Anouk Willemsen
@willemsenanouk.bsky.social
2.1K followers 190 following 53 posts
Scientist working on genome evolution, viruses, computational molecular evolution, and experimental evolution. 👩🏼‍🔬 🇪🇺🇳🇱🇪🇸🇫🇷🇦🇹 https://veelab.univie.ac.at/
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willemsenanouk.bsky.social
New work out!

Spearheaded by Lotte, we have developed a single-molecule messenger RNA fluorescence in situ hybridisation (smFISH) protocol for #giantViruses in an #Acanthamoeba host.

doi.org/10.1101/2025...

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#ProtistsOnSky #MicroSky @dome-vienna.bsky.social @cemess.bsky.social @erc.europa.eu
willemsenanouk.bsky.social
Reposting for #VirEvol
duckswabber.bsky.social
Antigenic map of H5 influenza viruses spanning their evolutionary history. 3 clusters (surprisingly few!) w no cross immunity. 6 key aa identified. 2344b, 2321a, 2344h in different clusters. Big jump in antigenicity from 234 to 2344b important finding.
👉 www.researchsquare.com/article/rs-6...
willemsenanouk.bsky.social
Proud moment to see the first Master student of the team (Lotte Mayer) successfully defend her Master's thesis work digging into viral factories of #giantViruses.

A link to part of her work:
doi.org/10.1101/2025...

@erc.europa.eu @univie.ac.at @cemess.bsky.social @dome-vienna.bsky.social
willemsenanouk.bsky.social
Last week #ESEB2025 wrapped up. It was a great opportunity to chat with colleagues, hear about great evolutionary research, present the group's work, and be a proud PI of Laura, who did a great job presenting her PhD work! Two years to go until next ESEB!

@eseb2025.bsky.social
Reposted by Anouk Willemsen
willemsenanouk.bsky.social
Thanks for the comment! Originally we did write BONCAT in our manuscript. With your comment as support we might still be able to change it back in the final version.
willemsenanouk.bsky.social
When transported outside of the viral factory, the translation of viral mRNA takes place in a well-defined ring surrounding it. We expect these methods to be widely applicable to other viruses for the visualisation and quantification of RNA molecules.

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willemsenanouk.bsky.social
While viral mRNA localisation changes depending on the infection stage, transcription occurs at well-defined spots within the viral factory. The original viral cores released within the cytoplasm most likely define these spots.

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willemsenanouk.bsky.social
Combined with other labelling techniques, we show the #Mimivirus transcription and translation sites during an infection cycle in the amoeba host cell.

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willemsenanouk.bsky.social
New work out!

Spearheaded by Lotte, we have developed a single-molecule messenger RNA fluorescence in situ hybridisation (smFISH) protocol for #giantViruses in an #Acanthamoeba host.

doi.org/10.1101/2025...

1/4

#ProtistsOnSky #MicroSky @dome-vienna.bsky.social @cemess.bsky.social @erc.europa.eu
Reposted by Anouk Willemsen
nucleosomepolice.bsky.social
by now you probably know that #giantviruses have #histones, but some also have histone variants! Check out our latest preprint on an essential H2B-H2A histone variant in Melbournevirus - a fantastic collaboration with the Abergel Lab, spearheaded by Ale Villalta. www.biorxiv.org/content/10.1...
Reposted by Anouk Willemsen
jcamthrash.bsky.social
Pacmanvirus isolated from the Lost City hydrothermal field extends the concept of transpoviron beyond the family Mimiviridae academic.oup.com/ismej/advanc... #jcampubs
Reposted by Anouk Willemsen
fischerlab.bsky.social
Looking for a postdoc in environmental virology? Fascinated by giant viruses and their glycobiology?
We have a position available at the MPI for Marine Microbiology!
@mpimarinemicrobio.bsky.social @maxplanck.de
career.mpi-bremen.de/jobposting/8...
Post-Doc Protist Viruses
career.mpi-bremen.de
willemsenanouk.bsky.social
Don't forget the #giantVirus tag! With it, it will get collected in the Giant virus feed
willemsenanouk.bsky.social
Reposting for #VirEvol and #giantViruses
jesseerasmus.bsky.social
Couldn’t find a virology starter pack so here’s one to get the ball rolling. Repost/reply if you are a virologist so I can find and add you to the list!

go.bsky.app/SinqoJU
Reposted by Anouk Willemsen
nucleosomepolice.bsky.social
behold our paper on Medusavirus nucleosomes. Fantastic work by Chelsea Toner, @nhoitsma.bsky.social, and Sashi Weerawarana This giant virus also encodes a linker histone, more about that in the paper 🧪👩‍🔬 🧵.
www.nature.com/articles/s41...
willemsenanouk.bsky.social
Finally, by analyzing the new amoebal genomes, we discovered viral integrations (potentially from GVs) into some of them, indicating historical infections. Most notably some inserted major capsid proteins seem to potentially encode for intact proteins (work in progress)...

Read and enjoy!

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willemsenanouk.bsky.social
They encode few to complete tRNA sets and even genes from the translational machinery (e.g. tRNA--ligases). The host immune system may also play a role, driving viral codon usage away from its own. Moreover, its replication site (nuclear vs. cytoplasmatic) could also play a role.

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willemsenanouk.bsky.social
We sequenced high-quality genomes of protists known as hosts of giant viruses (GVs).

Matching of codon usage preferences is often used to predict virus-host pairs. Our analyses revealed that in GVs, codon usage alone is a poor predictor of known pairs.

Why? well, GVs have complex genomes...

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willemsenanouk.bsky.social
We sequenced some new #genomes!

Novel high-quality #amoeba genomes reveal widespread #codonUsage mismatch between #giantViruses and their hosts.

doi.org/10.1101/2024...

#ProtistsOnSky #MicroSky 🖥️🧬

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