Jochen Schwenk
@jochwenk.bsky.social
460 followers 220 following 48 posts
Professor of Translational Proteomics - Curious about 🩸proteins and proteomics. SciLifeLab, KTH Royal Institute of Technology and Human Protein Atlas.
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jochwenk.bsky.social
Not yet, setting this up for plasma seems complex enough for now. We touched upon other fluids towards the end, so if this works, one can imagine to expand into urine, CSF, WB or DBS…
jochwenk.bsky.social
Looking forward to seeing those observations!

Can you comment on whether the ratio between glyco- and non-glycopeptides changes with NP enrichment (as compared to neat samples)?
jochwenk.bsky.social
Interesting! Did you also try to first enrich of glycoproteins or remove the modifications prior to particle enriched MS? Would be curious to understand the impact of glycosylation on such a workflow.
jochwenk.bsky.social
We think it will be a win if we can convince the community to add 3-6 extra samples to theirs and "invest" into such connecting analyses. Once have data from our first pilot, we can reshape such schemes with input from you and others"
jochwenk.bsky.social
While these can serve as starting point for future refinements, many (pre-analytcial) aspects appeared that compliactes this effort. Obtaining donor-derived matrial from certain populations, for example, might create a bias, and producing serveral variants of one protein might still be too costly.
jochwenk.bsky.social
Thanks Karsten - even though we briefly mention how single-nucleotide polymorphisms or sequence variants influcnce protein measurements using affinity-based tests and MS, this aspect is certainly underdeveloped for now. We tried to focus on how we could overcome buidling a first set of references.
jochwenk.bsky.social
Metformin treatment affects the circulating proteome (such as GDF15) in persons with and without diabetes.

Great outcome of a close collaboration of the IMI-DIRECT, IMI-RHAPSODY and SCAPIS-Wellness consortia, studying multiple cohorts by advanced proteomics.

www.sciencedirect.com/science/arti...
The influence of metformin treatment on the circulating proteome
Metformin is one of the most used drugs worldwide. Given the increasing use of proteomics in trials, bioresources, and clinics, it is crucial to under…
www.sciencedirect.com
jochwenk.bsky.social
Differences between mouse and humans are expected but longitudinal effects hopefully follow more common mechanisms.

We (+ others) have compared proteomes in capillary and venous samples - differences driven by penetrated tissues (skin) and blood preparation (whole blood vs plasma).

More soon…
jochwenk.bsky.social
Can you elaborate why it doesn’t make sense to you?

We assume equilibrium in blood and no gradient due to sampling location or distance to an organ. Total blood volume is ~ 2 mL and sensitivity is far from 1 protein per 1 uL.
jochwenk.bsky.social
🚨Industry PhD position on advanced (proteo)omics data-driven analyses to study the molecular effects of #medication with #Pfizer.

Apply 👉 www.pfizer.com/about/career... to join the SciLifeLab & Wallenberg National Program for Data-Driven Life Science.

@scilifelab.se @kthuniversity.bsky.social
Job Details Page | Pfizer
www.pfizer.com
Reposted by Jochen Schwenk
nautilus.bio
Explore our new preprint featuring novel data generated on the Nautilus Proteome Analysis Platform! The preprint covers how we use Iterative Mapping to quantify tau proteoforms at the single-molecule level:

www.biorxiv.org/content/10.1...

#Proteomics #Neuroscience #Proteoforms #AlzheimersDisease
jochwenk.bsky.social
Congratulations Dr Vincent from the @mannlab.bsky.social 🎓
Reposted by Jochen Schwenk
Reposted by Jochen Schwenk
pastelbio.bsky.social
Illumina picks up proteomics developer SomaLogic from Standard BioTools for $425M | www.fiercebiotech.co...

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#proteomics #prot-article
jochwenk.bsky.social
Back from #EUPA2025 in a Saint Malo and am so impressed by the ECR talks, and so happy we gave them to opportunity to be on stage and shine ✨! Keep up the great work! You are the future of #proteomics

Also thanks to my excellent session co-chair @maurinefucito.bsky.social for making this fun!
Saint Malo
jochwenk.bsky.social
Pretty tidy and refreshing for those who dare.
jochwenk.bsky.social
Perspectives and tides of proteomics at #EUPA2025 in beautiful Saint-Malo
jochwenk.bsky.social
Looking forward to a Sunday on #genetics at #ESHG2025 and inspire to try #proteomics - @scilifelab.se #HumanProteinAtlas @kthuniversity.bsky.social