Utz Ermel
@uermel.bsky.social
Scientist at bi[o]hub, Redwood City, CA
I like to make open source cryoET things.
I like to make open source cryoET things.
A paper on this is to follow, a variation was described here: www.nature.com/articles/s41...
An abridged version of the method can also be found directly on the cryoET portal. Click "View All Info" on the page of one of the datasets contained in this deposition.
An abridged version of the method can also be found directly on the cryoET portal. Click "View All Info" on the page of one of the datasets contained in this deposition.
January 28, 2026 at 3:53 PM
A paper on this is to follow, a variation was described here: www.nature.com/articles/s41...
An abridged version of the method can also be found directly on the cryoET portal. Click "View All Info" on the page of one of the datasets contained in this deposition.
An abridged version of the method can also be found directly on the cryoET portal. Click "View All Info" on the page of one of the datasets contained in this deposition.
Works with local OME-Zarr files, or as a bonus: stream sub-tilt stacks directly from the cryoET Data Portal: cryoetdataportal.czscience.com
Massive thanks to @danielji.bsky.social who did the heavy lifting implementing this over the summer! 🙌
Massive thanks to @danielji.bsky.social who did the heavy lifting implementing this over the summer! 🙌
CryoET Data Portal
cryoetdataportal.czscience.com
November 17, 2025 at 10:30 PM
Works with local OME-Zarr files, or as a bonus: stream sub-tilt stacks directly from the cryoET Data Portal: cryoetdataportal.czscience.com
Massive thanks to @danielji.bsky.social who did the heavy lifting implementing this over the summer! 🙌
Massive thanks to @danielji.bsky.social who did the heavy lifting implementing this over the summer! 🙌
The kaggle competition may be over, but we remain excited to see solutions from #TeamTomo!
If you're interested in checking whether your algorithm beats the kaggle winners' please don’t hesitate to give it a go and make a submission to the data portal!
If you're interested in checking whether your algorithm beats the kaggle winners' please don’t hesitate to give it a go and make a submission to the data portal!
March 6, 2025 at 5:14 PM
The kaggle competition may be over, but we remain excited to see solutions from #TeamTomo!
If you're interested in checking whether your algorithm beats the kaggle winners' please don’t hesitate to give it a go and make a submission to the data portal!
If you're interested in checking whether your algorithm beats the kaggle winners' please don’t hesitate to give it a go and make a submission to the data portal!
Now that the competition is closed, we're releasing all 492 runs, including raw data, tomograms and ground truth annotations as a benchmark dataset for the community. Find the datasets here: cryoetdataportal.czscience.com/depositions/...
March 6, 2025 at 5:14 PM
Now that the competition is closed, we're releasing all 492 runs, including raw data, tomograms and ground truth annotations as a benchmark dataset for the community. Find the datasets here: cryoetdataportal.czscience.com/depositions/...
Exciting news! Are you planning to eventually release these beautiful segmentations as well?
February 28, 2025 at 9:26 PM
Exciting news! Are you planning to eventually release these beautiful segmentations as well?