sashakorenskaia.bsky.social
Aleksandra Korenskaia
@sashakorenskaia.bsky.social
15 followers 78 following 3 posts
PhD student exploring the world of tailoring #ensymes and #phylogeny at the @ZiemertLab in the @MAGicMOLFUN consortium with passion to #genomics of #microbes
Posts Media Videos Starter Packs
sashakorenskaia.bsky.social
Aleksandra Korenskaia @sashakorenskaia.bsky.social · 11d
Great news! 🎉 MITE is an amazing resource, and I’m happy I could contribute with annotations. Huge congratulations to Mitja Zdouc and colleagues for developing such a thoughtful database—and to Mitja especially for coordinating the effort, bringing so many contributors together 👏
mmzdouc.bsky.social
Mitja M. Zdouc @mmzdouc.bsky.social · 12d
Aaand it's out! Meet MITE - the natural product tailoring enzyme database, just published in @narjournal.bsky.social! MITE DB captures the substrate- and reaction-specificity of tailoring enzymes, allowing to capture this information in a human- and machine-readable way! doi.org/10.1093/nar/...
1
sashakorenskaia.bsky.social
Aleksandra Korenskaia @sashakorenskaia.bsky.social · 11d
Thank you for your kind words! MITE database is extremely valuable for the PhyloNaP, and I am looking forward to the new enzymes coming after the annotathon!
1
sashakorenskaia.bsky.social
Aleksandra Korenskaia @sashakorenskaia.bsky.social · 11d
Working with natural products? With PhyloNaP you can place proteins from BGCs into annotated phylogenetic trees—making functional inference easier! #phylogeny #bioinformatics #naturalproducts #magicmolfun #ziemertlab
nadineziemert.bsky.social
Nadine Ziemert @nadineziemert.bsky.social · 12d
Happy to share our newest preprint. PhyloNaP as a user friendly database of phylogeny for enzymes involved in natural product production and as public repository for well curated phylogenetic trees. Happy Tree Building!!!
#phylogeny #secmet #bioinformatics

www.biorxiv.org/content/10.1...
PhyloNaP: a user-friendly database of Phylogeny for Natural Product-producing enzymes
Phylogenetic analysis is widely used to predict enzyme function, yet building annotated and reusable trees is labor-intensive and requires extensive knowledge about the specific enzymes. Existing reso...
www.biorxiv.org
1 5