Alister Burt
@alisterburt.bsky.social
360 followers 380 following 200 posts
Computational Cryo-EM/ET at Genentech Love people, the outdoors and building stuff Complexity is the enemy All opinions my own
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Reposted by Alister Burt
llorentealejandro.bsky.social
1/9 🚀 Big news! As a result of 5 years of my PhD, building on a 30-year dream of my PI Dr. Nancy Carrasco, we think we've found a new way to treat cancer! We’ve released our preprint & I'm so excited to share this story! 🧵
www.biorxiv.org/content/10.1...
#Science #proteinengineering #proteindesing
Engineering substrate selectivity in the human sodium/iodide symporter (NIS)
Iodide (I-) uptake mediated by the Na+/I- symporter (NIS) is the first step in the biosynthesis of the thyroid hormones, of which I- is an essential constituent. NIS couples the inward transport of I-...
www.biorxiv.org
alisterburt.bsky.social
so satisfying - question: are all the best microscopists Dutch?
alisterburt.bsky.social
This has been a real pain point for Warp users since we moved to Linux, psyched to see it solved

Awesome work @hamid13r.bsky.social ! Thank you for taking the time to share your solution more widely :-)
hamid13r.bsky.social
Working on #WarpTools I have the old problem of removing "bad tilts". These are views that I skipped in #etomo to get a better model...

I wrote a python code to turn the UseTilt to False in the XML files for those views and improve the tomo reconstruction.
#teamtomo
github.com/hamid13r/war...
warp_lamella_adapters/remove_bad_views.py at main · hamid13r/warp_lamella_adapters
A short optimized pipeline to get lamella tomography (with pretilt and with some tilts obscured or mistracked) to work well with Warp - hamid13r/warp_lamella_adapters
github.com
alisterburt.bsky.social
finally hit πthon
savannah.dev
The stable release of Python 3.14 is out now! Go, go, go update! 🙌

discuss.python.org/t/python-3-1...
Cute illustrated logo featuring a pink/peach colored pie displaying ‘3.14’ (pi), surrounded by two snakes in blue and yellow. The design is encircled by text reading ‘r-strings • zsid • free-threading • support • sub-interpreters • REPL highlighting • note colour • colour’ in a circular arrangement. The illustration uses a soft pastel color palette with blue, yellow, and pink tones, and includes decorative sparkle elements.
Reposted by Alister Burt
meiercredo.bsky.social
Check out our new preprint on an integrated pipeline combining in situ #cryo-ET with MALDI #MSImaging for single-cell identification and classification from previously analysed EM-grids.
Link: www.biorxiv.org/content/10.1...
Reposted by Alister Burt
jhschaef.bsky.social
Helical Reconstruction of Amyloids in cryoSPARC?
We present guidelines, limitations & future perspectives for processing amyloids in cryoSPARC @structurabio.bsky.social.
Great collaboration of the Kelly Lab and @landerlab.bsky.social #cryoEM #amyloid www.biorxiv.org/content/10.1...
Amyloid reconstructions from cryoSPARC
Reposted by Alister Burt
astrokatie.com
I think for me the most compelling answer for "why fund basic research?" (and the one most relevant to the people doing the work) is that humans are curious and finding stuff out makes us happy and fulfilled. Science is a thing humans like. Life would be more dull and sad if we didn't do it.

end/🧵
alisterburt.bsky.social
I don’t think they are exactly the same, just sometimes :-) simply saying that many people I admire have personalities people find grating/perceive as arrogant
alisterburt.bsky.social
you see lack of professionalism I see desire for authenticity and intellectual honesty
alisterburt.bsky.social
“If you have a productivity problem, you’re either not annoyed enough, you’re annoyed by something you can’t actually control, or you’re annoyed in the bad way, the kind that makes you want to skip town rather than dig in.” this resonated most for me
alisterburt.bsky.social
got this email this morning, gold!
Reposted by Alister Burt
Reposted by Alister Burt
superresolusian.bsky.social
BioImage analysis friends - King's are recruiting for a full-time, permanent facility position! Come and work with fun microscopes and fun people (and me!) - please share! www.kcl.ac.uk/jobs/126345-...
Bioimage Analysis Specialist | King's College London
www.kcl.ac.uk
alisterburt.bsky.social
Hah! I guess the existing system is also far from perfect
Reposted by Alister Burt
alisterburt.bsky.social
(currently in the pipeline)
alisterburt.bsky.social
Looks like I might not be able to stay in the US even if I want to…
alisterburt.bsky.social
cool computer graphics work from @cemyuksel.com and co seems to solve objects going through each other in simulations!

Great explainer/demos from Two Minute Papers, video title is kinda annoying when 5/6 authors are not from Nvidia

graphics.cs.utah.edu/research/pro...

youtu.be/7NF3CdXkm68?...
NVIDIA Just Solved The Hardest Problem in Physics Simulation!
YouTube video by Two Minute Papers
youtu.be