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Estibaliz Gómez de Mariscal, PhD

@gomez-mariscal.bsky.social

170 followers 96 following 24 posts

Mathematician facing biomedical image processing challenges 💻🔬🧚‍♂️🦄 https://henriqueslab.org/pages/egdmariscal @embo.bsky.social fellow at @henriqueslab.bsky.social @aiopticalbiolab.bsky.social Former @arratemunoz.bsky.social @deniswirtz.bsky.social

henriqueslab.org

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Estibaliz Gómez de Mariscal, PhD @gomez-mariscal.bsky.social · Apr 10

🚨Alô #bsky and #microscopy community, we got #ReScale4DL, our new work in
@aiopticalbiolab.bsky.social
, out today!😍 🥳
We present the #imageresolutionparadox phenomenon for #DL-results 🤓
👇Check it out!!

Ricardo Henriques @henriqueslab.bsky.social · Apr 10

Why do lower-resolution images sometimes yield better results in deep learning for bioimaging analyses? 🤔📉

Mariana Ferreira's new preprint on #ReScale4DL explores this paradox and introduces optimal resolution design! @gomez-mariscal.bsky.social brainchild🧑‍🔬✨

Check: www.biorxiv.org/content/10.1...

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Estibaliz Gómez de Mariscal, PhD @gomez-mariscal.bsky.social · Aug 29

#SMLMS2025 has been an absolute pleasure🤩Not to mention the joy of learning about the cool techniques+advances happening in this vibrant community, and meeting some references in the field🥹Thank you very much to the organisers+ #ySMLMS's for the opportunity and the warm,stimulating+energetic event🌟

Heilemann Lab @heilemannlab.bsky.social · Aug 29

Estibaliz Gomez de Marisca @gomez-mariscal.bsky.social from Lisbon going live and sharing great work on AI-empowered microscopy #SMLMS2025 and accessible AI

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Reposted by Estibaliz Gómez de Mariscal, PhD

Elnaz @mycroscopy.bsky.social · Aug 29

Just out of the oven

onlinelibrary.wiley.com/doi/10.1111/...

I’m so excited! Stay tuned for more posts about it and give it a read when you can🥰

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Reposted by Estibaliz Gómez de Mariscal, PhD

Christoph Spahn @michriscopy.bsky.social · Aug 29

Great presentation of @gomez-mariscal.bsky.social. Covering PhotoFiTT, DL4MicEverywhere, resolution-matching and many other aspects of the FAIRy universe 💻🔬🧚‍♂️ #DeepLearning #Microscopy

Heilemann Lab @heilemannlab.bsky.social · Aug 29

Estibaliz Gomez de Marisca @gomez-mariscal.bsky.social from Lisbon going live and sharing great work on AI-empowered microscopy #SMLMS2025 and accessible AI

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Reposted by Estibaliz Gómez de Mariscal, PhD

Heilemann Lab @heilemannlab.bsky.social · Aug 29

Estibaliz Gomez de Marisca @gomez-mariscal.bsky.social from Lisbon going live and sharing great work on AI-empowered microscopy #SMLMS2025 and accessible AI

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Reposted by Estibaliz Gómez de Mariscal, PhD

Heilemann Lab @heilemannlab.bsky.social · Aug 27

Xavier Darzacq is our keynote speaker of today and takes us on an amazing journey through the cell nucleus with amazing single-molecule biology #SMLMS2025
www.tjian-darzacq.mcb.berkeley.edu

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Reposted by Estibaliz Gómez de Mariscal, PhD

Heilemann Lab @heilemannlab.bsky.social · Aug 27

We are kicking off #SMLMS2025 and are happy to welcome you all in Bonn! @smlm-symposium.bsky.social www.smlms.org

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Reposted by Estibaliz Gómez de Mariscal, PhD

Heilemann Lab @heilemannlab.bsky.social · Aug 28

Johannes Stein @jmstein.bsky.social from Harvard/Wyss reports impressive work on imaging the nuclear ultrastructure of cells using cryosections and DNA-PAINT #SMLMS2025

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Reposted by Estibaliz Gómez de Mariscal, PhD

Heilemann Lab @heilemannlab.bsky.social · Aug 28

Johannes Hohlbein @hohlbeinlab.bsky.social from Wageningen presenting his great work on the dynamics of the E. coli replication initiator DnaA #SMLMS2025

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Reposted by Estibaliz Gómez de Mariscal, PhD

Heilemann Lab @heilemannlab.bsky.social · Aug 28

We are so happy to have Zaida Luthey-Schulten here at #SMLMS2025 as a keynote speaker. Zaida is the Director of the NSF Science & Technology Center of Quantitative Cell Biology and Endowed Professor at UIUC. She pioneered 4D modelling of an entire cell integrating experimental data. So inspiring!

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Estibaliz Gómez de Mariscal, PhD @gomez-mariscal.bsky.social · Aug 5

Congratulations Rita!🙌 They're very lucky to have you and it's exciting news for biomedical engineering, looking forward to it🤩 wish you all the best in this new journey!

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Reposted by Estibaliz Gómez de Mariscal, PhD

FocalPlane @focalplane.bsky.social · Jul 30

This year’s pre-event symposium #youngSMLMS brings together ECRs in single-molecule microscopy: smlms.org/young-smlms/

youngSMLMS – SMLMS 2025

smlms.org

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Reposted by Estibaliz Gómez de Mariscal, PhD

FocalPlane @focalplane.bsky.social · Jul 30

⌚It’s the last couple of days to register for #SMLMS2025.

Check out @gomez-mariscal.bsky.social's report on last year’s pre-symposium AI4Life Workshop & Hackathon: focalplane.biologists.com/2025/07/22/b...

🤫Results from collaborations seeded at the workshop will be presented at #SMLMS2025 🤫

Bridging AI and Super-Resolution Microscopy: Highlights from the AI4Life Workshop & Hackathon at SMLMS 2024 - FocalPlane

Bridging AI and Super-Resolution Microscopy: Highlights from the AI4Life Workshop & Hackathon at SMLMS 2024 -

focalplane.biologists.com

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Estibaliz Gómez de Mariscal, PhD @gomez-mariscal.bsky.social · Jul 24

Thank you!

Estibaliz Gómez de Mariscal, PhD @gomez-mariscal.bsky.social · Jul 24

🚨Registration for @smlm-symposium.bsky.social is still open! If you're considering attending, this happened the year before at the pre-symposium with @ai4life.bsky.social 🌟 :
(spoiler: results from collaborations seeded there will be around at #SMLMS25👀🤩)
👉 focalplane.biologists.com/2025/07/22/b...

Bridging AI and Super-Resolution Microscopy: Highlights from the AI4Life Workshop & Hackathon at SMLMS 2024 - FocalPlane

Bridging AI and Super-Resolution Microscopy: Highlights from the AI4Life Workshop & Hackathon at SMLMS 2024 -

focalplane.biologists.com

Reposted by Estibaliz Gómez de Mariscal, PhD

AI4Life @ai4life.bsky.social · Jun 27

The 2nd AI4Life Challenge is live!
Calling the AI & bioimaging community to tackle a key microscopy challenge: removing noise while preserving detail.

📦 Paired noisy/clean datasets
📈 Ground-truth evaluation
🧠 DL focus

Build, test, compete 👉 ai4life.eurobioimaging.eu/challenge-2/

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Reposted by Estibaliz Gómez de Mariscal, PhD

Ricardo Henriques @henriqueslab.bsky.social · Jul 10

🚨Join us! We're soon opening 3 postdoctoral positions in #AIDrivenBiology. Seeking biologists (especially microbiology and infection biology), computer scientists, and microscopy developers. Ideal candidates are those eager to use or develop next-gen tech for cell biology. Get in touch (DM/email)

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Estibaliz Gómez de Mariscal, PhD @gomez-mariscal.bsky.social · Jul 10

Wondering how to make your DL-pipelines reproducible and shareable easily? #DL4MicEverywhere could be a nice way to go! 👩‍🏭
Now a full description and detailed step-by-step tutorial is publicly available thanks to #GTMAIIA seminars from
#RTMFM 🙏
👉 youtu.be/McOJEYZEHbQ?...

DL4MicEverywhere : deep learning for microscopy made flexible, shareable and reproducible

YouTube video by miti rtmfm

youtu.be

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Reposted by Estibaliz Gómez de Mariscal, PhD

AI-driven Optical Biology Lab @aiopticalbiolab.bsky.social · Jul 3

🧾New paper now on ‪‪‪‪Nature Protocols ‬🎉The #ExSRRF protocol gives you all details on how to merge Expansion Microscopy technique with #eSSRF analysis. Developed by Dominik Kylies, @puellesv.bsky.social and @hannah-superres.bsky.social, @henriqueslab.bsky.social

🔗: www.nature.com/articles/s41...

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Reposted by Estibaliz Gómez de Mariscal, PhD

Ricardo Henriques @henriqueslab.bsky.social · Jul 4

#RxivMaker updated to v1.1.0: now supports R auto-generated figures and lots of bug fixes

Details in: github.com/HenriquesLab...

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Reposted by Estibaliz Gómez de Mariscal, PhD

Hannah Heil @hannah-superres.bsky.social · Jul 3

This work was a true team effort 💪
👥 Dominik Kylies, @agvesga.bsky.social , @mariodelr.bsky.social, Maria Schwerk, @maltekuehl.com‬, Milagros N. Wong, @puellesv.bsky.social & @henriqueslab.bsky.social
Your creativity, precision, and persistence brought this to life. 🙌

a group of power rangers standing next to each other with the words `` super team '' above them .

ALT: a group of power rangers standing next to each other with the words `` super team '' above them .

media.tenor.com

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Reposted by Estibaliz Gómez de Mariscal, PhD

Hannah Heil @hannah-superres.bsky.social · Jul 3

🧐 How can I make sure my sample expands properly and how do I find the right eSRRF processing parameters?
Here you will find all the nitty-gritty details on #ExM sample preparation, 🔬 & #eSRRF processing 🏄, common pitfalls 🪨 and troubleshooting advice🛠️.

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Reposted by Estibaliz Gómez de Mariscal, PhD

Hannah Heil @hannah-superres.bsky.social · Jul 3

🚨 #ExM meets #eSRRF 🔬🏄🌊 the full protocol now in ‪@natprot.nature.com‬: doi.org/10.1038/s415...

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Reposted by Estibaliz Gómez de Mariscal, PhD

Hannah Heil @hannah-superres.bsky.social · Jul 4

🚨 Important detail in the #ExM & #eSRRF protocol: #eSRRF is not only available as plugin in #ImageJ /Fiji 🌴, #NanoPyx also brings it into the #python world 🐍: doi.org/10.1038/s415...
How to get started? Check out the training manual: doi.org/10.5281/zeno...

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Estibaliz Gómez de Mariscal, PhD @gomez-mariscal.bsky.social · Jul 8

Bravo @mariodelr.bsky.social and Raquel!!🙌🙌🥳