expressionatlas.bsky.social
Expression Atlas
@expressionatlas.bsky.social
94 followers 12 following 10 posts
Expression Atlas and Single Cell Expression Atlas are @ebi.embl.org open science resources for #Gene and #Protein Expression. Follow us for release news & tips https://www.ebi.ac.uk/gxa and https://www.ebi.ac.uk/gxa/sc
www.ebi.ac.uk
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expressionatlas.bsky.social
Expression Atlas @expressionatlas.bsky.social · 16d
@opentargets.org just integrated a new differential expression dataset from @expressionatlas.bsky.social includes ~10,000 new evidence for 400 targets and 7 new diseases, adding ~6,000 unique target–disease associations. A huge boost for exploring disease biology & target discovery!
opentargets.org
Open Targets @opentargets.org · 20d
The Open Targets Platform autumn release is out! 🍂

We have ingested the full dataset of over 13 million enhancer-gene regulatory interactions in the human genome across 1,458 DNase-seq experiments covering 369 cell types and tissues from the ENCODE-rE2G model

blog.opentargets.org/open-targets...
Open Targets Platform 25.09 has been released!
The September 25 release includes enhancer-gene data predicted by ENCODE-rE2G, molQTL credible sets for targets, new options for the variant structural viewer, and a number of data updates from GWAS C...
blog.opentargets.org
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expressionatlas.bsky.social
Expression Atlas @expressionatlas.bsky.social · Jul 20
Exciting news! The latest @expressionatlas.bsky.social bulk release is out, featuring 4562 datasets across 67 species. Explore 12 new plant datasets from sorghum, rice, Arabidopsis and maize, 🌾 🌽 contributed by our Gramene Database collaborators. Don't miss out! 🧬
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expressionatlas.bsky.social
Expression Atlas @expressionatlas.bsky.social · Jul 11
The Functional Genomics Team at @ebi.embl.org is open to hosting #ARISE2 fellows! If you're interested in research infrastructure we welcome project ideas that support transcriptomics data reuse - incl. spatial, single-cell, or AI-ready infrastructure.

www.embl.org/training/ari...
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expressionatlas.bsky.social
Expression Atlas @expressionatlas.bsky.social · Jul 8
We are seeking a Scientific Database Curator at @ebi.embl.org in collaboration with the @saezlab.bsky.social and GSK.

This role involves wrangling public transcriptomic data - bulk, single-cell, and spatial - for translational use and integration into our open data resources

Deadline 20 July
saezlab.bsky.social
Saez-Rodriguez Group @saezlab.bsky.social · Jul 2
We have a curator position at @ebi.embl.org to work with GSK within a project to understand fibrotic processes (no PhD required). Deadline 20th July.

Please share 🙏

embl.wd103.myworkdayjobs.com/en-US/EMBL/j...
Scientific Database Curator – Fibrosis Transcriptomics
We are seeking a technically skilled and biologically literate Scientific Database Curator to join a focused initiative on fibrosis research, hosted at EMBL-EBI in collaboration with the Saez-Rodrigue...
embl.wd103.myworkdayjobs.com
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expressionatlas.bsky.social
Expression Atlas @expressionatlas.bsky.social · Jun 25
Our bioinformaticians will be attending #ISMBECCB2025!
Catch our talks and posters on @expressionatlas.bsky.social,
@bioconductor.bsky.social, and Persist-seq

#ISMBECCB #ISMB #ECCB #singlecell
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Reposted by Expression Atlas
europepmc.org
Europe PMC @europepmc.org · Jun 23
Can AI train on my openly licensed research? Do I retain copyright if I choose a CC BY license? Why can’t I reuse a figure from my own paper?

Get the answers in a webinar with Creative Commons, #EuropePMC & EMBL

🗓️ 9 Jul
⏰ 15:00 UTC
🔗 embl-org.zoom.us/webinar/regi...

#OpenScience #AcademicSky 🧪
Promotional slide for a webinar titled "What happens when you choose closed? What Creative Commons licenses mean for research and AI." The slide features photos and names of five speakers: Melissa Harrison (Europe PMC / EMBL-EBI), Katherine Hughes (EMBL), Taylor Campbell (Creative Commons), Monica Granados (Creative Commons), and Kat Walsh (Creative Commons). Logos for Europe PMC, Creative Commons, and EMBL are shown at the bottom. The background is green with white text.
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expressionatlas.bsky.social
Expression Atlas @expressionatlas.bsky.social · Jun 19
🔧 Dear users: Due to EBI-wide maintenance, Annotare will be unavailable today (Thurs 19 June) from 12pm to 1pm BST.
During this time, submission creation or editing will not be possible.
We apologise for the inconvenience and appreciate your understanding.
expressionatlas.bsky.social
Expression Atlas @expressionatlas.bsky.social · Mar 4
This week, our team will be attending the Spatial Transcriptomics & Proteomics event on March 5-6 at
@astrazeneca.bsky.social Discovery Centre !🧬
If you’re attending too, we’d love to connect, feel free to reach out to our team! #SpatialBiology #Proteomics #Networking
@ebi.embl.org
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expressionatlas.bsky.social
Expression Atlas @expressionatlas.bsky.social · Feb 28
Thank you to everyone who attended the ELIXIR Spatial Transcriptomics FAIR Data Management Workshop over the last two days, both @ebi.embl.org and online! The discussions on metadata & data standards, archiving, and data retrieval were productive and insightful.
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expressionatlas.bsky.social
Expression Atlas @expressionatlas.bsky.social · Feb 12
Our bioinformatics arm of the Functional Genomics Team and
Expression Atlas will participate in the @nf-co.re #hackathon at the Wellcome Genome Campus.

Check out our challenge and join us, everyone is welcome!

@ebi.embl.org @sangerinstitute.bsky.social @nextflow.io
#nextflow #singlecell
nf-co.re
nf-core @nf-co.re · Feb 3
Calling all bioinformatics enthusiasts! Join a global network of @nextflow.io ninjas for the @nf-co.re hackathon from March 24-26, 2025 🎉

Collaborate remotely or at one of the 36+ local sites worldwide (🇦🇷🇦🇺🇧🇪🇧🇷🇨🇦🇨🇴🇨🇿🇩🇰🇪🇹🇫🇷🇩🇪🇬🇭🇬🇷🇮🇳🇮🇹🇳🇱🇳🇿🇵🇰🇵🇱🇿🇦🇪🇸🇸🇪🇨🇭🇹🇷🇬🇧🇺🇸).

Registration is now open! 🎟

nf-co.re/events/2025/...
Hackathon - March 2025 (Online / Distributed)
A virtual hackathon with local sites to develop nf-core together
nf-co.re
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expressionatlas.bsky.social
Expression Atlas @expressionatlas.bsky.social · Feb 4
Excited to invite you to the Spatial Transcriptomics FAIR Data Management Workshop on Feb 26-27 at EMBL-EBI (hybrid)! Join us to discuss metadata & data standards, archiving, and data retrieval. Agenda & registration: tinyurl.com/spatial2025
Registration for SCO Spatial Data Meeting (26th Feb, 2025)
The SCO Spatial Data FAIR Meeting will take place on the 26th of February, 2025 at EMBL-EBI, UK. The event will take place from 12.00pm, 26th February to 1.30pm, 27th February, and will discuss metada...
tinyurl.com
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