Carsen Stringer
@computingnature.bsky.social
3.1K followers 2.5K following 30 posts
group leader @ HHMIJanelia, #neuroscience + AI 🔬 #cellpose | diversity and open-science for better science | Ⓥ | she/her | https://mouseland.github.io
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computingnature.bsky.social
What if… spontaneous neural activity 🧠 reflects the baseline rumblings of a brainwide dynamical system initialized for learning? We find that the rumblings have macroscopic properties like those emerging from linear symmetric, critical systems 🧵 #neuroscience #neuroAI www.biorxiv.org/content/10.1...
schematic of neural recordings from mouse V1, whole-brain, and hippocampus; neural activity traces from the population, showing more correlated activity in V1 and whole-brain recordings versus more decorrelated activity in hippocampus
Reposted by Carsen Stringer
juangallego.bsky.social
🚨Big news!🚨
The lab is relocating to Lisbon, joining a great team of experimental and theoretical neuroscientists, and the Neurotechnology Warehouse, a new initiative to bridge basic and translational research.

I'll be sharing postdoc openings soon. Come join us in this new incarnation of the lab!
champalimaudr.bsky.social
🧠🎼 What does it take to restore movement? Neuroscientist and engineer, @juangallego.bsky.social, joins the new Centre for Restorative Neurotechnology at the Champalimaud Foundation.

🔗 Find out more in this interview: www.fchampalimaud.org/news/juan-al...
Reposted by Carsen Stringer
msschwartz21.bsky.social
#geff v1 is released! 🎉 GEFF is a zarr-based Graph Exchange File Format with special support for tracking applications in Python and Java. Thank you to all the amazing developers who contributed at the Janelia 2025 Trackathon! liveimagetrackingtools.org/geff/
Reposted by Carsen Stringer
aaup.org
AAUP @aaup.org · 7d
BREAKING: WE WON!!!
💥 💥 💥

Federal Judge William G. Young ruled today in our lawsuit against the Trump administration that the policy of arresting, detaining, & deporting noncitizen students & faculty members for their pro-Palestinian advocacy violates the 1st Amendment.

Full ruling here:
Findings of Fact & Conclusions of Law – #261 in American Association of University Professors v. Rubio (D. Mass., 1:25-cv-10685) – CourtListener.com
Judge William G. Young: ORDER entered. FINDINGS OF FACT AND RULINGS OF LAW, PURSUANT TO FED. R. CIV. P. 52(A)(Sonnenberg, Elizabeth) (Additional attachment(s) added on 9/30/2025: # 1 Main Document) (J...
www.courtlistener.com
Reposted by Carsen Stringer
fannycazettes.bsky.social
Our new study featured in The Transmitter by @lauren-schneider.com! 🎉 Big thanks to @zeronoiselab.bsky.social and @computingnature.bsky.social for their comments on the work.
thetransmitter.bsky.social
Facial movements reflect a mouse’s decision-making patterns independent of their chosen action during a foraging task, per a new study.

By @lauren-schneider.com

#neuroskyence

www.thetransmitter.org/motor-behavi...
Reposted by Carsen Stringer
shimpeiishiyama.bsky.social
Mice do play with humans:
Our new study found that selective breeding makes mice more playful toward both humans and other mice.
We also found that both mice and hamsters produce distinct vocalizations depending on the species of their interaction partner.
authors.elsevier.com/a/1lsK5_3oCG...
authors.elsevier.com
Reposted by Carsen Stringer
scadsai.bsky.social
@scadsai.bsky.social training coordinator @haesleinhuepf.bsky.social provided insights into his professional career in the podcast series “The Microscopists.”
If you want to know why he'll never ask biologists for better images again, click here:
🍍 themicroscopists.bitesizebio.com/episodes/rob...
Reposted by Carsen Stringer
fannycazettes.bsky.social
Did you know that facial expressions reveal more than meets the eye? 🤯

Our new study shows that even a mouse's face 🐭 can reflect hidden neural computations🧠. Turns out, facial expressions are more than just emotions!

We're so excited to see this paper out @natneuro.nature.com 🎉
🔗: rdcu.be/eIQzO
Facial expressions in mice reveal latent cognitive variables and their neural correlates
Nature Neuroscience - The face reveals more than just emotion. Cazettes, Reato and colleagues show that subtle facial movements reveal hidden cognitive states, reflecting the brain’s ongoing...
rdcu.be
Reposted by Carsen Stringer
enirenberg.bsky.social
One thing that comforts me in the current era is that, despite everything, really cool science continues to be published:

www.science.org/doi/10.1126/...

This could be a breakthrough for managing so many autoimmune diseases (still, in mice—don't get too excited).
Adenosine 2A receptor–dependent activation of AMPK represses TH17 cell pathogenicity through epigenetic and metabolic reprogramming
Epigenetic reprogramming that promotes oxidative metabolism suppresses TH17 cell pathogenicity.
www.science.org
Reposted by Carsen Stringer
nicolasdenans.bsky.social
The WB-ExM protocol described here works with.... every sample we tested! Here a 3do quail embryo (white= pan-protein; red=MF20) www.biorxiv.org/content/10.1...
computingnature.bsky.social
Is visual cortex more like chatGPT or a masked autoencoder? Come to my BCCN seminar tomorrow at 10am ET on zoom (or read the paper) to find out! #neuroscience

Zoom: urldefense.com/v3/__https:/...
Paper: www.biorxiv.org/content/10.1...
qqzhang.bsky.social
Does predictive coding work in SPACE or in TIME? Most neuroscientists assume TIME, i.e. neurons predict their future sensory inputs. We show that in visual cortex predictive coding actually works across SPACE, just like the original Rao+Ballard theory #neuroscience
www.biorxiv.org/cgi/content/...
Reposted by Carsen Stringer
qqzhang.bsky.social
Does predictive coding work in SPACE or in TIME? Most neuroscientists assume TIME, i.e. neurons predict their future sensory inputs. We show that in visual cortex predictive coding actually works across SPACE, just like the original Rao+Ballard theory #neuroscience
www.biorxiv.org/cgi/content/...
Reposted by Carsen Stringer
vincentcostaphd.bsky.social
A spatially resolved transcriptomic atlas of the primate amygdala (human, macaque, and baboon) now out in Science Advances (www.science.org/doi/10.1126/...). The amygdala contains 32 types of neurons with many neuron types specific to particular subdivisions.

Lots of updates from the preprint!
Transcriptomic diversity of amygdalar subdivisions across humans and nonhuman primates
Specialized cell types and links to psychiatric disorders are revealed by genetic mapping of primate amygdala neurons.
www.science.org
Reposted by Carsen Stringer
guille-rochelle.bsky.social
In another exciting development our new preprint is online:
www.biorxiv.org/cgi/content/...

This is the work of my brilliant graduate student Katerina Kourkoulou in collaboration with Maggie Liu and Arnold Mathijssen. Here is a video of the subject of our study:
Reposted by Carsen Stringer
alexanderhuth.bsky.social
New paper with @mujianing.bsky.social & @prestonlab.bsky.social! We propose a simple model for human memory of narratives: we uniformly sample incoming information at a constant rate. This explains behavioral data much better than variable-rate sampling triggered by event segmentation or surprisal.
biorxiv-neursci.bsky.social
Efficient uniform sampling explains non-uniform memory of narrative stories https://www.biorxiv.org/content/10.1101/2025.07.31.667952v1
Reposted by Carsen Stringer
drdamienfair.bsky.social
I still get chills

Meet Mike
*30+ years severe depression
*first hospitalized @ 13y
*20 meds
*3 rounds of ECT
*2 near-fatal suicide attempts

Mike felt joy for the first time in decades after we turned on his new brain pacemaker or PACE

see videos, read paper, follow thread
doi.org/10.31234/osf...
Reposted by Carsen Stringer
cmc-lab.bsky.social
Wanna know about *internal* reinforcement learning? We'll show you seemingly random switches during perceptual multistability is a form informational foraging, is task-modulated & how RL explain them all! Poster B71, Wed 2-5pm, talk to @neuroprinciplist.bsky.social 2025.ccneuro.org/poster/?id=8...
Poster Presentation
2025.ccneuro.org
Reposted by Carsen Stringer
roxana-zeraati.bsky.social
Looking forward to attending #CCN2025 for the first time and presenting the first steps of my postdoc project! If you’re interested in how learning the temporal structure of the environment affects foraging decisions and how we’re testing this in a naturalistic experiment come by poster B90, Wed.
Reposted by Carsen Stringer
joolia.bsky.social
Because I am angry I will share this again. One of the reasons that Israel is able to target individuals so precisely is that it collects every phone call in Gaza and stores the recordings in Microsoft Azure, then uses AI to analyze and pick targets.
‘A million calls an hour’: Israel relying on Microsoft cloud for expansive surveillance of Palestinians
Revealed: The Israeli military undertook an ambitious project to store a giant trove of Palestinians’ phone calls on Microsoft’s servers in Europe
www.theguardian.com
Reposted by Carsen Stringer
Beyond outrageous: The IDF has confirmed killing noted Al Jazeera journalist Anas al-Sharif, and three of his colleagues, inside a tent for journalists outside Al-Shifa hospital.
Call your reps and insist on a halt to US support of these war crimes.
www.theguardian.com/world/2025/a...
Prominent Al Jazeera journalist killed in Israeli airstrike on Gaza
Anas al-Sharif, known for frontline coverage, died with three colleagues in an attack outside al-Shifa hospital
www.theguardian.com