Zebrafish Information Network (ZFIN)
@zfinmod.bsky.social
430 followers 47 following 38 posts
The Zebrafish Information Network (ZFIN) is the database of genetic and genomic data for the zebrafish as a model organism. ZFIN provides a wide array of expertly curated, organized and cross-referenced zebrafish research data. Find us at https://zfin.org
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zfinmod.bsky.social
[Announcement]
ZFIN Updates Data to GRCz12tu Reference Genome

ZFIN is excited to announce that we have updated our site to use NCBI annotation data for the GRCz12tu reference genome. Please see our announcement here:
ZFIN Updates Data to GRCz12tu Reference Genome - News - Confluence
zfin.atlassian.net
Reposted by Zebrafish Information Network (ZFIN)
burgesslab.bsky.social
#zebrafish genome update, our T2T assembly of the inbred strain of AB (M-AB) generated by my buddy Nori Sakai has now been released at NCBI and will be a second reference genome for zebrafish (GRCz12ab):
JBQAYU000000000.1 Danio rerio :: NCBI
www.ncbi.nlm.nih.gov
zfinmod.bsky.social
[Job]
PhD Student and Postdoctoral Fellow Positions in Tissue Patterning and Regeneration, Peng Huang Lab, University of Calgary, Calgary, Canada

#zebrafish
zfin.atlassian.net
zfinmod.bsky.social
[Job]
Postdoctoral Positions in Zebrafish Neurobiology, Department of Cell, Developmental & Cancer Biology, Oregon Health & Science University, Portland, OR

#zebrafish
Postdoctoral Positions in Zebrafish Neurobiology, Department of Cell, Developmental & Cancer Biology, Oregon Health & Science University, Portland, OR - Jobs - Confluence
zfin.atlassian.net
zfinmod.bsky.social
[Workshop]
Lithuania-Taiwan Workshop, Genome Editing in Zebrafish: Knock-ins and their applications, August 18-20, 2025, Vilnius University Life Sciences Center, Vilnius, Lithuania

#zebrafish
Lithuania-Taiwan Workshop, Genome Editing in Zebrafish: Knock-ins and their applications, August 18-20, 2025, Vilnius University Life Sciences Center, Vilnius, Lithuania - News - Confluence
zfin.atlassian.net
Reposted by Zebrafish Information Network (ZFIN)
jeffreyafarrell.bsky.social
If you love Daniocell, but wish it could generate analyses specific to YOUR genes & cell types of interest, check out DaniocellDesktop - a new point-and-click app for Mac and Windows that enables reanalysis of the Daniocell data without programming: daniocell.nichd.nih.gov/desktop/ (1/4)
DaniocellDesktop logo, depicting a fish on a laptop screen.
Reposted by Zebrafish Information Network (ZFIN)
burgesslab.bsky.social
#Zebrafish genome reference update: it is now "live" on the UCSC genome browser at: genome.ucsc.edu/cgi-bin/hgTr...

I am working on getting it included in the zebrafish genome pull down menu with the previous assemblies but that isn't working yet.
GRCz12tu Apr. 2025 hub_6654484_GCF_049306965.1 NC_133182.1:26,805,496-26,815,496 UCSC Genome Browser v482
genome.ucsc.edu