Eduardo Andrés León
@eandresleon.bsky.social
PhD, Head of the Bioinformatics Unit at IPBLN, miARma-Seq, miRGate. BMC Bioinformatics & BMC Genomics & PLoS ONE Associate Editor. Elected member of @SEBiBC_es
Reposted by Eduardo Andrés León
Today in the IPBLN, Eduardo Andrés León, PhD, from the IPBLN Bioinformatics Unit, has given a WIP presentation titled: ‘State-of-the-art bioinformatics at the IPBLN: from archives to results’.
Thanks Edu!!
@eandresleon.bsky.social
Thanks Edu!!
@eandresleon.bsky.social
November 25, 2025 at 11:03 AM
Today in the IPBLN, Eduardo Andrés León, PhD, from the IPBLN Bioinformatics Unit, has given a WIP presentation titled: ‘State-of-the-art bioinformatics at the IPBLN: from archives to results’.
Thanks Edu!!
@eandresleon.bsky.social
Thanks Edu!!
@eandresleon.bsky.social
It's going to be a huge pleasure to talk about miARma. If you have bulk RNA-Seq data and no idea how to analyze it, this is your tool
📌Join us for our online seminar on bioinformatic tools! 🎙️Speakers: Eduardo Andrés León presenting miARma-Seq (at 11:00-11:40 CET) & José Luis Ruiz presenting reanalyzerGSE (at 11:50 -12:30 CET) @ipblncsic.bsky.social 📆 July 2nd 📺 Live stream (goo.su/56Ua4) Don´t miss it!
June 30, 2025 at 11:06 AM
It's going to be a huge pleasure to talk about miARma. If you have bulk RNA-Seq data and no idea how to analyze it, this is your tool
Reposted by Eduardo Andrés León
🚀 Streamline your bioinformatics workflows! 🧬 Join our Nextflow workshop, May 19-21, 2025—perfect for beginners. 💻 Sign up: www.ecseq.com/workshops/wor... #Nextflow #Bioinformatics #Genomics
February 14, 2025 at 6:45 AM
🚀 Streamline your bioinformatics workflows! 🧬 Join our Nextflow workshop, May 19-21, 2025—perfect for beginners. 💻 Sign up: www.ecseq.com/workshops/wor... #Nextflow #Bioinformatics #Genomics
Reposted by Eduardo Andrés León
Introducing @gestaltsp.bsky.social
We’re growing with already >1000 members.
Come be part of spatial omics revolution!!! @ioavlachos.bsky.social @lgmartelotto.bsky.social @naturegenet.bsky.social rdcu.be/d8qHT
#spatial #omics #technology #computation #tissue #singlecell
We’re growing with already >1000 members.
Come be part of spatial omics revolution!!! @ioavlachos.bsky.social @lgmartelotto.bsky.social @naturegenet.bsky.social rdcu.be/d8qHT
#spatial #omics #technology #computation #tissue #singlecell
Introducing the Global Alliance for Spatial Technologies (GESTALT)
Nature Genetics - This Comment outlines the creation of the Global Alliance for Spatial Technologies (GESTALT), a collaborative initiative aimed at fostering the growth and standardization of...
rdcu.be
February 3, 2025 at 2:22 PM
Introducing @gestaltsp.bsky.social
We’re growing with already >1000 members.
Come be part of spatial omics revolution!!! @ioavlachos.bsky.social @lgmartelotto.bsky.social @naturegenet.bsky.social rdcu.be/d8qHT
#spatial #omics #technology #computation #tissue #singlecell
We’re growing with already >1000 members.
Come be part of spatial omics revolution!!! @ioavlachos.bsky.social @lgmartelotto.bsky.social @naturegenet.bsky.social rdcu.be/d8qHT
#spatial #omics #technology #computation #tissue #singlecell
Faecal microbiota transplantation in patients with systemic #sclerosis and lower gastrointestinal tract symptoms in Norway (ReSScue): a phase 2, randomised, double-blind, placebo-controlled trial - The Lancet Rheumatology www.thelancet.com/journals/lan...
Faecal microbiota transplantation in patients with systemic sclerosis and lower gastrointestinal tract symptoms in Norway (ReSScue): a phase 2, randomised, double-blind, placebo-controlled trial
Faecal microbiota transplantation with ACHIM was well tolerated in participants with
systemic sclerosis but did not result in an improvement in lower gastrointestinal
tract symptoms.
www.thelancet.com
February 3, 2025 at 4:14 PM
Faecal microbiota transplantation in patients with systemic #sclerosis and lower gastrointestinal tract symptoms in Norway (ReSScue): a phase 2, randomised, double-blind, placebo-controlled trial - The Lancet Rheumatology www.thelancet.com/journals/lan...
Da comienzo el III congreso de investigación PTS. Esperemos que haya más paridad en las charlas #congresoPTS
February 3, 2025 at 8:15 AM
Da comienzo el III congreso de investigación PTS. Esperemos que haya más paridad en las charlas #congresoPTS
Reposted by Eduardo Andrés León
Exploring SNP filtering strategies: the influence of strict vs soft core https://www.microbiologyresearch.org/content/journal/mgen/10.1099/mgen.0.001346 🧬🖥️🧪 code (rust): https://github.com/rrwick/Core-SNP-filter
January 22, 2025 at 9:00 PM
Exploring SNP filtering strategies: the influence of strict vs soft core https://www.microbiologyresearch.org/content/journal/mgen/10.1099/mgen.0.001346 🧬🖥️🧪 code (rust): https://github.com/rrwick/Core-SNP-filter
Hoy toca hablar de opciones de TFM (y otros) a los alumnos del máster en Bioinformática y Ciencia de datos en Medicina personalizada de precisión y Salud del ISCIIII. Si estás interesado en la biología computacional y bioinformática, el @bcbhubcsic.bsky.social del @csic.es es tu opción
January 16, 2025 at 6:43 PM
Hoy toca hablar de opciones de TFM (y otros) a los alumnos del máster en Bioinformática y Ciencia de datos en Medicina personalizada de precisión y Salud del ISCIIII. Si estás interesado en la biología computacional y bioinformática, el @bcbhubcsic.bsky.social del @csic.es es tu opción
Reposted by Eduardo Andrés León
What a cell does depends on its location. Experiments like single cell sequencing strip away signs of where a cell was in its original organ or tissue. New spatial -omics techniques collect in-depth molecular data from cells while retaining that spatial information. Learn more: youtu.be/izhZ9VB1jRM
Spatial -omics: "Location, location, location" applies to biology, too
YouTube video by Broad Institute
youtu.be
December 10, 2024 at 5:05 PM
What a cell does depends on its location. Experiments like single cell sequencing strip away signs of where a cell was in its original organ or tissue. New spatial -omics techniques collect in-depth molecular data from cells while retaining that spatial information. Learn more: youtu.be/izhZ9VB1jRM
rdcu.be/d2GHT spatial Transcritptomics: Method of the year for Nature
Method of the Year 2024: spatial proteomics
Nature Methods - Approaches for profiling the spatial proteome in tissues are the basis of atlas-scale projects that are delivering on their promise for understanding biological complexity in...
rdcu.be
December 6, 2024 at 5:55 PM
rdcu.be/d2GHT spatial Transcritptomics: Method of the year for Nature
Reposted by Eduardo Andrés León
December 5, 2024 at 7:24 PM
Reposted by Eduardo Andrés León
Women are under-represented at senior levels in #academia globally, & across all #science 🧪 disciplines, as shown by these "scissor-shaped curves" ✂️
So how can we ever achieve #gender #equality?
We discuss various strategies in this #Cell Commentary
#WomeninSTEM
www.cell.com/cell/fulltex...
🧵 1/
So how can we ever achieve #gender #equality?
We discuss various strategies in this #Cell Commentary
#WomeninSTEM
www.cell.com/cell/fulltex...
🧵 1/
November 25, 2024 at 12:38 PM
Women are under-represented at senior levels in #academia globally, & across all #science 🧪 disciplines, as shown by these "scissor-shaped curves" ✂️
So how can we ever achieve #gender #equality?
We discuss various strategies in this #Cell Commentary
#WomeninSTEM
www.cell.com/cell/fulltex...
🧵 1/
So how can we ever achieve #gender #equality?
We discuss various strategies in this #Cell Commentary
#WomeninSTEM
www.cell.com/cell/fulltex...
🧵 1/
Reposted by Eduardo Andrés León
Another example of the different results one gets from a Scanpy vs. Seurat analysis, in this case a Visium HD dataset from academic.oup.com/bioinformati...
13 vs. 20 clusters. And qualitatively different results, corroborating what we saw in biorxiv.org/content/10.1...
13 vs. 20 clusters. And qualitatively different results, corroborating what we saw in biorxiv.org/content/10.1...
November 25, 2024 at 6:10 PM
Another example of the different results one gets from a Scanpy vs. Seurat analysis, in this case a Visium HD dataset from academic.oup.com/bioinformati...
13 vs. 20 clusters. And qualitatively different results, corroborating what we saw in biorxiv.org/content/10.1...
13 vs. 20 clusters. And qualitatively different results, corroborating what we saw in biorxiv.org/content/10.1...
Reposted by Eduardo Andrés León
Starter a Spatial Tissue Profling/Omics/Biology Startup package. Will be updating often.
Please stop by again soon!
go.bsky.app/7a9Frz9
Please stop by again soon!
go.bsky.app/7a9Frz9
November 24, 2024 at 2:53 PM
Starter a Spatial Tissue Profling/Omics/Biology Startup package. Will be updating often.
Please stop by again soon!
go.bsky.app/7a9Frz9
Please stop by again soon!
go.bsky.app/7a9Frz9
Reposted by Eduardo Andrés León
“Like ‘old Twitter’: The scientific community finds a new home on @bsky.app
Commentary in #Science
www.science.org/content/arti...
Commentary in #Science
www.science.org/content/arti...
Like ‘old Twitter’: The scientific community finds a new home on Bluesky
After recent changes to Elon Musk’s X, a gradual migration turns into a stampede
www.science.org
November 24, 2024 at 3:02 PM
“Like ‘old Twitter’: The scientific community finds a new home on @bsky.app
Commentary in #Science
www.science.org/content/arti...
Commentary in #Science
www.science.org/content/arti...
Reposted by Eduardo Andrés León
Very good, concise summary of the gut-brain axis of communication and interoception
www.cell.com/current-biol... open-access
www.cell.com/current-biol... open-access
November 24, 2024 at 8:41 PM
Very good, concise summary of the gut-brain axis of communication and interoception
www.cell.com/current-biol... open-access
www.cell.com/current-biol... open-access
Reposted by Eduardo Andrés León
We're hiring a Bioinformatics Analyst 1 to do bioinformatic research on human nasal microbiota using human nasal epithelial organoids. Will work closely with our experienced bacterial bioinformatician. Great opportunities for authorships and for on-the-job learning. jobs.bcm.edu/job/Bioinfor...
November 20, 2024 at 6:05 PM
We're hiring a Bioinformatics Analyst 1 to do bioinformatic research on human nasal microbiota using human nasal epithelial organoids. Will work closely with our experienced bacterial bioinformatician. Great opportunities for authorships and for on-the-job learning. jobs.bcm.edu/job/Bioinfor...
Reposted by Eduardo Andrés León
Gene count estimation with pytximport enables reproducible analysis of bulk RNA sequencing data in Python https://academic.oup.com/bioinformatics/advance-article/doi/10.1093/bioinformatics/btae700/7905459 🧬🖥️🧪 https://github.com/complextissue/pytximport
November 22, 2024 at 4:30 PM
Gene count estimation with pytximport enables reproducible analysis of bulk RNA sequencing data in Python https://academic.oup.com/bioinformatics/advance-article/doi/10.1093/bioinformatics/btae700/7905459 🧬🖥️🧪 https://github.com/complextissue/pytximport
Reposted by Eduardo Andrés León
Here is a #compbio starter kit! go.bsky.app/QVPoZXp To all the #Bioinformatics #Genomics #MachineLearning folks: please RP and let’s build this together!
November 23, 2024 at 4:17 AM
Here is a #compbio starter kit! go.bsky.app/QVPoZXp To all the #Bioinformatics #Genomics #MachineLearning folks: please RP and let’s build this together!
Safety and Efficacy of Immunization with a Late-Liver-Stage Attenuated #Malaria Parasite www.nejm.org/doi/full/10....
Safety and Efficacy of Immunization with a Late-Liver-Stage Attenuated Malaria Parasite | NEJM
Currently licensed and approved malaria subunit vaccines provide modest, short-lived
protection against malaria. Immunization with live-attenuated Plasmodium falciparum
malaria parasites is an alte...
www.nejm.org
November 24, 2024 at 8:20 PM
Safety and Efficacy of Immunization with a Late-Liver-Stage Attenuated #Malaria Parasite www.nejm.org/doi/full/10....