Anne Kupczok
@annecmg.bsky.social
1.5K followers 560 following 51 posts
Assistant professor at Wageningen University, interested in Comparative Microbial Genomics, Phage genomics, Evolution
Posts Media Videos Starter Packs
Reposted by Anne Kupczok
meehubs.bsky.social
We’re back! ✨ The next #MeeHubs26 is coming with 7 hubs across the globe and incredible lineups at each. Can’t wait to share more soon! meehubs.org
Home
meehubs.org
Reposted by Anne Kupczok
Reposted by Anne Kupczok
Reposted by Anne Kupczok
evolvedbiofilm.bsky.social
@annecmg.bsky.social opens this autumn Microbial Ecology symposium in Utrecht - connected/supported by @biosb.bsky.social
#NIME2025
annecmg.bsky.social
On paper one is hilarious. I use it to kick off my sequence search lecture. Good motivation to use blast 🤣
Reposted by Anne Kupczok
kylemojo.bsky.social
We are hiring! On the search for an ambitious post-doc with hot skills in metagenomics, metatranscriptomics and bioinformatics to join our EcoEnergeticS project with
@michaeladippold.bsky.social

Find the ad here: uni-tuebingen.de/zh/266340
Opportunities
uni-tuebingen.de
Reposted by Anne Kupczok
garushyants.bsky.social
hey bluesky 👋 visa hurdles mean I’m looking for opportunities outside the US. I’m a computational biologist (bacterial + phage genomics, postdoc in Koonin’s group @ NIH). I am interested in teaming up on funding apps. reach out if this resonates!
Reposted by Anne Kupczok
epcrocha.bsky.social
Willing to join us @pasteur.fr for a PhD for a project on how interactions between mobile genetic elements shape bacterial adaptation? Subject to be tailored to candidates with keen interest in evolution, genomics, computational biology, microbiology. Check www.pasteur.fr/en/education...
Reposted by Anne Kupczok
kostchristian.bsky.social
Only 10 days left to apply:

We are searching for a senior postdoc (3 +3 years) in the field of theoretical ecology and evolution.

The position provides the opportunity to closely interact with experimentalists and develop own research projects.

Please RT.

Details 👇:
shorturl.at/iiiOv
Reposted by Anne Kupczok
royalsocietypublishing.org
A new theme issue of #PhilTransB examines the evolutionary history of bacterial immune systems, their modes of action, and the patterns how different bacterial immune systems are distributed across different ecosystems. Read: buff.ly/Z4qdxY1
Reposted by Anne Kupczok
zachary-ardern.bsky.social
Looking forward to re-starting the Protein Structure Evolution (ProSE) seminar series next week!
We have a great line up of talks on cutting-edge work over the next few weeks.
Register here: tinyurl.com/prose-seminar2
claudiaalcar.bsky.social
The ProSE seminars are back after a summer break. The next speaker is Nir Ben-Tal on "Contrastive learning unites sequence and structure in a global representation of protein space".
Date: September 9
Time: 5pm CET
Register here: tinyurl.com/prose-seminar2

Please share!
🧪 #mevosky
Reposted by Anne Kupczok
linsalrob.bsky.social
Three postdoc positions are now open for applications! Live and work on Kaurna land (Adelaide) in sunny South Australia. We have beach views, wineries, kangaroos, and koalas.

Develop new synthetic biology to engineer and understand #phage, and computational tools for #phage and #microbiome analysis
Reposted by Anne Kupczok
biorxiv-evobio.bsky.social
De-novo promoters emerge more readily from random DNA than from genomic DNA https://www.biorxiv.org/content/10.1101/2025.08.25.672121v1
Reposted by Anne Kupczok
linsalrob.bsky.social
New in @asm.org #MMBR Computational function prediction of bacteria and phage proteins. How to annotate your #phage and #bacteria genomes

by @susiegriggo.bsky.social @bedutilh.bsky.social @gbouras13.bsky.social and Bob

#phagesky #microsky

journals.asm.org/doi/epub/10....
Examples of protein annotations across functional classification schemes. Yellow: hierarchical classification schemes, red: orthologous/homologous groups, and blue: methods using protein domain information. Protein structures were generated using the ColabFold Alphafold MMseqs2 interactive notebook (version 1.5.2) (57) and visualized using ChimeraX (58). (A) Functional labels associated with the glycogen synthase protein in Escherichia coli (UniprotKB P0A6U8). (B) Functional labels associated with Kehishuvirus sp. tikala major capsid protein (NCBI WEU69752.1).
annecmg.bsky.social
Thanks for the overview @bjesseshapiro.bsky.social Hope to catch up somewhere else!
Reposted by Anne Kupczok
bjesseshapiro.bsky.social
I'm super bummed to be missing #ESEB2025 @eseb2025.bsky.social due to a cancelled flight! Here's a quick overview of my talk "Gene- and genome-focused perspectives on microbial pangenomes" slated to be part of The Evolution of Microbial Pangenomes -- which I recommend you attend tomorrow (Fri) !
1/n
Reposted by Anne Kupczok
biorxiv-evobio.bsky.social
Leaving Academia: Insights from Evolutionary Biologists on Their Career Transitions and Job Satisfaction https://www.biorxiv.org/content/10.1101/2025.08.19.671061v1
Reposted by Anne Kupczok
jcamthrash.bsky.social
Investigating bacterial evolution in nature with metagenomics www.sciencedirect.com/science/arti... #jcampubs