 AM
Kevin Chen from the University of Western Australia shared how we can use LLMs to analyse public RNA seq datasets using UORCA www.biorxiv.org/content/10.1...
#ABACBS2025 @abacbs.bsky.social
#ABACBS2025 @abacbs.bsky.social
Reposted by Sagrika Chugh
Our cornetto work is now published at www.nature.com/articles/s41...
It can do near-T2T assembly using @nanoporetech.com adaptive sampling
- with less 💸
- reference agnostic, so works for non-humans
- not just blood, even saliva
Just presented at #abacbs2025 yesterday.
It can do near-T2T assembly using @nanoporetech.com adaptive sampling
- with less 💸
- reference agnostic, so works for non-humans
- not just blood, even saliva
Just presented at #abacbs2025 yesterday.
Targeted sequencing and iterative assembly of near-complete genomes - Nature Communications
Long-read sequencing enables high-quality genome assemblies, but challenges remain. Here, the authors introduce Cornetto, a method that improves assembly quality, enables genome sequencing from saliva...
www.nature.com
November 26, 2025 at 4:12 AM
Our cornetto work is now published at www.nature.com/articles/s41...
It can do near-T2T assembly using @nanoporetech.com adaptive sampling
- with less 💸
- reference agnostic, so works for non-humans
- not just blood, even saliva
Just presented at #abacbs2025 yesterday.
It can do near-T2T assembly using @nanoporetech.com adaptive sampling
- with less 💸
- reference agnostic, so works for non-humans
- not just blood, even saliva
Just presented at #abacbs2025 yesterday.
Reposted by Sagrika Chugh
Such a cool and interesting talk by Dr Sally Lau @lausally.bsky.social on Octopus DNA and the collapse of Ice sheets in Antarctic!
#Confbingo update - presentation on dangerous animals ✅✅ #ABACBS2025
#Confbingo update - presentation on dangerous animals ✅✅ #ABACBS2025
November 26, 2025 at 4:04 AM
Such a cool and interesting talk by Dr Sally Lau @lausally.bsky.social on Octopus DNA and the collapse of Ice sheets in Antarctic!
#Confbingo update - presentation on dangerous animals ✅✅ #ABACBS2025
#Confbingo update - presentation on dangerous animals ✅✅ #ABACBS2025
Reposted by Sagrika Chugh
Our prez @jessmar.bsky.social gave a shout-out to our Slack shameless-plugs channel. We’re all about boosting our members, which is why we’re leaning into Bluesky. Papers shared here get indexed by Altmetric, so growing this community turns into real, measurable impact for our members #ABACBS2025
November 26, 2025 at 3:56 AM
Our prez @jessmar.bsky.social gave a shout-out to our Slack shameless-plugs channel. We’re all about boosting our members, which is why we’re leaning into Bluesky. Papers shared here get indexed by Altmetric, so growing this community turns into real, measurable impact for our members #ABACBS2025
Reposted by Sagrika Chugh
Thanks so much to the 113 people who have answered the survey! If you haven’t already you can find it at lnkd.in/gJGfxftq or come see me at our poster! @abacbs.bsky.social #ABACBS2025
November 26, 2025 at 4:00 AM
Thanks so much to the 113 people who have answered the survey! If you haven’t already you can find it at lnkd.in/gJGfxftq or come see me at our poster! @abacbs.bsky.social #ABACBS2025
Reposted by Sagrika Chugh
Chelsea Mayoh at #abacbs2025: "If you're not using RNA-seq in your precision medicine program you're probably missing stuff"! Great to see @aliciao.bsky.social lab tools MINTIE, ALLsorts and TALLsorts making an appearance 🎉
November 26, 2025 at 3:43 AM
Chelsea Mayoh at #abacbs2025: "If you're not using RNA-seq in your precision medicine program you're probably missing stuff"! Great to see @aliciao.bsky.social lab tools MINTIE, ALLsorts and TALLsorts making an appearance 🎉
Reposted by Sagrika Chugh
iplotx by Fabio Zanini supports visualising any network or tree analysis library. Can’t wait to visualise assembly graphs with iplotx! 🤩💻 #ABACBS2025 @abacbs.bsky.social
November 26, 2025 at 1:09 AM
iplotx by Fabio Zanini supports visualising any network or tree analysis library. Can’t wait to visualise assembly graphs with iplotx! 🤩💻 #ABACBS2025 @abacbs.bsky.social
Reposted by Sagrika Chugh
Fabio’s talk on iplotx in #ABACBS2025 is one of my favorite! I mean who doesn’t need a network plot with style?? github.com/fabilab/iplotx
GitHub - fabilab/iplotx: Visualise networks and trees in Python, with style.
Visualise networks and trees in Python, with style. - fabilab/iplotx
github.com
November 26, 2025 at 1:10 AM
Fabio’s talk on iplotx in #ABACBS2025 is one of my favorite! I mean who doesn’t need a network plot with style?? github.com/fabilab/iplotx
Reposted by Sagrika Chugh
Great work by Hengxin Pan presenting at #abacbs2025 from @nadia-davidson.bsky.social lab @wehi-research.bsky.social CONCERTDR: an R package with a comprehensive suite of tools for drug response data analysis
github.com/DavidsonGrou...
github.com/DavidsonGrou...
GitHub - DavidsonGroup/CONCERT_DR: CONCERT_drug repurposing
CONCERT_drug repurposing. Contribute to DavidsonGroup/CONCERT_DR development by creating an account on GitHub.
github.com
November 26, 2025 at 1:24 AM
Great work by Hengxin Pan presenting at #abacbs2025 from @nadia-davidson.bsky.social lab @wehi-research.bsky.social CONCERTDR: an R package with a comprehensive suite of tools for drug response data analysis
github.com/DavidsonGrou...
github.com/DavidsonGrou...
Reposted by Sagrika Chugh
It was great to present TRECA at ABACBS 2025 as a lightening talk.
Come find my poster #21.
#ABACBS2025 @abacbs.bsky.social
Come find my poster #21.
#ABACBS2025 @abacbs.bsky.social
November 26, 2025 at 1:26 AM
It was great to present TRECA at ABACBS 2025 as a lightening talk.
Come find my poster #21.
#ABACBS2025 @abacbs.bsky.social
Come find my poster #21.
#ABACBS2025 @abacbs.bsky.social
Reposted by Sagrika Chugh
Learn how to ATAClone on Friday 29 Nov 9.00 am @ Room 506, Festival Tower
github.com/TrigosTeam/A...
#ABACBS2025 @lachlancain.bsky.social @abacbs.bsky.social @annatrigos.bsky.social
github.com/TrigosTeam/A...
#ABACBS2025 @lachlancain.bsky.social @abacbs.bsky.social @annatrigos.bsky.social
November 26, 2025 at 1:27 AM
Learn how to ATAClone on Friday 29 Nov 9.00 am @ Room 506, Festival Tower
github.com/TrigosTeam/A...
#ABACBS2025 @lachlancain.bsky.social @abacbs.bsky.social @annatrigos.bsky.social
github.com/TrigosTeam/A...
#ABACBS2025 @lachlancain.bsky.social @abacbs.bsky.social @annatrigos.bsky.social
Reposted by Sagrika Chugh
Tom Litfin on LMIBoltz -optimising VRAM in the AF3-like model Boltz2 in modelling huge complexes - saving us from getting a bigger GPU! #ABACBS2025
November 26, 2025 at 1:30 AM
Tom Litfin on LMIBoltz -optimising VRAM in the AF3-like model Boltz2 in modelling huge complexes - saving us from getting a bigger GPU! #ABACBS2025
Reposted by Sagrika Chugh
With Slorado, now you have more choices for GPUs when basecalling @nanoporetech.com sequencing data. This is a work we collaborated on with AMD, led by
PhD candidate @bonson-wong.bsky.social (poster at #abacbs2025) and great to see being highlighted in the AMD blog: www.amd.com/en/blogs/202...
PhD candidate @bonson-wong.bsky.social (poster at #abacbs2025) and great to see being highlighted in the AMD blog: www.amd.com/en/blogs/202...
www.amd.com
November 26, 2025 at 1:43 AM
With Slorado, now you have more choices for GPUs when basecalling @nanoporetech.com sequencing data. This is a work we collaborated on with AMD, led by
PhD candidate @bonson-wong.bsky.social (poster at #abacbs2025) and great to see being highlighted in the AMD blog: www.amd.com/en/blogs/202...
PhD candidate @bonson-wong.bsky.social (poster at #abacbs2025) and great to see being highlighted in the AMD blog: www.amd.com/en/blogs/202...
Conrad Leonard from Australian BioCommons on building national infrastructure for human genomics data sharing with GUARDIAN - human Genomics Uplift for Australia through Research Data Infrastructure At National Scale.
@abacbs.bsky.social #ABACBS2025 @ausbiocommons.bsky.social
@abacbs.bsky.social #ABACBS2025 @ausbiocommons.bsky.social
November 26, 2025 at 2:05 AM
Conrad Leonard from Australian BioCommons on building national infrastructure for human genomics data sharing with GUARDIAN - human Genomics Uplift for Australia through Research Data Infrastructure At National Scale.
@abacbs.bsky.social #ABACBS2025 @ausbiocommons.bsky.social
@abacbs.bsky.social #ABACBS2025 @ausbiocommons.bsky.social
Jianan Wang from Peter Mac introducing us to a new demultiplexing method CMDdemux.
#ABACBS2025 @abacbs.bsky.social
#ABACBS2025 @abacbs.bsky.social
November 26, 2025 at 1:48 AM
Jianan Wang from Peter Mac introducing us to a new demultiplexing method CMDdemux.
#ABACBS2025 @abacbs.bsky.social
#ABACBS2025 @abacbs.bsky.social
@hsiaochi.bsky.social talking us through how to remove unwanted variation from single cell multi-omics data with EXTruvIIInb #ABACBS2025 @abacbs.bsky.social
November 26, 2025 at 1:37 AM
@hsiaochi.bsky.social talking us through how to remove unwanted variation from single cell multi-omics data with EXTruvIIInb #ABACBS2025 @abacbs.bsky.social
Learning about molecular clocks with Clockor2 by Leo Featherstone from Peter Doherty.
They also have a workshop on Thursday. #ABACBS2025 @abacbs.bsky.social
They also have a workshop on Thursday. #ABACBS2025 @abacbs.bsky.social
November 26, 2025 at 1:25 AM
Learning about molecular clocks with Clockor2 by Leo Featherstone from Peter Doherty.
They also have a workshop on Thursday. #ABACBS2025 @abacbs.bsky.social
They also have a workshop on Thursday. #ABACBS2025 @abacbs.bsky.social
Visualising networks with iplotx with Fabio Zanini.
It eats anything from any tool #ABACBS2025 @abacbs.bsky.social
It eats anything from any tool #ABACBS2025 @abacbs.bsky.social
November 26, 2025 at 1:01 AM
Visualising networks with iplotx with Fabio Zanini.
It eats anything from any tool #ABACBS2025 @abacbs.bsky.social
It eats anything from any tool #ABACBS2025 @abacbs.bsky.social
Don't forget to vote for your favourite poster for the people's choice awards. QR code is around the poster area #ABACBS2025 @abacbs.bsky.social
Posters are getting up for Day 2 of #ABACBS2025
Visit the posters during morning and afternoon tea for some great science and food for thought. @abacbs.bsky.social
Visit the posters during morning and afternoon tea for some great science and food for thought. @abacbs.bsky.social
November 26, 2025 at 12:53 AM
Don't forget to vote for your favourite poster for the people's choice awards. QR code is around the poster area #ABACBS2025 @abacbs.bsky.social
Reposted by Sagrika Chugh
It's not just because @torstenseemann.bsky.social is a bioinformatics legend but this may be my favourite #abacbs2025 poster because I'm a #trek tragic 🖖
November 26, 2025 at 12:34 AM
It's not just because @torstenseemann.bsky.social is a bioinformatics legend but this may be my favourite #abacbs2025 poster because I'm a #trek tragic 🖖
Reposted by Sagrika Chugh
Perfecting bacterial genome assembly with Autocycler - from the one and only Ryan Wick #ABACBS2025
November 26, 2025 at 12:36 AM
Perfecting bacterial genome assembly with Autocycler - from the one and only Ryan Wick #ABACBS2025