Joel Selkrig
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jselkrig.bsky.social
Joel Selkrig
@jselkrig.bsky.social
Updates from the Selkrig Lab. Exploring the function of secreted bacterial proteins in the context of infection and the gut microbiome.

www.ukaachen.de/kliniken-institute/institut-fuer-medizinische-mikrobiologie/forschung/ag-selkrig/
Reposted by Joel Selkrig
join our faculty at D-BSSE, ETHZ in Basel, Switzerland! New assistant prof position (tenure-track) in computational immunology, please share or apply. ethz.ch/en/the-eth-z...
Assistant Professor (Tenure Track) of Computational Immunology
ethz.ch
February 16, 2026 at 8:20 AM
Reposted by Joel Selkrig
Excited to announce my upcoming @snsf.ch Ambizione research group at EPFL on bacteria-host interactions, combining systems approaches and microphysiological models.
🚨 We have an open PhD position! More info on projects and how to apply here: elisabettacacace.github.io/BHI-Lab/
🧪
February 6, 2026 at 3:50 PM
Reposted by Joel Selkrig
Really happy to see this work out!

Super fun project with a great team. For me the highlight was that we finally were able to show the O-linked glycosylation systems of H. pylori/C. jejuni are general glycosylation systems which target non-flagellin proteins (suggest >10 years ago by click chem).
February 5, 2026 at 7:12 PM
Reposted by Joel Selkrig
A gift of an article from the inimitable Colin Kleanthous as he says a moving farewell to his laboratory. A brave, unrepentant and scientifically brilliant journey is described - please have a read, friends.

www.jbc.org/article/S002...
Bacteriocin biophysics: From protein-protein interaction models to navigators of the bacterial cell envelope
Bacteriocins are toxins deployed by bacteria to kill their competitors. Here, I reflect on my laboratory’s work on protein bacteriocins and their immunity proteins from Gram-negative bacteria. We unco...
www.jbc.org
February 2, 2026 at 12:39 PM
Reposted by Joel Selkrig
Full professor for plant ecology in Regensburg. #plantscience #plantscijobs

jobs.zeit.de/jobs/w3-prof...
February 2, 2026 at 10:43 AM
Reposted by Joel Selkrig
We are hiring for group leaders again — EBI is a great place to start your research group!

embl.wd103.myworkdayjobs.com/EMBL/job/Hin...
Research Group Leader
Do you want to lead groundbreaking research in computational biology? Join us at EMBL-EBI! EMBL's European Bioinformatics Institute (EMBL-EBI) is seeking talented and highly-motivated scientists to jo...
embl.wd103.myworkdayjobs.com
January 30, 2026 at 9:02 AM
Reposted by Joel Selkrig
It is widely accepted that #T6SS -mediated intoxication occurs only on solid surfaces, where prolonged cell-cell interactions are forced, and not in liquid environments. But is this generalization true? Our new preprint says it isn't. A 🧵 ...
biorxiv.org/content/10.6...
🦠
Aeromonas adhesins facilitate kin and non-kin attachment to enable T6SS-mediated antagonism in liquid
Bacterial ability to deploy the type VI secretion system (T6SS) against rivals requires prolonged cell-cell interactions. Such interactions are facilitated on solid surfaces but are assumed to be absent in liquid, leading to the conventional dismissal of T6SS-mediated competition in liquid environments. Here, we find that Aeromonas jandaei employs its T6SS to eliminate diverse bacterial competitors in liquid media. Using a workflow that monitors interbacterial competition via prey luminescence, we demonstrate that auto-aggregation and co-aggregation, facilitated by distinct adhesins, enable kin and non-kin recognition and intoxication in a T6SS-dependent manner. Furthermore, we show that another marine bacterium, Vibrio coralliilyticus , employs T6SS to intoxicate rivals in liquid media. Collectively, our results indicate that T6SS-mediated competition in liquid is more common in marine bacteria than previously anticipated, and can be facilitated by diverse molecular mechanisms that govern cell aggregation. ### Competing Interest Statement The authors have declared no competing interest. Israel Science Foundation, https://ror.org/04sazxf24, 1362/21, 2174/22 Swiss National Science Foundation, 51NF40_180541
biorxiv.org
January 28, 2026 at 12:37 PM
Reposted by Joel Selkrig
📣 We're hiring: Science Adviser
Do you have policy experience and the skill to translate complex science into actionable advice? Work with leading scientists to deliver evidence-based advice on national and global issues.

📍 Canberra ACT (Hybrid)
⏰ Apply by 27 Jan 2026

https://bit.ly/45B5oBf
January 10, 2026 at 2:11 AM
Reposted by Joel Selkrig
We’re looking for the discoverers and the ones who inspire a generation of scholars. Nominations are now open for the @psumbiome.bsky.social 2026 Microbiome Medal —the highest honor for extraordinary contributions to the global scientific community. Submit by April 10.

www.psu.edu/news/researc...
Nominate the next Microbiome Medal Laureate | Penn State University
The One Health Microbiome Center is seeking nominations for the next Microbiome Medal scholar, an honor established in 2025 to recognize outstanding contributions to scientific discovery and service.
www.psu.edu
January 27, 2026 at 6:00 PM
Reposted by Joel Selkrig
Lactic acid lover? Check out @ronni.bsky.social 's new work in
@cp-cellhostmicrobe.bsky.social showing how Enterococcus faecalis-derived LA suppresses macrophage activation, in turn promoting bacterial persistence and polymicrobial wound infection in vivo.
www.sciencedirect.com/science/arti...
Enterococcus faecalis-derived lactic acid suppresses macrophage activation to facilitate persistent and polymicrobial wound infections
Macrophage activation is essential for innate immunity and antimicrobial defense. We show that Enterococcus faecalis suppresses macrophage activation …
www.sciencedirect.com
January 27, 2026 at 7:11 PM
Reposted by Joel Selkrig
We are looking for a new RA to join our team working on host-pathogen interactions during Salmonella infection. The appointment is for two years and you will join a diverse team, using cell and protein biochemistry to further our understanding of pathogenesis. my.corehr.com/pls/uoxrecru...
Job Details
my.corehr.com
January 26, 2026 at 4:20 PM
Reposted by Joel Selkrig
A major element of the effort is the ReproSci platform, an #OpenScience infrastructure where any field can catalogue studies, highlight claims, establish strength of evidence, and invite community comments & data.

reprosci.epfl.ch

ReproSci is there for the community to tackle pos result bias.

4/4
reprosci.epfl.ch
January 24, 2026 at 8:01 AM
Reposted by Joel Selkrig
This is such hard news to process. Such an amazing scientist and inspiration for so many of us.
www.embl.org/news/embl-an...
In remembrance of Peer Bork  | EMBL
EMBL and its community are deeply saddened by the death of Peer Bork, the organisation’s Interim Director General.
www.embl.org
January 16, 2026 at 6:01 PM
Reposted by Joel Selkrig
20 | Peer Bork and the scientific candy shop
Apple: podcasts.apple.com/us/podcast/n...
Spotify: open.spotify.com/episode/17ux...
20 | Peer Bork and the scientific candy shop
Podcast Episode · Night Science · 09/02/2022 · 29m
podcasts.apple.com
January 18, 2026 at 12:52 AM
Reposted by Joel Selkrig
Peer Bork died yesterday 💔 which shocked me. In 2003 I did a short-term fellowship in Peer’s lab because I idolized him. I met Martin there & we wrote this paper together. Peer was great at bringing people together; a master collaborator with a rare ability to think up big ideas.
January 18, 2026 at 12:52 AM
Reposted by Joel Selkrig
Enterococcus fans: Check out our latest on E. faecalis EET, advancing our understanding of both the fundamental physiology of this bug and new mechanisms of its virulence. This is the product of a thrilling collaboration with friends in Singapore @gthibault.bsky.social led by @aarontan.bsky.social.
We’ve discovered how the superbug E. faecalis prevents chronic wounds from healing.

It’s not a toxin. It’s metabolism.

The bacteria use extracellular electron transport (EET) to electrochemically generate ROS, effectively "freezing" skin cells in place.

doi.org/10.1126/sciadv.aeb5297
Enterococcus faecalis redox metabolism activates the unfolded protein response to impair wound healing
E. faecalis EET generates ROS, which induces the UPR in keratinocytes, inhibiting in vitro migration.
doi.org
January 17, 2026 at 5:57 AM
Reposted by Joel Selkrig
📢 We are hiring 📢 1st round of recruiting for our ERC project BacImmune-Decode! @erc.europa.eu
We are looking for a postdoc for wet-lab work on regulation of phage defence systems in bacteria using high-throughput microbial genetics. Check it out: lnkd.in/es7AE968
#Hiring #Postdoc #Microbiology
LinkedIn
This link will take you to a page that’s not on LinkedIn
lnkd.in
January 14, 2026 at 8:55 AM
Reposted by Joel Selkrig
Mark your calendars for a new round of @globalimmuno.bsky.social !
Honored and excited to be part of the lineup this year!
2026 is here! We’re excited to share Global Immunotalks first semester poster, featuring an outstanding lineup!

Please share and help us spread the word!
January 12, 2026 at 9:54 PM
Reposted by Joel Selkrig
RIL-seq boosts the study of sRNAs. Here comes its first application to intracellular bacteria. Plus, 10 years after its characterization, we now present an RNA sponge of Salmonella PinT.
Congrats to @kooshapour.bsky.social & great collaboration w/ @jorg-vogel-lab.bsky.social!
doi.org/10.1093/nar/...
Intramacrophage RIL-seq uncovers an RNA antagonist of the Salmonella virulence-associated small RNA PinT
Abstract. Salmonella virulence chiefly relies upon two major pathogenicity islands, SPI-1 and SPI-2, which enable host cell invasion and intracellular surv
doi.org
December 27, 2025 at 2:06 PM
Reposted by Joel Selkrig
We’re hiring 2 Postdocs (f/m/d) in Drug–Microbiome–Host Interactions 🦠💊

Focus: how non-antibiotic drugs shape the gut microbiome, drug efficacy & side effects.

#PostdocJobs #Microbiome #AcademicJobs

Full job ad:
lisamaierlab.com/wp-content/u...
lisamaierlab.com
December 22, 2025 at 2:08 PM
Reposted by Joel Selkrig
New preprint from the lab is out! 🥳

We systematically profiled all pairwise growth interactions between 36 representative human gut microbiome strains, and delved deeper into the molecular mechanisms behind specific growth interactions.

www.biorxiv.org/content/10.6...

👇
Systematic profiling of growth interactions in human gut microbiome species
Microbial interactions shape the composition and stability of the human gut microbiome. Yet, the molecular mechanisms underlying these relationships remain poorly understood. Here, we systematically p...
www.biorxiv.org
December 22, 2025 at 11:21 AM
Reposted by Joel Selkrig
🚨PhD position alert🚨

🔬Cryo-EM? ✅ 🧫Membrane proteins? - we've got 165 TMs for you! ✅

Join me and the team👥 in beautiful Amsterdam🚴 to untangle the amazing mycobacterial protein secretion machinery!

📝Apply here: tinyurl.com/mmxnfpnw

📆Deadline: 23 January

#PhDstudent #T7SS #cryoEM #newPI
Vacature — PhD candidate; Mechanism and assembly of type VII secretion system machineries
We are looking for an enthusiastic and motivated PhD candidate to join Dr. Catalin Bunduc’s team in the Molecular Microbiology Section of the Amsterdam Institute for Life and Environment (A-LIFE).
tinyurl.com
December 12, 2025 at 3:06 PM
Reposted by Joel Selkrig
Congratulations, Julia Mahamid!

Julia Mahamid receives the @dfg.de Leibniz Prize for her work on structural cell biology!

#LeibnizPreis
Und hier sind sie – die 10 Preisträger*innen des Gottfried Wilhelm #LeibnizPreis' 2026 – ausgezeichnet für ihre exzellenten Forschungsarbeiten und Errungenschaften in der Wissenschaft! 🏆👏
Die Verleihung der Preise feiern wir am 18. März in Berlin.
Einzelheiten & Kurzprofile: sohub.io/1uv1
December 11, 2025 at 10:12 AM
Reposted by Joel Selkrig
🔬 Call to create junior research groups at the Institut Pasteur

Focus: Infectious diseases, host-microbe interactions, vaccines
Special interest: AI methodologies

📅 Deadline: Feb 9, 2026
👥 2-12 years post-PhD

Apply now 📝 research.pasteur.fr/en/call/crea...

#JobOpportunity #Research
Creation of new junior research groups at the Institut Pasteur - Call for applications 2026 - Research
The Institut Pasteur is launching an international call to recruit new junior research group leaders leveraging cutting-edge transdisciplinary approaches to exploring infectious diseases, host-microbe...
research.pasteur.fr
December 8, 2025 at 8:53 AM
Reposted by Joel Selkrig
New paper from the lab!
Led by Patrick Müller: we show that non-antibiotic compounds — but not macrolide antibiotics — can induce an efflux pump that protects Bacteroidaceae from macrolides.
A neat twist on drug–microbe interactions... www.tandfonline.com/doi/full/10....
December 9, 2025 at 10:33 AM