Nadine Ziemert
@nadineziemert.bsky.social
1.2K followers 810 following 54 posts
Microbiology and bioinformatics professor in Tuebingen, Malinois lover, fan of secondary metabolites in bacteria, evolution, computational biology, yoga, search and rescue, and Pepper
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Reposted by Nadine Ziemert
mmzdouc.bsky.social
Great to see PhyloNaP out! Great tool, and it also connects to mite.bioinformatic.nl! #openscience #collaboration
Reposted by Nadine Ziemert
sashakorenskaia.bsky.social
Working with natural products? With PhyloNaP you can place proteins from BGCs into annotated phylogenetic trees—making functional inference easier! #phylogeny #bioinformatics #naturalproducts #magicmolfun #ziemertlab
nadineziemert.bsky.social
Happy to share our newest preprint. PhyloNaP as a user friendly database of phylogeny for enzymes involved in natural product production and as public repository for well curated phylogenetic trees. Happy Tree Building!!!
#phylogeny #secmet #bioinformatics

www.biorxiv.org/content/10.1...
PhyloNaP: a user-friendly database of Phylogeny for Natural Product-producing enzymes
Phylogenetic analysis is widely used to predict enzyme function, yet building annotated and reusable trees is labor-intensive and requires extensive knowledge about the specific enzymes. Existing reso...
www.biorxiv.org
Reposted by Nadine Ziemert
phypapers.bsky.social
PhyloNaP: a user-friendly database of Phylogeny for Natural Product-producing enzymes https://www.biorxiv.org/content/10.1101/2025.09.23.677986v1
Reposted by Nadine Ziemert
natprodreports.rsc.org
Be sure to read this review, part of our Industrial Perspective themed collection, by Stefano Donadio & co. from NAICONS Srl discussing the trends in metabolite discovery from Actinomycetes #secmet #natprod

Find it in full below👇
Trends in metabolite discovery from Actinomycetes
Covering: 2013 to 2023 In this review, we analyzed the scientific literature of the period 2013–2023 that reported novel specialized metabolites from the Actinomycetes, one of the most prolific…
pubs.rsc.org
nadineziemert.bsky.social
Happy to share our newest preprint. PhyloNaP as a user friendly database of phylogeny for enzymes involved in natural product production and as public repository for well curated phylogenetic trees. Happy Tree Building!!!
#phylogeny #secmet #bioinformatics

www.biorxiv.org/content/10.1...
PhyloNaP: a user-friendly database of Phylogeny for Natural Product-producing enzymes
Phylogenetic analysis is widely used to predict enzyme function, yet building annotated and reusable trees is labor-intensive and requires extensive knowledge about the specific enzymes. Existing reso...
www.biorxiv.org
Reposted by Nadine Ziemert
mmzdouc.bsky.social
Aaand it's out! Meet MITE - the natural product tailoring enzyme database, just published in @narjournal.bsky.social! MITE DB captures the substrate- and reaction-specificity of tailoring enzymes, allowing to capture this information in a human- and machine-readable way! doi.org/10.1093/nar/...
nadineziemert.bsky.social
Conferencing with my favorite natural product chemist this week at the #ASP2025 in Grands Rapids, Michigan. Great science, inspiring talks, and reconnecting with friends and colleagues! @claesengroup.bsky.social @eustaquiolab.bsky.social @balunaslab.bsky.social #SecMet #NaturalProducts
Reposted by Nadine Ziemert
natprodreports.rsc.org
We are delighted to be sponsoring the 32nd International Symposium on the Chemistry of Natural Products! #ISCNP32 #ICOB12 #IUPAC #RACI #natprod

🚨Registration closes in two weeks! Don't miss your final chance to attend▶https://bit.ly/4mfyZHd

Find more info here👉https://www.iscnp32-icob12.org/about
Reposted by Nadine Ziemert
bossdorf.bsky.social
Nice new building on our campus @unituebingen.bsky.social but the designer monoculture lawn in the front is clearly not climate change-resistant. New strategy please!
Reposted by Nadine Ziemert
cmfi.bsky.social
🚨 Naming Challenge:
Help redefine the #glycopeptide family!

🏆Submit your idea & win 500 € + authorship credit

Let’s rethink antibiotic classification—together!

🧬 Deadline: Sept 15, 2025

👉 docs.google.com/forms/d/e/1F...

@nadineziemert.bsky.social #NameChallenge #NaturalProducts #Antibiotics
nadineziemert.bsky.social
The last day at #ISBA2025 Hanna Augustijn from @marnixmedema.bsky.social and @gillesvanwezel.bsky.social labs giving a brilliant talk about her PhD project mapping the transcription factors and regulation networks in Actinomycetes. Very cool work! #naturalproducts #secmet #bacterialregulation
nadineziemert.bsky.social
New Session at #ISBA2025 Paul Jensen and @matthutchings.bsky.social talking about the fascinating interactions of actinomycetes with predators and plants… #secmet #bacterialinteractions #naturalproducts
nadineziemert.bsky.social
@kateduncan.bsky.social Talking about the diversity and biosynthesis potential in the rare actinomycete genus Rhodococcus at #ISBA2025
nadineziemert.bsky.social
Thankful that I had the opportunity to chair the #Genomics and #NaturalProductsBiosynthesis Session at #ISBA2025
Thanks to the awesome speakers and their inspiring talks! Lei Dong, Jaclyn Winter, @kblin.bsky.social, Lisa Vader, Eric Helfrich!
Reposted by Nadine Ziemert
kateduncan.bsky.social
Lisa highlights the upcoming “Natural Products in the 21st Century” conference, hosted by the MAGic-MOLFUN @magicmolfun.bsky.social doctoral network!
📅 February 9–11, 2026
📍 Leuven, Belgium (Provinciehuis Conference Center) - more info soon! #ISBA2025
Reposted by Nadine Ziemert
kateduncan.bsky.social
At #ISBA2025, Jaclyn Winter (University of Utah) on ‘bioprospecting hypersaline microorganisms from Great Salt Lake for Natural Product Discovery and Environmental Adaption’ in the genomics & natural products biosynthesis session chaired by @nadineziemert.bsky.social & @marnixmedema.bsky.social