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Edinburgh Genomics @edgenome.bsky.social · Aug 20

A few places are still available for this training course 🐍🖥️🧬

Don’t miss out, secure your place today and get ready to boost your research! 🚀

🗒️ Registration will be open until Thursday, 28th August 👇

Edinburgh Genomics @edgenome.bsky.social · Aug 4

📢 Ready to level up your coding? Join our next training course:

🐍 Advanced Python for Biologists
📅 1–5 Sept 2025 | 💻 Live online
🔗 Register: genomics.ed.ac.uk/event/advanc...

🧬 A hands-on course for life scientists ready to boost their coding skills in data analysis & tool development.

#Python 🖥️🧬

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Reposted by Edinburgh Genomics

Javier Santoyo @jsantoyo.bsky.social · Aug 12

📣 Big shout-out to Edinburgh Genomics team & Alex Twyford for leading this work on teaching plant genomics! 🌱🧬🖥️🎓
Many thanks to all participants & to ONT for supplying reagents!
#Bioinformatics #Genomics #Training @edgenome.bsky.social @nanoporetech.com
🔗 nph.onlinelibrary.wiley.com/doi/10.1002/...

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Edinburgh Genomics @edgenome.bsky.social · Aug 12

📣 Fantastic opportunity to join Joris Veltman’s outstanding group at the Institute of Genetics and Cancer, the University of Edinburgh, advancing research in reproductive genomics and genomic medicine 🚀🖥️🧬

📅 Deadline: 1 Sept

@jorisveltman.bsky.social @uoe-igc.bsky.social @edinburgh-uni.bsky.social

Joris Veltman @jorisveltman.bsky.social · Aug 8

Looking for a new opportunity in computational genomics? Join our group @uoe-igc.bsky.social @edinburgh-uni.bsky.social

Deadline September 1!

elxw.fa.em3.oraclecloud.com/hcmUI/Candid...

Lecturer in Computational Genomics

Establishing an innovative research line as Lecturer in Computational Genomics related to reproductive disorders and genomic medicine. This Lecturer post is full-time (35 hours per week); however, we ...

elxw.fa.em3.oraclecloud.com

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Edinburgh Genomics @edgenome.bsky.social · Aug 4

📢 Ready to level up your coding? Join our next training course:

🐍 Advanced Python for Biologists
📅 1–5 Sept 2025 | 💻 Live online
🔗 Register: genomics.ed.ac.uk/event/advanc...

🧬 A hands-on course for life scientists ready to boost their coding skills in data analysis & tool development.

#Python 🖥️🧬

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Reposted by Edinburgh Genomics

Elisabeth Bik - Perpetrator 5, a fraudulent microbiologist @elisabethbik.bsky.social · Jun 27

New guidance published @ukrio.bsky.social to support responsible AI use in research
This guidance, part of UKRIO’s priority workstream on AI and research integrity, provides a principle-based, researcher-focused resource adaptable across disciplines and technologies.
ukrio.org/ukrio-resour...

Embracing AI with integrity - UK Research Integrity Office

Embracing AI with integrity A practical guide for researchers The UK Research Integrity Office (UKRIO) has launched new guidance to help researchers navigate the research integrity challenges posed by...

ukrio.org

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Reposted by Edinburgh Genomics

PacBio @pacbio.bsky.social · Jun 27

#HiFisequencing with #PacBio is rewriting the rules for dried blood spot analysis.

With Ampli-Fi and SPRQ chemistry, even ultra-low input samples can deliver full, phased genomes that change the game for newborn screening.

Read more: bit.ly/4kbrzm6

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Edinburgh Genomics @edgenome.bsky.social · Jun 27

🧬 🖥️ That’s a wrap on our RNAseq Data Analysis course!

🙏 A big thank you to everyone who joined us online last week to explore the world of transcriptomics — from QC and read alignment to gene expression and interpretation.

@edinuni-irr.bsky.social @roslininstitute.bsky.social @uoe-igc.bsky.social

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Edinburgh Genomics @edgenome.bsky.social · Jun 11

Join our Single-cell RNA-seq Data Analysis course, running 23–25 June 2025 online!
✅ Process single-cell RNA-seq data
✅ Perform clustering and dimensionality reduction
✅ Identify cell types and gene expression patterns
📅 Book now: genomics.ed.ac.uk/event/single...

Single-Cell RNA-seq Data Analysis – Edinburgh Genomics

genomics.ed.ac.uk

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Reposted by Edinburgh Genomics

Javier Santoyo @jsantoyo.bsky.social · Jun 5

A new compression strategy to reduce the size of nanopore sequencing data. #DataCompression #Nanopore #SequenceData #Bioinformatics #Genomics @nanoporetech.com @genomeresearch.bsky.social‬ 🧬 🖥️
genome.cshlp.org/content/earl...

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Reposted by Edinburgh Genomics

Albert Vilella, PhD. @albertvilella.bsky.social · Jun 1

Roche has given more details of their SBX NGS technology: it'll be called Axelios, and we know it's aimed at competing against Illumina SBS technology, the technology the San Diego company acquired from Cambridge UK Solexa.
I'll give you a second to catch up with it... Axelios vs Solexa....

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Reposted by Edinburgh Genomics

Javier Santoyo @jsantoyo.bsky.social · Jun 2

Starship giant transposable elements cluster by host taxonomy using k-mer-based phylogenetics. #TransposableElements #TEs #Kmer #Phylogenetics #Genomics #Bioinformatics #G3 🧬 🖥️
academic.oup.com/g3journal/ad...

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Reposted by Edinburgh Genomics

Javier Santoyo @jsantoyo.bsky.social · Jun 3

The impact of PCR duplication on RNAseq data generated using NovaSeq 6000, NovaSeq X, AVITI, and G4 sequencers. #RNAseq #PCRduplication #Benchmarking #Genomics #GenomeBiology
genomebiology.biomedcentral.com/articles/10....

The impact of PCR duplication on RNAseq data generated using NovaSeq 6000, NovaSeq X, AVITI, and G4 sequencers - Genome Biology

Background Transcriptome sequencing (RNA-seq) is a powerful technology for gene expression profiling. Selection of optimal parameters for cDNA library generation is crucial for acquisition of…

genomebiology.biomedcentral.com

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Reposted by Edinburgh Genomics

Javier Santoyo @jsantoyo.bsky.social · Jun 4

Comparative assessment of the Sikun 2000 sequencing platform for whole genome sequencing. #ShortRead #Sequencer #ScientificData
www.nature.com/articles/s41...

Comparative assessment of the Sikun 2000 sequencing platform for whole genome sequencing - Scientific Reports

Scientific Reports - Comparative assessment of the Sikun 2000 sequencing platform for whole genome sequencing

www.nature.com

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Reposted by Edinburgh Genomics

Javier Santoyo @jsantoyo.bsky.social · Jun 4

Flexible, production-scale, human whole genome sequencing on a benchtop sequencer. #WGS #GenomeSequencing #NGS #Sequencing #Genomics #ElementBiosciences #Aviti ‪@elembio.bsky.social‬ 🧬🧪
bmcgenomics.biomedcentral.com/articles/10....

Flexible, production-scale, human whole genome sequencing on a benchtop sequencer - BMC Genomics

Human whole-genome sequencing (hWGS) provides comprehensive genomic information that can help guide research in disease prevention and treatment. Recent advancements in sequencing technology have…

bmcgenomics.biomedcentral.com

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Edinburgh Genomics @edgenome.bsky.social · Jun 4

That’s a wrap on our NEB RNA-seq Library Prep Lab Course! 🧪🔬
Big thanks to everyone who took part and made the course a success! 👏
Special thanks to Max Fritsch & Michael Skelly, from New England Biolabs 🦋, for their continued support!

Next course on RNA-seq data 👇
genomics.ed.ac.uk/event/rna-se...

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Edinburgh Genomics @edgenome.bsky.social · Jun 4

Want to get to grips with RNA-seq data? Join our online RNA-seq Data Analysis workshop from 16–19 June 2025!
✅ Perform differential expression analysis
✅ Use tools like STAR, DESeq2 & more
🖥️ Hands-on, expert-led, and beginner-friendly.
📅register now: genomics.ed.ac.uk/event/rna-se...

RNA-seq Data Analysis – Edinburgh Genomics

genomics.ed.ac.uk

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Edinburgh Genomics @edgenome.bsky.social · Jun 3

📣 We still have a couple of spots left in our online training courses next week!

🧬 Linux for Genomics (9–10 June)
👉 genomics.ed.ac.uk/event/introd...

📊 R for Biologists (11–13 June)
👉 genomics.ed.ac.uk/event/r-for-...

Don’t miss out - last places available!

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Edinburgh Genomics @edgenome.bsky.social · May 21

📣 There are still a few places available on our upcoming #RNASeq library prep Course, running next week, 28–29 May, at Edinburgh Genomics. 🧬🧪

⏳ Don’t miss out – registration closes soon!
👉 genomics.ed.ac.uk/event/rna-li...

#Sequencing #Genomics #RNAseq #LabTraining

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Edinburgh Genomics @edgenome.bsky.social · May 12

🔬 That’s a wrap on our Metabarcoding & Metagenomics workshop!
4 days of hands-on tutorials, microbiome insights, and plenty of Qiime2, NanoClust, and HUMAnN action 🧫💻
Huge thanks to our amazing participants & instructors!

#bioinformatics #metagenomics #EdGenTraining

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Edinburgh Genomics @edgenome.bsky.social · May 9

It was great to welcome colleagues from the
Sarawak Infectious Disease Centre this week!

🔬They visited Edinburgh Genomics, with productive discussion around genomics infrastructure, data generation, and long-read sequencing

🌏 Always a pleasure to connect with international teams driving innovation

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Edinburgh Genomics @edgenome.bsky.social · May 7

Join our 2-day RNA Library Preparation Lab Course at Edinburgh Genomics:

📅 28–29 May 2025
📍 Ashworth Labs, University of Edinburgh
🧪 Use @NEBiolabs NEBNext UltraExpress kits
🧬 Option to bring your own sample!

👉 genomics.ed.ac.uk/event/rna-li...

📸 See our last course in action!

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Edinburgh Genomics @edgenome.bsky.social · May 6

🚨 Our Intro to #Python course starts next week and there’s still space!

🧬 Perfect for #biologists & #genomic scientists
💻 🖥️Learn to automate tasks, analyse data & build #bioinformatics pipelines
📍 In-person

📅 Plus #R & #Linux courses in June!
🔗 Sign up: genomics.ed.ac.uk/training

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Edinburgh Genomics @edgenome.bsky.social · Apr 23

That’s a wrap on our first-ever Full Length 16S rRNA @pacbio.bsky.social Sequencing & Bioinformatics course! 🧪💻

From lab bench to species-level insight, participants processed their own data through QC, DADA2, taxonomic annotation & more, to create figures like this! 🧬👇

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Edinburgh Genomics @edgenome.bsky.social · Apr 11

We’ve just wrapped up the lab part of our new Full Length 16S rRNA @pacbio.bsky.social course 🧪🧬

Next week, we’ll take the data into bioinformatics—giving participants full end-to-end insight into the workflow. 🖥️

Join a future lab course 👉 genomics.ed.ac.uk/event/rna-li...

#Genomics #PacBio #16S

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Edinburgh Genomics @edgenome.bsky.social · Apr 8

Last week, we were delighted to host a seminar with Tushar from Scale Biosciences who shared exciting insights into their latest technologies and protocols for #SingleCell sequencing

Great to see so much interest and discussion around innovation in this fast-moving field!

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