#genomeAnnotation
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tobybarilbio.bsky.social
#TEsky #TEworldwide #Transposons #Bioinformatics #Bioconda #GenomeAnnotation #TransposableElements #Genomics #ComparativeGenomics
tobybarilbio.bsky.social Toby Baril @tobybarilbio.bsky.social · 8d
☕Earl Grey v7.0.0 brewed fresh☕

Nested TEs finally get the treatment they deserve: iterative detection of deep nesting, cleaner GFF annotations, and coverage stats that don’t double-count genomic space + a RepeatCraft edge-case fix.

Happy new year to the TE folks! 🧬

github.com/TobyBaril/Ea...
GitHub - TobyBaril/EarlGrey: Earl Grey: A fully automated TE curation and annotation pipeline
Earl Grey: A fully automated TE curation and annotation pipeline - TobyBaril/EarlGrey
github.com
January 5, 2026 at 3:12 PM
earlhaminst.bsky.social
💻🧬 Keen to learn about eukaryotic genome annotation?

Registration is now open for our 2026 online #genomeannotation course, led by our core #bioinformatics team.
Genome Annotation Workshop 2026
The Genome Annotation Workshop is designed to provide scientists with a comprehensive overview of eukaryotic genome annotation approaches.
buff.ly
January 2, 2026 at 11:00 AM
jsantoyo.bsky.social
Genome annotations matter: characterizing Ensembl hg38 annotations from 2014 to 2023. #mRNA #GenomeAnnotation #EnsemblGenes #Isoforms #BMCgenomics
link.springer.com/article/10.1...
December 9, 2025 at 11:30 AM
Join us Nov 18–20 for a Virtual Genome Annotation Workshop! Learn Linux, genome assembly, evidence-based annotation, & evaluation. No experience needed!

📅 10 AM – 2 PM ET
💻 MS Teams + recording
💰 $500 ($400 UConn)

Register: bioinformatics.uconn.edu/cbc-workshops/

#GenomeAnnotation #Bioinformatics
November 4, 2025 at 10:26 PM
earlhaminst.bsky.social
💻🧬 Keen to learn about eukaryotic genome annotation?

Registration is now open for our 2026 online #genomeannotation course, led by our core #bioinformatics team.

➡️ buff.ly/sonWCgT
Genome Annotation Workshop 2026
Providing scientists with a comprehensive overview of eukaryotic genome annotation approaches.
buff.ly
October 22, 2025 at 10:01 AM
galaxyproject.bsky.social
My internship experience with assembling genomes and annotating them during a 6 week internship at Freiburg Galaxy.
https://galaxyproject.org/news/2025-07-22-ming-li-internship/

##UseGalaxy ##GalaxyProject ##EOSC ##Bioinformatics ##Genomics ##GenomeAssembly ##GenomeAnnotation ##TrainingProgram (1/2)
Exploring Genomics with Galaxy: A Six-Week Internship Journey
My internship experience with assembling genomes and annotating them during a 6 week internship
galaxyproject.org
October 21, 2025 at 7:57 AM
jsantoyo.bsky.social
De novo annotation reveals transcriptomic complexity across the hexaploid wheat pan-genome. #WheatGenome #Hexaploid #GenomeAnnotation #Transcriptomics #PanGenome @natcomms.nature.com 🧬 🖥️
www.nature.com/articles/s41...
October 18, 2025 at 5:05 PM
funghimicologia.bsky.social
Annotation and functional prediction of RNA helicases in Ustilago maydis

#Ustilago
#Controlofpathogenicdevelopment
#genomeannotation
#RNAhelicases
#smutfungi

imafungus.pensoft.net/article/1517...
Annotation and functional prediction of RNA helicases in Ustilago maydis
RNA helicases are conserved enzymes found in both prokaryotes and eukaryotes. They function in all aspects of RNA metabolism and are known to influence various cellular and metabolic processes. In add...
imafungus.pensoft.net
October 5, 2025 at 8:12 AM
ergabiodiv.bsky.social
🔹 FAIR metadata for genome annotations: At #BioHackEU25, our #Annotation Committee teams up with the @researchdataall.bsky.social to build a unified framework for collecting, validating & harmonising FAIR metadata.
👉 www.erga-biodiversity.eu/post/erga-at... #genomeannotation #FAIRdata
ERGA at the BioHackathon Europe 2025
Are you interested in bioinformatics and eager to connect with peers worldwide while working on projects with direct applications for the life sciences? Join this year’s BioHackathon Europe between 3–...
www.erga-biodiversity.eu
September 26, 2025 at 8:29 AM
ergabiodiv.bsky.social
Later TODAY at 15:00 CEST! Efficient evidence-based genome annotation with EviAnn 🧬
👉 www.erga-biodiversity.eu/post/efficie... #genomeannotation #genomes #seminar #research #EviAnn @ebpgenome.bsky.social
September 23, 2025 at 7:17 AM
jsantoyo.bsky.social
MoGAAAP: A modular Snakemake workflow for automated genome assembly and annotation with quality assessment. #GenomeAssembly #GenomeAnnotation #GenomeQuality #Genomics #Bioinformatics @biorxiv-bioinfo.bsky.social 🧬 🖥️
www.biorxiv.org/content/10.1...
September 8, 2025 at 5:05 PM
jsantoyo.bsky.social
GFFx: A Rust-based suite of utilities for ultra-fast genomic feature extraction. #Genomics #Rust #GenomeAnnotation #GFF #GenomicFeatures @biorxiv-bioinfo.bsky.social 🧬 🖥️
www.biorxiv.org/content/10.1...
August 16, 2025 at 5:07 PM
guigolab.bsky.social
Great to see our PhD student Fabio Zanarello sharing his work yesterday at LongTREC summer school!
#LongReadsTranscriptomics #LongTREC #GenomeAnnotation #Bioinformatics #EarthBioGenomeProject
@crg.eu
longtrec.bsky.social LongTREC @longtrec.bsky.social · Jul 15
Fabio Zanarello has a goal in his session: explain how #LongReads sequencing is integrated in the non-model genome annotation workflow.

#LongReadsTranscriptomics #LongTREC #GenomeAnnotation #Bioinformatics #EarthBioGenomeProject
July 16, 2025 at 7:40 AM
longtrec.bsky.social
Fabio Zanarello has a goal in his session: explain how #LongReads sequencing is integrated in the non-model genome annotation workflow.

#LongReadsTranscriptomics #LongTREC #GenomeAnnotation #Bioinformatics #EarthBioGenomeProject
July 15, 2025 at 12:48 PM
physaliacourses.bsky.social
🚀 We’ve just kicked off our Introduction to Genome Annotation course with Francesco Cicconardi & Tereza Manousaki!
Excited to dive into gene prediction, transcriptome assembly, and annotation strategies with participants from around the globe. 🧬💻
#GenomeAnnotation #Bioinformatics
May 19, 2025 at 4:37 PM
Join us May 27–29 for a Virtual Genome Annotation Workshop! 🧬 Learn Linux, genome assembly, evidence-based annotation, and evaluation. No experience needed!

📅 10 AM – 2 PM ET
💻 Zoom + recording
💰 $500 ($400 UConn)

Register: bioinformatics.uconn.edu/cbc-workshops/

#GenomeAnnotation #Bioinformatics
May 5, 2025 at 8:55 PM
earlhaminst.bsky.social
The team used the REAT and Minos pipelines developed at the Earlham Institute. This approach has also been applied to annotate additional wheat wild relatives and as part of the @wheatinitiative.bsky.social. #GenomeAnnotation

@gemygk.bsky.social @swarbre.bsky.social
March 21, 2025 at 10:21 AM
jgperezsilva.bsky.social
New release of Ensembl beta is out!!!
Many new annotations available, including new #cattle reference #genome, and 2 #t2t cattle genomes for Tuli and Wagyu breeds! 🐮🐮🐮
#genomeAnnotation #farmedAnimalsGenetics

Go and check it out!!!
beta.ensembl.org
Ensembl
The new website of the Ensembl project
beta.ensembl.org
January 24, 2025 at 5:06 PM
jsantoyo.bsky.social
OMAnnotator: a novel approach to building an annotated consensus genome sequence. #GenomeAnnotation #Genomics #Bioinformatics 🧬 🖥️ @biorxivpreprint.bsky.social
www.biorxiv.org/content/10.1...
Source: https://www.biorxiv.org/content/10.1101/2024.12.04.626846v1.full.pdf
December 11, 2024 at 8:16 PM
evbc.bsky.social
Rfam 15.0 brings expanded genomes, improved RNA annotations, & new data types for advanced RNA research. Check out the latest updates! 🌟 #Bioinformatics #RNAresearch #GenomeAnnotation

📄 doi.org/10.1093/nar/...
EVBC👤: Sandra Triebel, Manja Marz
Rfam 15: RNA families database in 2025
Abstract. The Rfam database, a widely used repository of non-coding RNA families, has undergone significant updates in release 15.0. This paper introduces
doi.org
December 3, 2024 at 1:49 PM
jsantoyo.bsky.social
The Pfam protein families database: embracing AI/ML. #Pfam #ProteinDomains #GenomeAnnotation #AI #NAR #Bioinformatics 🧬 🖥️
academic.oup.com/nar/advance-...
The Pfam protein families database: embracing AI/ML
Abstract. The Pfam protein families database is a comprehensive collection of protein domains and families used for genome annotation and protein structure
academic.oup.com
November 26, 2024 at 12:07 AM
jsantoyo.bsky.social
The rice genome annotation project: an updated database for mining the rice genome. #RiceGenome #GenomeAnnotation #NAR 🧬 🖥️
academic.oup.com/nar/advance-...
The rice genome annotation project: an updated database for mining the rice genome
Abstract. Rice (Oryza sativa L.) is a major cereal crop that provides calories across the world. With a small genome, rice has been used extensively as a m
academic.oup.com
November 25, 2024 at 11:59 PM
nikostr.scholar.social.ap.brid.gy
Seems like it's time for a new #introduction! I've just started a postdoc with Colin Olito and Bengt Hansson at #LundUniversity. I'll be working with #sexchromosome #evolution in Wikstroemia, doing #genomics, #genomeannotation, and other #bioinformatics things related to that. I'm an avid […]
Original post on scholar.social
scholar.social
August 20, 2025 at 9:46 PM
katharinahoff.bsky.social
Looking forward to PAG in January! We will bring exciting news about BRAKER with different types and amounts of extrinsic evidence 😀 #genomeannotation #bioinformatics
December 8, 2023 at 10:27 AM
physaliacourses.bsky.social
Don't miss our upcoming #GenomeAssembly and #GenomeAnnotation course in March with
@giulio_formenti and @GuidoRGallo! Course Details: physalia-courses.org/courses-work...

Join us to enhance your knowledge and skills in genome assembly and annotation! #Bioinformatics
October 26, 2023 at 1:50 PM