🙏 I want to acknowledge @NFDI4Microbiota @deNBI cloud, @seqeralabs @nextflowio Ambassador Program, and WorkAdventu.re for their various infrastructure support of the event
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December 11, 2025 at 6:01 PM
🙏 I want to acknowledge @NFDI4Microbiota @deNBI cloud, @seqeralabs @nextflowio Ambassador Program, and WorkAdventu.re for their various infrastructure support of the event
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Metataxonomic insights into the effects of enhanced nitrogen addition on the bacterial communities in the tropical paddy soil of West Bengal, India https://www.biorxiv.org/content/10.64898/2025.12.02.691912v1
December 4, 2025 at 2:17 AM
Metataxonomic insights into the effects of enhanced nitrogen addition on the bacterial communities in the tropical paddy soil of West Bengal, India https://www.biorxiv.org/content/10.64898/2025.12.02.691912v1
Metataxonomic insights into the effects of enhanced nitrogen addition on the bacterial communities in the tropical paddy soil of West Bengal, India https://www.biorxiv.org/content/10.64898/2025.12.02.691912v1
December 4, 2025 at 2:17 AM
Metataxonomic insights into the effects of enhanced nitrogen addition on the bacterial communities in the tropical paddy soil of West Bengal, India https://www.biorxiv.org/content/10.64898/2025.12.02.691912v1
📃 Lucas-Ruiz F, et al. Intrahepatic donor microbiota-based metataxonomic signature detected in organ preservation solution enables prediction of short-term liver transplant outcomes. Gut. 2025. 🧪
gut.bmj.com/content/earl...
gut.bmj.com/content/earl...
Intrahepatic donor microbiota-based metataxonomic signature detected in organ preservation solution enables prediction of short-term liver transplant outcomes
Background Liver transplantation (LT) remains hampered by post-transplant complications. While gut microbiota dysbiosis has been linked to transplant outcomes, the role of the intrahepatic graft’s nat...
gut.bmj.com
November 18, 2025 at 7:24 PM
📃 Lucas-Ruiz F, et al. Intrahepatic donor microbiota-based metataxonomic signature detected in organ preservation solution enables prediction of short-term liver transplant outcomes. Gut. 2025. 🧪
gut.bmj.com/content/earl...
gut.bmj.com/content/earl...
SHAP-based binarization enhances metataxonomic machine learning with application to gut microbiota of inflammatory bowel disease
->Nature | More from Lil Dr Glen EcoChat at BigEarthData.ai
->Nature | More from Lil Dr Glen EcoChat at BigEarthData.ai
SHAP-based binarization enhances metataxonomic machine learning with application to gut microbiota of inflammatory bowel disease
MCC is shown in Table 2, whereas, AUC, Positive Predictive Value (PPV), Negative Predictive Value (NPV), accuracy, sensitivity, specificity, are shown in Supplementary Tables from 1 to 6. Random Forest demonstrated the best performance in terms of MCC when the...
www.nature.com
November 8, 2025 at 10:00 AM
MetaScope: A High-Resolution Framework for Species-Level 16S Metataxonomic Classification. #16S #Metagenomics #Genomics #Bioinformatics @biorxiv-bioinfo.bsky.social 🧬 🖥️
www.biorxiv.org/content/10.1...
www.biorxiv.org/content/10.1...
September 8, 2025 at 9:15 AM
MetaScope: A High-Resolution Framework for Species-Level 16S Metataxonomic Classification. #16S #Metagenomics #Genomics #Bioinformatics @biorxiv-bioinfo.bsky.social 🧬 🖥️
www.biorxiv.org/content/10.1...
www.biorxiv.org/content/10.1...
MetaScope: A High-Resolution Framework for Species-Level 16S Metataxonomic Classification https://www.biorxiv.org/content/10.1101/2025.08.29.673160v1
September 5, 2025 at 1:49 AM
MetaScope: A High-Resolution Framework for Species-Level 16S Metataxonomic Classification https://www.biorxiv.org/content/10.1101/2025.08.29.673160v1
MetaScope: A High-Resolution Framework for Species-Level 16S Metataxonomic Classification https://www.biorxiv.org/content/10.1101/2025.08.29.673160v1
September 5, 2025 at 1:49 AM
MetaScope: A High-Resolution Framework for Species-Level 16S Metataxonomic Classification https://www.biorxiv.org/content/10.1101/2025.08.29.673160v1
The metataxonomic analysis also enabled precise species- and subtype-level classification, particularly for Blastocystis and Entamoeba spp., revealing high colonization rates and frequent mixed infections.
August 30, 2025 at 10:32 AM
The metataxonomic analysis also enabled precise species- and subtype-level classification, particularly for Blastocystis and Entamoeba spp., revealing high colonization rates and frequent mixed infections.
Compared to conventional microscopy, the metataxonomic approach demonstrated superior performance in identifying Strongyloides stercoralis, while Trichuris trichiura was more effectively detected through microscopy, likely due to challenges in DNA extraction from resistant eggshells.
August 30, 2025 at 10:32 AM
Compared to conventional microscopy, the metataxonomic approach demonstrated superior performance in identifying Strongyloides stercoralis, while Trichuris trichiura was more effectively detected through microscopy, likely due to challenges in DNA extraction from resistant eggshells.
#PubSaludMurcia Intrahepatic donor microbiota-based metataxonomic signature detected in organ preservation solution enables prediction of short-term liver transplant outcomes @AreaUnoArrixaca
doi.org
August 16, 2025 at 11:55 AM
#PubSaludMurcia Intrahepatic donor microbiota-based metataxonomic signature detected in organ preservation solution enables prediction of short-term liver transplant outcomes @AreaUnoArrixaca
New research in #RESMedVetEnt
Metataxonomic profiles of bacterial and parasitic communities in #Amblyomma spp. #ticks collected from wildlife in Colombia: Implications for tick-borne diseases
doi.org/10.1111/mve.12823
#InsectVectors #InsectBorneDiseases #Metataxonomy
@wiley.com
Metataxonomic profiles of bacterial and parasitic communities in #Amblyomma spp. #ticks collected from wildlife in Colombia: Implications for tick-borne diseases
doi.org/10.1111/mve.12823
#InsectVectors #InsectBorneDiseases #Metataxonomy
@wiley.com
July 17, 2025 at 10:10 AM
New research in #RESMedVetEnt
Metataxonomic profiles of bacterial and parasitic communities in #Amblyomma spp. #ticks collected from wildlife in Colombia: Implications for tick-borne diseases
doi.org/10.1111/mve.12823
#InsectVectors #InsectBorneDiseases #Metataxonomy
@wiley.com
Metataxonomic profiles of bacterial and parasitic communities in #Amblyomma spp. #ticks collected from wildlife in Colombia: Implications for tick-borne diseases
doi.org/10.1111/mve.12823
#InsectVectors #InsectBorneDiseases #Metataxonomy
@wiley.com
Applying machine learning to classify table olives using bacterial metataxonomic data
->Nature | #MachineLearning #Data | More info from EcoSearch
->Nature | #MachineLearning #Data | More info from EcoSearch
Applying machine learning to classify table olives using bacterial metataxonomic data
In this study, the predictive and classificatory capabilities of different ML models—CART, RF, and XGB—were evaluated to explain the behavior of various target variables including olive processing type, olive cultivar, country of origin, and isolation matrix of the samples, working...
www.nature.com
July 5, 2025 at 2:57 AM
Longitudinal study of the udder microbiome of Norwegian red dairy cows using metataxonomic and shotgun metagenomic approaches: Insights into pathogen-driven microbial adaptation and succession https://www.biorxiv.org/content/10.1101/2025.04.04.647183v1
April 5, 2025 at 3:18 AM
Longitudinal study of the udder microbiome of Norwegian red dairy cows using metataxonomic and shotgun metagenomic approaches: Insights into pathogen-driven microbial adaptation and succession https://www.biorxiv.org/content/10.1101/2025.04.04.647183v1
Longitudinal study of the udder microbiome of Norwegian red dairy cows using metataxonomic and shotgun metagenomic approaches: Insights into pathogen-driven microbial adaptation and succession https://www.biorxiv.org/content/10.1101/2025.04.04.647183v1
April 5, 2025 at 3:18 AM
Longitudinal study of the udder microbiome of Norwegian red dairy cows using metataxonomic and shotgun metagenomic approaches: Insights into pathogen-driven microbial adaptation and succession https://www.biorxiv.org/content/10.1101/2025.04.04.647183v1
Internal Transcribed Spacers Enable Species-Level Metataxonomic Analysis of Ciliated Protozoa academic.oup.com/ismecommun/a... #jcampubs
Internal Transcribed Spacers Enable Species-Level Metataxonomic Analysis of Ciliated Protozoa
Abstract. Traditional morphology-based ciliate classification is often time-consuming and inaccurate, necessitating molecular approaches. Although 18S rRNA
academic.oup.com
February 11, 2025 at 5:13 PM
Internal Transcribed Spacers Enable Species-Level Metataxonomic Analysis of Ciliated Protozoa academic.oup.com/ismecommun/a... #jcampubs
Our bachelor student, Caroline, graduated today. She did a great job evaluating the current state of #metataxonomic profiling of #AsgardArchaea. What a great way to end the year and start the Xmas holidays. @bentzontilia.bsky.social
December 20, 2024 at 12:39 PM
Our bachelor student, Caroline, graduated today. She did a great job evaluating the current state of #metataxonomic profiling of #AsgardArchaea. What a great way to end the year and start the Xmas holidays. @bentzontilia.bsky.social
Internal Transcribed Spacers as Phylogenetic Markers Enable Species-level Metataxonomic Analysis of Ciliated Protozoa https://www.biorxiv.org/content/10.1101/2024.02.02.578691v1
Internal Transcribed Spacers as Phylogenetic Markers Enable Species-level Metataxonomic Analysis of Ciliated Protozoa https://www.biorxiv.org/content/10.1101/2024.02.02.578691v1
Background: The conventional morphology-based classification of ciliates is often inaccurate and tim
www.biorxiv.org
February 8, 2024 at 3:06 AM
Internal Transcribed Spacers as Phylogenetic Markers Enable Species-level Metataxonomic Analysis of Ciliated Protozoa https://www.biorxiv.org/content/10.1101/2024.02.02.578691v1
Internal Transcribed Spacers as Phylogenetic Markers Enable Species-level Metataxonomic Analysis of Ciliated Protozoa https://www.biorxiv.org/content/10.1101/2024.02.02.578691v1
Internal Transcribed Spacers as Phylogenetic Markers Enable Species-level Metataxonomic Analysis of Ciliated Protozoa https://www.biorxiv.org/content/10.1101/2024.02.02.578691v1
Background: The conventional morphology-based classification of ciliates is often inaccurate and tim
www.biorxiv.org
February 8, 2024 at 3:06 AM
Internal Transcribed Spacers as Phylogenetic Markers Enable Species-level Metataxonomic Analysis of Ciliated Protozoa https://www.biorxiv.org/content/10.1101/2024.02.02.578691v1
Integration of metataxonomic datasets into microbial association networks highlights shared bacterial community dynamics in fermented vegetables https://www.biorxiv.org/content/10.1101/2023.11.10.566590v1
Integration of metataxonomic datasets into microbial association networks highlights shared bacterial community dynamics in fermented vegetables https://www.biorxiv.org/content/10.1101/2023.11.10.566590v1
The management of food fermentation is still largely based on empirical knowledge, as the dynamics o
www.biorxiv.org
November 14, 2023 at 6:49 PM
Integration of metataxonomic datasets into microbial association networks highlights shared bacterial community dynamics in fermented vegetables https://www.biorxiv.org/content/10.1101/2023.11.10.566590v1
Integration of metataxonomic datasets into microbial association networks highlights shared bacterial community dynamics in fermented vegetables https://www.biorxiv.org/content/10.1101/2023.11.10.566590v1
Integration of metataxonomic datasets into microbial association networks highlights shared bacterial community dynamics in fermented vegetables https://www.biorxiv.org/content/10.1101/2023.11.10.566590v1
The management of food fermentation is still largely based on empirical knowledge, as the dynamics o
www.biorxiv.org
November 14, 2023 at 6:49 PM
Integration of metataxonomic datasets into microbial association networks highlights shared bacterial community dynamics in fermented vegetables https://www.biorxiv.org/content/10.1101/2023.11.10.566590v1
Metataxonomic analysis of halophilic archaea community in two geothermal springs sources in southern Tunisian Sahara https://www.biorxiv.org/content/10.1101/2023.10.24.563781v1
Metataxonomic analysis of halophilic archaea community in two geothermal springs sources in southern Tunisian Sahara https://www.biorxiv.org/content/10.1101/2023.10.24.563781v1
In this study, we assess the phylogenetic diversity of the halophilic archaeal community of biotechn
www.biorxiv.org
October 25, 2023 at 3:17 AM
Metataxonomic analysis of halophilic archaea community in two geothermal springs sources in southern Tunisian Sahara https://www.biorxiv.org/content/10.1101/2023.10.24.563781v1
Metataxonomic analysis of halophilic archaea community in two geothermal springs sources in southern Tunisian Sahara https://www.biorxiv.org/content/10.1101/2023.10.24.563781v1
Metataxonomic analysis of halophilic archaea community in two geothermal springs sources in southern Tunisian Sahara https://www.biorxiv.org/content/10.1101/2023.10.24.563781v1
In this study, we assess the phylogenetic diversity of the halophilic archaeal community of biotechn
www.biorxiv.org
October 25, 2023 at 3:17 AM
Metataxonomic analysis of halophilic archaea community in two geothermal springs sources in southern Tunisian Sahara https://www.biorxiv.org/content/10.1101/2023.10.24.563781v1