Ilnam Kang
@ilnamkang.bsky.social
88 followers 150 following 52 posts
https://orcid.org/0000-0003-2815-1735
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Reposted by Ilnam Kang
evgenii-protasov.bsky.social
New insights into the evolution and metabolism of the bacterial phylum Candidatus Acidulodesulfobacteriota through metagenomics
#microbiology #bacteria
@microbiomej.bsky.social
environmentalmicrobiome.biomedcentral.com/articles/10....
New insights into the evolution and metabolism of the bacterial phylum Candidatus Acidulodesulfobacteriota through metagenomics - Environmental Microbiome
Candidatus Acidulodesulfobacterales, a formerly proposed bacterial order within the Deltaproteobacteria lineage, represents an ecologically significant group in sulfur-rich environments. Their diversity and functional potential in artificial acid mine drainage (AMD) ecosystems have been well studied; however, their distribution and ecological role in marine hydrothermal sulfides remain poorly understood. Here we integrated publicly available metagenome-assembled genomes (MAGs) with a newly reconstructed MAG from hydrothermal sulfides to perform comprehensive phylogenetic, metabolic, and host-virus interaction analyses. Phylogenomic and 16S rRNA gene analyses indicated that this lineage represents a distinct phylum-level clade, leading us to propose the designation Ca. Acidulodesulfobacteriota. Metabolic reconstructions indicated a versatile lifestyle, encompassing pathways for carbon fixation, nitrogen fixation, sulfur metabolism, iron oxidation, and hydrogen oxidation. Notably, the concatenated DsrAB protein phylogeny and the mixed enzyme types involved in Dsr-dependent dissimilatory sulfur metabolism suggest that Ca. Acidulodesulfobacteriota may represent a transitional lineage in the evolutionary shift from reductive to oxidative Dsr metabolism. Viral auxiliary metabolic genes (AMGs) associated with this phylum were predicted to modulate host metabolic pathways, including folate biosynthesis and sulfur metabolism, highlighting intricate host-virus interactions. These findings advance our understanding of the evolution, metabolic potential, and ecological roles of Ca. Acidulodesulfobacteriota in biogeochemical cycling.
environmentalmicrobiome.biomedcentral.com
Reposted by Ilnam Kang
biorxiv-microbiol.bsky.social
Ecological constraints foster both extreme viral-host lineage stability and mobile element diversity in a marine community https://www.biorxiv.org/content/10.1101/2025.10.10.681744v1
Reposted by Ilnam Kang
linsalrob.bsky.social
🦠Join the legendary @viromegirl.bsky.social lab

Jobs in marine micro, virology & genomics
💻 Viral 'omics in seagrass
🧬 Marine microbial & bioinformatics
🧫 Vibrio phage + iron biogeochemistry
🎓 sea urchin–ciliate diseases

👉 www.marine.usf.edu/genomics/app...

#MarineVirology #Phagesky #Microbiome
Welcome to the Breitbart Lab - Genomics
We are modern virus hunters, using metagenomic sequencing to discover viruses in a wide range of environments and hosts. Have fun exploring the marvels of microbiology on this website!
marine.usf.edu
Reposted by Ilnam Kang
rachelmwheatley.bsky.social
Is a healthy microbiome one that is rich in phages? 🦠 Excited to share our paper out in Lancet Microbe with @bkoskella.bsky.social & @dholtappels.bsky.social where we test whether virome diversity can be used a broad signature of microbiome health 📈
lancetmicrobe.bsky.social
New research article

Evaluation of bacteriophages as a signature of #microbiome health: a systematic review and meta-analysis

www.thelancet.com/journals/lan...

#IDSky #ClinMicro #ViroSky #Phage #OpenAccess #OA
Reposted by Ilnam Kang
evelienadri.bsky.social
For those of you working on tailed #phages, this is the virus realm for you!
#Duplodnaviria #virus #taxonomy

The Profile in #JGenVirol provides the citable reference. More details in the chapter on the ICTV website: ictv.global/report/chapt...
Reposted by Ilnam Kang
noahfierer.bsky.social
New paper out demonstrating how we can use strain-level analyses of soil metagenomes to investigate the biogeographical patterns exhibited by a dominant group of soil bacteria (Bradyrhizobium)
academic.oup.com/ismej/advanc...
Validate User
academic.oup.com
Reposted by Ilnam Kang
ryancook94.bsky.social
Happy to say this has now been published in @cp-cellreports.bsky.social 🫁🦠 #Phages #Viromics

www.cell.com/cell-reports...
Reposted by Ilnam Kang
stephenturner.us
Efficient and accurate search in petabase-scale sequence repositories www.nature.com/articles/s41... 🧬🖥️🧪
MetaGraph: metagraph.ethz.ch
Code: github.com/ratschlab/me...
Reposted by Ilnam Kang
jcamthrash.bsky.social
Carbon source diversity shapes bacterial interspecies interactions academic.oup.com/ismej/advanc... #jcampubs
Reposted by Ilnam Kang
jcamthrash.bsky.social
SAR11 ecotypes across ocean basins change with depth due to changes in light and oxygen academic.oup.com/ismej/advanc... #jcampubs 🌊
Reposted by Ilnam Kang
jcamthrash.bsky.social
Active microorganisms and potential metabolic pathways mediating anaerobic degradation of DMSP in anoxic saltmarsh sediment academic.oup.com/ismecommun/a... #jcampubs
Reposted by Ilnam Kang
jcamthrash.bsky.social
Cellular-level control on global ocean deoxygenation driven by phytoplankton ecophysiology www.biorxiv.org/content/10.1... #jcampubs
Reposted by Ilnam Kang
kawatosatoshi.bsky.social
🚀 Released gbdraw v0.6.0!

- Added dinucleotide skew plotting to linear mode. Fixed the bug where only GC skew could be drawn.

- Added links to relevant sections of the documentation throughout the web app help menu.

Try out:👉 gbdraw.streamlit.app
A grid of 12 circular E. coli  genome maps showing dinucleotide skew plots for GC, CG, AG, GA, CT, TC, TG, GT, CA, AC, AT, and TA. Each circle displays color-coded genome annotations (CDS, rRNA, tRNA, etc.) around the outer ring, with inner line plots showing positive and negative dinucleotide skew values.
Below the grid, a linear representation of two E. coli genomes shows annotated tracks, GC content, and GC skew plots, with two genomes linked with ribbons representing BLASTN hits. Note that the lower track (pathogenic strain O157:H7 Sakai) has multiple prophage insertions (shaded with orange) that are absent from the upper track (the laboratory strain K-12). Further below are five linear genome comparison diagrams of Hepatoplasmataceae mollicutes, each with colored gene annotations, GC content and GC skew plots, and gray ribbons indicating TBLASTX hits across genomes.
Reposted by Ilnam Kang
cathyhernandez.bsky.social
Very happy to share that I will be starting as an Assistant Professor in the department of Biological Sciences at the University of South Carolina in January! My group will be working on environmental phage ecology and evolution, and I am recruiting for the upcoming year (more info below).
A graphic advertising phage ecology and evolution research at the University of South Carolina, showing a central image of a tide pool flanked by a photo of an agar plate containing diverse microbes and a TEM image of a virus particle.
Reposted by Ilnam Kang
microbiome.bsky.social
Thinking about a postdoc in microbiome science?
Our lab at the MPI for Biology (Tübingen) builds on the culture I established at Cornell: collaborative, creative, and internationally diverse. Postdocs lead their own projects with secure funding. Join us!
#PostdocJobs #HostMicrobe #AcademicJobs
Reposted by Ilnam Kang
radecker.bsky.social
🪸🧪 We’re hiring! Join our ERC-funded group at the @hifmb.de in Oldenburg, Germany to explore the cellular origins of photosymbiosis:⁣

𝟏 𝐏𝐨𝐬𝐭𝐝𝐨𝐜 + 𝟐 𝐏𝐡𝐃𝐬 𝐩𝐨𝐬𝐢𝐭𝐢𝐨𝐧𝐬.⁣
Deadlines: Oct 29 & Nov 5. Links below. ⁣

Questions: [email protected]
#Photosymbiosis #HIFMB #ERC #AcademicJobs
Reposted by Ilnam Kang
alejandrorgijon.bsky.social
I am extremely happy to share our latest manuscript "Widely-distributed freshwater microorganisms with streamlined genomes co-occur in cohorts with high abundance". This project started back in 2021-2022 and after a long time, it sees the light today!

www.nature.com/articles/s41...
Widely-distributed freshwater microorganisms with streamlined genomes co-occur in cohorts with high abundance - Scientific Reports
Scientific Reports - Widely-distributed freshwater microorganisms with streamlined genomes co-occur in cohorts with high abundance
www.nature.com
Reposted by Ilnam Kang
Reposted by Ilnam Kang
oschwengers.bsky.social
Dear community, Bakta needs your help!

To further improve the functional annotation of "hypothetical" CDS, me and @gbouras13.bsky.social, we are looking for the worst Bakta-annotated bacterial genomes ;-)

(1/2)
Reposted by Ilnam Kang
brockhurstlab.bsky.social
New preprint!

Ever wondered why only a fraction of genomes encode CRISPR immunity? 🧬 🦠

Turns out CRISPR is rarely beneficial against virulent phages, being most beneficial against those for which resistance mutations are rare!

An epic effort by Rosanna Wright

www.biorxiv.org/content/10.1...
Resistance mutation supply modulates the benefit of CRISPR immunity against virulent phages
Only a fraction of bacterial genomes encode CRISPR-Cas systems but the selective causes of this variation are unexplained. How naturally virulent bacteriophages (phages) select for CRISPR immunity has...
www.biorxiv.org
Reposted by Ilnam Kang