Giulio Ragazzon
@giuliosflask.bsky.social
740 followers 440 following 12 posts
Here mostly a chemist. Interested in endergonic processes and other cool stuff. Group leader at the University of Strasbourg.
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giuliosflask.bsky.social
Shoutout to Kaiyuan, Federico, & Shaymaa (not on bsky), as well as a big thank you to our collaborators (@stefanborsley.bsky.social, @epenocchio.bsky.social, @claudiabonfio.bsky.social), and Job's team!
giuliosflask.bsky.social
I believe these works are also a nice example of how focusing on network properties (and specifically ratchet mechanisms, the principles underlying molecular machines) enables rather complex tasks using very simple molecules.
giuliosflask.bsky.social
A bit that I particularly like of our work: we did the key experiments guided by theory, which helped us to find conditions where small differences were amplified, and even revealed nonlinearities.
giuliosflask.bsky.social
The two works have the same root, but then explore different aspects: Boekhoven and coworkers realized selective transport, while we focused on kinetic aspects which enable pumping in the presence of a chemical fuel on either side of the barrier.
giuliosflask.bsky.social
Long story short, the works were treated largely independently: we found constructive editors and reviewers, but the randomness of peer review also appeared. For us it was a bit faster, so we waited to share the work more broadly, ideally returning the big favor they did initially by waiting for us.
giuliosflask.bsky.social
So, we coordinated: they were incredibly kind [thanks!🙌] to wait for us to write the manuscript and few [very intense] weeks later we uploaded to ChemRxiv both works, submitting then to the same peer reviewed journal.
giuliosflask.bsky.social
They had decided to write the work and had the manuscript basically ready, while we were still attempting transport through lipid membranes.
giuliosflask.bsky.social
Job & his team were incredibly open in discussing their findings. We had both achieved the key milestones, and both teams attempted transport through lipid membranes with little success.
giuliosflask.bsky.social
..first thing he mention upon arrival : they were also working on active transport! 😱
giuliosflask.bsky.social
Last fall I was invited by @boekhovenlab.bsky.social at TUM for a PhD defense: we had been using "their" carbodiimides to achieve active transport and was looking forward to discussing the systems with him, so I anticipated the topic shortly before arriving..
giuliosflask.bsky.social
Pumping molecules against a gradient without a pump?

Back-to-back with @boekhovenlab.bsky.social, we describe minimal systems that use chemical energy to transport molecules against a concentration gradient.

It started with a little shock!🧵

Us: shorturl.at/smQNF
Job's team: shorturl.at/zftps
Reposted by Giulio Ragazzon
iwonanieren.bsky.social
Les inscriptions aux “Journées de Chimie Supramoléculaire” JCS2025 sont maintenant ouvertes (gratuit mais obligatoire pour les étudiants, doctorants et post-doctorants) jcs2025.sciencesconf.org
Reposted by Giulio Ragazzon
profdaveleigh.bsky.social
Peng-Lai, @stefanborsley.bsky.social, Martin & our collaborators Alessandro and @giusepponelab.bsky.social demonstrate how a catalyst transduces chemical energy to perform mechanical work in www.nature.com/articles/s41... in @nature.com. tinyurl.com/jny7nen5. Animation @scicommstudios.bsky.social😀
Reposted by Giulio Ragazzon
epenocchio.bsky.social
If you've ever read about molecular motors, you've probably wondered about "power strokes." We looked into that by simulating a catalysis-driven molecular motor explicitly 🧐

I am super happy to share my latest work with Alex, Geyao, and Todd @nuchemistry.bsky.social

pubs.acs.org/doi/10.1021/...
Power Strokes in Molecular Motors: Predictive, Irrelevant, or Somewhere in Between?
For several decades, molecular motor directionality has been rationalized in terms of the free energy of molecular conformations visited before and after the motor takes a step, a so-called power stroke mechanism with analogues in macroscopic engines. Despite theoretical and experimental demonstrations of its flaws, the power stroke language is quite ingrained, and some communities still value power stroke intuition. By building a catalysis-driven motor into simulated numerical experiments, we here systematically report on how directionality responds when the motor is modified accordingly to power stroke intuition. We confirm that the power stroke mechanism generally does not predict motor directionality. Nevertheless, the simulations illustrate that the relative stability of molecular conformations should be included as a potential design element to adjust the motor directional bias. Though power strokes are formally unimportant for determining directionality, we show that practical attempts to alter a power stroke have side effects that can in fact alter the bias. The change in the bias can align with what power stroke intuition would have suggested, offering a potential explanation for why the flawed power stroke mechanism can retain apparent utility when engineering specific systems.
pubs.acs.org
Reposted by Giulio Ragazzon
chemistryviews.bsky.social
We are pleased to have 14 young European scientists visit us for the 3rd Chemistry Europe Early Career Researchers Meeting