#Hologenomics
Hologenomic prediction models incorporate host genetic effects, microbiome effects, and their combined contribution, using variance partitioning approaches.

We've recently termed this "Quantitative Hologenomics" at: www.science.org/doi/10.1126/...
The disciplinary matrix of holobiont biology
Uniting life’s seen and unseen realms guides a conceptual advance in research
www.science.org
February 3, 2026 at 4:28 PM
Glad to share our recent review on moving from genomes to hologenomes. Integrating host genomics & the microbiome improves prediction of complex traits and supports sustainable breeding in livestock & aquaculture 🐄🐷🐔🐑🐇🐟 doi.org/10.3389/fani...
#Hologenomics #Livestock #Aquaculture #PrecisionBreeding
Frontiers | From genomes to hologenomes: integrating host and microbiome data for complex trait prediction in livestock and aquaculture
Over recent decades, global livestock and aquaculture systems have significantly increased protein production, largely driven by advancements in nutrition, h...
doi.org
January 27, 2026 at 4:57 PM
THANKYOU to our amazing #PAG33 OneHealth Hologenomics speakers @keyfm.bsky.social @dsussfeld.bsky.social @annakovalenko.bsky.social @akang3705.bsky.social Kristina Kordova & Anders Götherström! Ancient plague & parvovirus! AMR genes! Bat ectoparasite microbiomes! & the clap is thriving in the USA! 🎉
January 16, 2026 at 5:29 PM
Thank you to Dr. Kevin Theis of Wayne State University for delivering today's MGI Research Seminar. His talk was entitled "The hologenomics of reproduction."
January 13, 2026 at 6:18 PM
Organisers
- @memartino.bsky.social | University of Padua
- Morten Limborg | @ucph.bsky.social

Invited Speaker
- TBC
January 8, 2026 at 8:08 AM
SMBE2026 Symposium L04 | Understanding adaptive evolution through the lens of hologenomics

📨 Abstract submission
smbe2026.org/abstracts

📋 Programme details
smbe2026.org/programme

#SMBE2026
January 8, 2026 at 8:08 AM
🌱New research uses conservation hologenomics—combining plant genomics with root-fungal analysis—to protect Denmark’s endangered orchids.

The team led by Ida Hartvig uncovered distinct orchid ecotypes linked to unique mycorrhizal partners. A big step toward smarter, holobiont-focused conservation. 🚀
December 8, 2025 at 8:07 AM
New paper alert 🔔

🦠Gill #microbes and #genetics work together to shape salmon #disease #resistance 💡

The applied #hologenomics group led by Associate Professor Morten Limborg has just published a new interesting study 🤩

Read more in the news story 👇
@dg.dk @ucph.bsky.social
Genetics and gill microbes work together to shape salmon disease resistance
A new open-access study reveals that both the genes of Atlantic salmon and the microbes living on their gills play crucial roles in how the fish resist Amoebic Gill Disease - a major health problem in...
ceh.ku.dk
November 13, 2025 at 9:53 AM
🌍 This week CNAG is hosting the 2nd Training & Networking Days of the @hologen.bsky.social project.

🧬 Alongside workshops and conferences, yesterday we welcomed participants to our advanced Sequencing Unit.

Proud to be part of this inspiring doctoral network in hologenomics!
#HoloGenomics #CNAG
November 12, 2025 at 8:18 AM
Thanks for another great annual visit @dg.dk 🤩

Today at our 6th visit the new director congratulated us with the prospects of continuing our research for another 4 years🦠

The most impressive talks were 5 super short to the point talks by our younger staff on their cool #hologenomics studies 🌟
November 6, 2025 at 3:52 PM
Aditya S. Malwe (from @hologenomics.bsky.social /
@barleymicrobreed.bsky.social ) on Plant hologenomics and multi-omics integration of plant phenotypes, genotypes and microbiome
#PMS2025
November 6, 2025 at 3:51 PM
Hologenomics Reveals Specialized Dietary Adaptations in the Mengla Snail‐Eating Snake
Hologenomics Reveals Specialized Dietary Adaptations in the Mengla Snail‐Eating Snake
Dietary adaptation studies from a holobiome perspective are scarce beyond mammals. This research reveals how genomic and microbial interactions drive dietary specialization in the Mengla snail-eating snake, with evidence of gut symbiont convergence between reptiles and mammals. These findings broaden the understanding of cross-species dietary adaptations and emphasize the hologenome's key role in evolution. Abstract Serpents, as highly adaptable vertebrates, provide robust models for studying the mechanisms of dietary specialization. Using an integrative multi-omics approach, encompassing host genomic, transcriptomic, proteomic, gut metagenomic, and enzymatic analyses, the mechanisms underlying dietary adaptations in the Mengla snail-eating snake ( Pareas menglaensis ), a species specialized in consuming snails is investigated. Adaptations supporting this diet included evolution of infralabial glands secreting toxin homologs and digestive enzymes, facilitating molluscan predation and digestion. This specialization has driven adaptive evolution in the host genome and shaped the gut microbiota, addressing both nutritional challenges (e.g., lipid deficiency) and digestive requirements (e.g., mucus degradation) associated with snail consumption. Notably, the functional convergence in microbial gene functions between reptiles and mammals highlights parallel evolutionary pathways in dietary specialization. These findings elucidate the genomic foundations of dietary specialization in P. menglaensis , offering broader insights into evolutionary adaptation within a holobiome framework.
advanced.onlinelibrary.wiley.com
October 28, 2025 at 10:46 AM
Great to see Tom Gilbert still holding the #microbiome flag high, focusing mostly on why we need to study wildlife microbiomes more, even in the #museomics session. 🦠

#hologenomics #eseb2025
Finally, the #museomics symposium. #ESEB2025
August 20, 2025 at 10:02 AM
@hologenomics.bsky.social is well represented at this #ESEB2025 week!

Today @hernmoral.bsky.social and @jrotwitguez.bsky.social presented their exciting research!!

#hologenomics
August 19, 2025 at 1:55 PM
Hologenomics Reveals Specialized Dietary Adaptations in the Mengla Snail‐Eating Snake.

Lipid deficiency, ammonia detoxification, and mucus degradation are all stacked into the Pareas #holobiont.

advanced.onlinelibrary.wiley.com/doi/10.1002/...
Hologenomics Reveals Specialized Dietary Adaptations in the Mengla Snail‐Eating Snake
Dietary adaptation studies from a holobiome perspective are scarce beyond mammals. This research reveals how genomic and microbial interactions drive dietary specialization in the Mengla snail-eating....
advanced.onlinelibrary.wiley.com
July 17, 2025 at 2:31 PM
Quantitative Hologenomics is a positively badass name for a computational discipline.
Quantitative Hologenomics is coming faster than most people think. The goal will be to identify the number and types of host and microbial genes, plus their putative interactions, that could explain #holobiont phenotypes.

doi.org/10.1101/2025...
July 9, 2025 at 2:00 PM
Quantitative Hologenomics is coming faster than most people think. The goal will be to identify the number and types of host and microbial genes, plus their putative interactions, that could explain #holobiont phenotypes.

doi.org/10.1101/2025...
July 8, 2025 at 2:01 PM
Matias Becker Burgos @matiasbeck.bsky.social presented and successfully defended his MSc thesis a while ago! 🎉
#microbiome #hologenomics 🐓🦠🧬
July 1, 2025 at 12:13 PM
🧵8/n @jazminrm.bsky.social: an assistant professor at the Center for Evolutionary Hologenomics at the University of Copenhagen tracing the evolution of plant and animal species through domestication using palaeogenomics. She will be leading sessions on data curation & unsupervised analyses
June 9, 2025 at 9:12 AM
Matias Becker Burgos @matiasbeck.bsky.social presented his MSc thesis work about genome-microbiome interactions in feral chickens today to the program! 🐓🦠🧬 Well done!

@animecol-uu.bsky.social #microbiome #mGWAS #hologenomics #feralization
June 5, 2025 at 2:47 PM
HOLOGENOMICS is crucial for mapping selected traits to HOLOBIONT features in breeding and management programs, ultimately leading to resolution of the nuclear and microbial bases of improved growth animalmicrobiome.biomedcentral.com/articles/10....
Host genome drives the microbiota enrichment of beneficial microbes in shrimp: exploring the hologenome perspective - Animal Microbiome
Background Pacific Whiteleg shrimp (Litopenaeus vannamei) is an important model for breeding programs to improve global aquaculture productivity. However, the interaction between host genetics and mic...
animalmicrobiome.biomedcentral.com
May 25, 2025 at 7:28 PM
🎉 Fantastic start to the @hologen.bsky.social in sunny Copenhagen! From 5-9th May we had a week of training, talks & new connections - including our 1st #HoloGen Symposium. Brilliant energy from our new PhD cohort - excited for the impactful years ahead! 💥
#Hologenomics #Microbiome #PhDLife #MSCADN
May 12, 2025 at 8:56 AM
🚀 The Hologen Symposium is here!
A training week of the Doctoral Network in Hologenomics (@hologen.bsky.social)

🗣️@mamartirenom.bsky.social, Structural Genomics Group Leader at CNAG, will present the discovery of fossil chromosomes

🗓️May 6th – Copenhagen
www.hologen-network.eu/hologen_symp...
May 5, 2025 at 8:04 AM
Not sure how familiar you are with Lewontin, but he's a compelling speaker. I enjoyed this 3-part talk he gave to the Sante Fe Institute in 2003. Linked is the 1st, but IMO 2nd is most interesting about genes, organisms & environment (youtu.be/ftzoa2dw3CQ). He'd have been a big fan of hologenomics
youtu.be
April 2, 2025 at 9:44 PM