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Charles University Structural Bioinformatics Group

@cusbg.bsky.social

350 followers 340 following 30 posts

Research group at the intersection of structural bioinformatics 🧬 and machine learning 🤖. Developing http://prankweb.cz, http://apoholo.cz, https://rnacentral.org/r2dt Lab: bioinformatics.cuni.cz/cusbg Heads: @davhox.bsky.social & @majek.bsky.social

prankweb.cz,

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Charles University, Faculty of Science @sciencecharles.bsky.social · 22d

🌿 The Botanical Garden of Charles University’s Faculty of Science turns 250! Founded in 1775, it is one of Central Europe’s oldest university gardens.

Join us for a special anniversary program 15–21 Sept 2025. 🎉

@unikarlova.cuni.cz @botanickazahradauk.bsky.social

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Reposted by Charles University Structural Bioinformatics Group

Karel "CaCO3" Berka @krapnik.bsky.social · 22d

today #3Dprint protein is ferritin (PDB: 6I36)

available here:
www.printables.com/model/141627...

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Reposted by Charles University Structural Bioinformatics Group

CATH-Gene3D @cathgene3d.bsky.social · 22d

Kickstarting our symposium “Protein Annotations in the age of AI” at UCL!

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Reposted by Charles University Structural Bioinformatics Group

Adam Pecina @adampecina.bsky.social · 29d

We opened Day 2 of our #CECAM flagship workshop in Prague with the CECAM director Andrea Cavalli, highlighting steered #MD, dynamical docking & the complexity of binding energetics, and the challenges ahead. 🚀

#CECAMinPrague @iocbprague.bsky.social @cecamevents.bsky.social @iocbtech.bsky.social

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Reposted by Charles University Structural Bioinformatics Group

Gonzalo Parra @gonzaparra.bsky.social · Aug 23

CATH turns 30 years old 🥳
They celebrate with a Symposium on September 16th! I'll be presenting our work: "An Atlas of Energetic Evolutionary Constraints Across Protein Families"

Unbelievable selection of speakers! So if you are around London, you can register to attend:
tinyurl.com/2pnk8hj5

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Reposted by Charles University Structural Bioinformatics Group

Tomáš Pluskal @pluskal-lab.org · Aug 21

The first day of our bioML symposium at @iocbprague.bsky.social went very well. It is amazing to see how fast this field is moving forward. Thanks to everyone for the fantastic talks! 🤖🧬

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Reposted by Charles University Structural Bioinformatics Group

Radoslav Krivak @rdkbio.bsky.social · Jun 27

🚀 GPU-accelerated docking to P2Rank-predicted pockets

Ahmet Sarigun @asarigun.bsky.social · Jun 26

I'm excited to share our new preprint: PocketVina — a fast, scalable, and accurate multi-pocket molecular docking method.

Docking remains essential in early-stage drug discovery, but recent deep learning–based approaches still face limitations in generating...

Thread - (1/n)

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Reposted by Charles University Structural Bioinformatics Group

Marian Novotny @majek.bsky.social · Jun 19

Fantastic to work with so many talented people! today at departmental conference of cell biology department of @sciencecharles.bsky.social . Many thanks to our guests from Israel for joining us and sharing their results and time with us

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Charles University Structural Bioinformatics Group @cusbg.bsky.social · Jun 16

Congratulations! 🎉

Karel "CaCO3" Berka @krapnik.bsky.social · Jun 16

On personal #Alphafoldology notice - I’ve got my Professorship in Biomolecular Chemistry and Structural Biology today.

I have received my Professorship in Biomolecular Chemistry and Structural Biology today from the hands of our President Petr Pavel

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Reposted by Charles University Structural Bioinformatics Group

Radoslav Krivak @rdkbio.bsky.social · Jun 10

🚀 Our paper on the updated PrankWeb, a web app for protein binding site prediction using P2Rank, is out in
@narjournal.bsky.social. Now with docking integration!

👨‍💻 Try it: prankweb.cz
📄 Paper: doi.org/10.1093/nar/...
💻 GitHub: github.com/cusbg/prankweb

Developed at @cusbg.bsky.social

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Reposted by Charles University Structural Bioinformatics Group

Dr Javier Sánchez Utgés @javierutges.bsky.social · May 19

I am #exhilarated to share that our new paper "LIGYSIS-web: a resource for the analysis of protein-ligand binding sites" is now published in @narjournal.bsky.social! After almost two years of development and more than 600 commits, LIGYSIS-web is out!

📜 : tinyurl.com/utges-LIGYSI...

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Reposted by Charles University Structural Bioinformatics Group

David Hoksza @davhox.bsky.social · Apr 28

Join us for the next #Bioinformatics seminar hosted by
@sciencecharles.bsky.social and @mff.unikarlova.cuni.cz. Nora Martin from CRG : “How does the structure of a genotype-phenotype map shape variation and evolutionary processes?”.

📅 Wed, Apr 30
🕕 17:20

bioinformatics.cuni.cz/seminar

Binformatics seminar

Petr Daněček David Hoksza Marian Novotný

bioinformatics.cuni.cz

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Reposted by Charles University Structural Bioinformatics Group

Tomáš Pluskal @pluskal-lab.org · Apr 11

Back in July 2023 we organized a small bioML symposium at @iocbprague.bsky.social, and it turned out to be a very pleasant and successful event. This summer we are following up with a great line-up of speakers. Please register for free, deadline May 30. tinyurl.com/bioMLPrague25

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Reposted by Charles University Structural Bioinformatics Group

Gonzalo Parra @gonzaparra.bsky.social · Apr 10

3DSIG has now joined BlueSky!! Follow us there to keep building a strong community around the fields of Structural Bioinformatics and Computational Biophysics!

3DSIG @3dsig.bsky.social · Apr 10

💻Hello world! We are 3D-SIG: Structural Bioinformatics and Computational Biophysics, track of the International Society for Computational Biology (ISCB) @iscb.bsky.social 🙌

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Reposted by Charles University Structural Bioinformatics Group

Karel "CaCO3" Berka @krapnik.bsky.social · Apr 4

A new preprint from our lab at @fchupol.bsky.social

bioRxivpreprint @biorxivpreprint.bsky.social · Apr 4

Pathogenicity Patterns in Cytochrome P450 Family https://www.biorxiv.org/content/10.1101/2025.03.30.646180v1

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Reposted by Charles University Structural Bioinformatics Group

Radoslav Krivak @rdkbio.bsky.social · Apr 3

🧪🇨🇿 A reminder: there’s a starter pack with Czech science institutions and research labs. A bunch of new ones have joined Bluesky lately -- and some, like Charles University (@charlesuni.cuni.cz), have fully made the move here from the other place.

Charles University Structural Bioinformatics Group @cusbg.bsky.social · Nov 20

A starter pack with science institutions and research labs in Czech Republic.

Let us know what is missing!

go.bsky.app/Bjam2aQ