Lightnews — Scholar-powered news

Gregor Rot 🌈 @grexor.bsky.social · 1d

🚀 pubScan v2 is live!

What’s new:

📱 Mobile-friendly design
⚡ 5x faster thanks to our new SQLite backend
🛠️ Fully open source

Dive into your co-authorship network today:
🔗 pubscan.expressrna.org

Like it? Share and repost :-)
#pubscan #coauthorship #network #bioinformatics

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Reposted by Gregor Rot 🌈

The Francis Crick Institute @crick.ac.uk · 14d

NEW EPISODE: Can we cure cancer?

Join our expert panellists as they answer audience questions about the future of cancer research and treatment.

Listen on your favourite podcast platform:
lnk.to/AQOSCancerBB

Promotional image with the text 'Can We Cure Cancer?' showing four panellists on the left and a host speaking into a microphone on the right against a colourful background.

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Reposted by Gregor Rot 🌈

Anna Pascual Reguant @pascual-reguant.bsky.social · 23d

🚀 Spatial Transcriptomics (Imaging) + Spatial-centric analyses by @helucro.bsky.social : the way to truly interrogate tissues!!!
📖 Read our pre-print on human tonsil architecture (full of tonsiLove ♥️) here: doi.org/10.1101/2025...

A transcriptional map of human tonsil architecture: beyond the sum of (single cell) parts

The tonsil is a highly compartmentalized organ in which different microanatomical structures orchestrate designated (immune) functions. We use this already well-studied tissue to survey spatial molecu...

doi.org

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Gregor Rot 🌈 @grexor.bsky.social · 22d

A UN commission of inquiry concluded on Tuesday that Israel had committed genocide in Gaza and that top Israeli officials including the prime minister, Benjamin Netanyahu, had incited these acts.

www.theguardian.com/world/2025/s...

Israel has committed genocide in Gaza, says UN inquiry

Commission’s 72-page legal analysis cites examples including scale of killings, aid blockages and forced displacement

www.theguardian.com

Gregor Rot 🌈 @grexor.bsky.social · 25d

Universities around the world cut ties with Israeli academia over Gaza war

www.theguardian.com/world/2025/s...

Universities around the world cut ties with Israeli academia over Gaza war

Educational bodies from Europe to South America are boycotting Israeli institutions, though Universities UK said it did not support the action

www.theguardian.com

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Reposted by Gregor Rot 🌈

FMI science @fmiscience.bsky.social · 26d

📣The Turco group is seeking a computational biologist to analyze large omics datasets. Work on cutting-edge 3D organoid models of the human placenta and be embedded in our Computational Biology Platform (part of @sib.swiss). Apply here: www.fmi.ch/education-ca...

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Reposted by Gregor Rot 🌈

The Francis Crick Institute @crick.ac.uk · 26d

Want to enhance your image analysis skills with napari?

We’re running a two-day training event on how to use napari to effectively analyse your bioimaging data.

🕒 Applications close on 15 September.

Learn more and apply 👇

www.crick.ac.uk/whats-on/cbi...

CBIAS napari workshop 2025

www.crick.ac.uk

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Reposted by Gregor Rot 🌈

Javier Santoyo @jsantoyo.bsky.social · 26d

The power of RNA sequencing in molecular oncology. #RNAseq #MolecularOncology Genomics @natmed.nature.com 🧬
www.nature.com/articles/s41...

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Reposted by Gregor Rot 🌈

Javier Santoyo @jsantoyo.bsky.social · Sep 8

MoGAAAP: A modular Snakemake workflow for automated genome assembly and annotation with quality assessment. #GenomeAssembly #GenomeAnnotation #GenomeQuality #Genomics #Bioinformatics @biorxiv-bioinfo.bsky.social 🧬 🖥️
www.biorxiv.org/content/10.1...

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Gregor Rot 🌈 @grexor.bsky.social · Sep 5

Beautiful app.flow.bio #flowbio web-app and Nextflow backend, this is how web-dev should be done in life sciences, very nice!

Reposted by Gregor Rot 🌈

Javier Santoyo @jsantoyo.bsky.social · Sep 4

A spatial long-read approach at near-single-cell resolution reveals developmental regulation of splicing and polyadenylation sites in distinct cortical layers and cell types. #LongReads #SingleCell #Spatialtranscriptomics #IsoSeq #PolyA @natcomms.nature.com
www.nature.com/articles/s41...

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Gregor Rot 🌈 @grexor.bsky.social · Aug 23

Galimberti: La Bellezza

www.youtube.com/watch?v=I0cN...

Umberto Galimberti - La Bellezza. Legge segreta della vita - ASI CULTURA 26/07/2025 VILLAESTATE

YouTube video by Michele Cioffi

www.youtube.com

Reposted by Gregor Rot 🌈

Elisabetta Cacace @elisca.bsky.social · Aug 15

How diverse are E. coli capsules? How are they linked to ecology and disease? Find out with > 25,000 genomes and MAGs including undersampled environments and hosts from all over the world.
Great genomics - glycobiology synergy in Sunagawa and Slack groups at ETH!
www.biorxiv.org/content/10.1...
🧪🧫🔬

The natural diversity of E. coli transporter-dependent capsules

Serotyping of bacteria using genomic information ( in silico serotyping) has increasingly replaced serology. However, the E. coli capsule serotyping system has been largely abandoned since the 1990s, ...

www.biorxiv.org

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Reposted by Gregor Rot 🌈

Javier Santoyo @jsantoyo.bsky.social · Aug 10

Widespread 3′ UTR splicing regulates expression of oncogene transcripts through multiple mechanisms. #3UTRsplicing #TranscriptRegulation #Genomics @narjournal.bsky.social
academic.oup.com/nar/article/...

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Gregor Rot 🌈 @grexor.bsky.social · Jul 24

"my garden

in the sun and in the rain
and in the day and in the night

pain is a flower
pain is flowers

blooming all the time."

- Charles Bukowski

Gregor Rot 🌈 @grexor.bsky.social · Jul 18

Congrats everyone, such a tour de force!

"The MicrobeAtlas database: Global trends and insights into Earth's microbial ecosystems"

www.biorxiv.org/content/10.1...

The MicrobeAtlas database: Global trends and insights into Earth's microbial ecosystems

Environmental DNA sequencing has revolutionized our understanding of microbial diversity and ecology. Microbiomes have now been sequenced across the entire planet - from the deep subsurface to the mou...

www.biorxiv.org

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Gregor Rot 🌈 @grexor.bsky.social · Jul 18

Jure Leskovec

www.youtube.com/watch?v=UmE7...

Stanford, start-upi in moč podatkov (dr. Jure Leskovec) – AIDEA 187

YouTube video by Klemen Selakovic – AIDEA podkast

www.youtube.com

Gregor Rot 🌈 @grexor.bsky.social · Jul 6

#voltaire

Gregor Rot 🌈 @grexor.bsky.social · Jun 24

#charlesbukowski #weevolve

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Gregor Rot 🌈 @grexor.bsky.social · Jun 12

Incredible Galimberti, incredible. Amazing.

www.youtube.com/watch?v=UIcE...

LA VITA È INCERTA - #Galimberti (Conferenza 2024 "Ragione e Follia) #filosofia #crescitapersonale

YouTube video by Videoteca Umberto Galimberti

www.youtube.com

Gregor Rot 🌈 @grexor.bsky.social · Jun 5

Noam Chomsky

Gregor Rot 🌈 @grexor.bsky.social · Jun 4

Edmund, you live on! Thank you ❤️

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Gregor Rot 🌈 @grexor.bsky.social · Jun 4

Incredibly sad news today, about the passing of Edmund White, a legend. I was so looking forward to every new book you wrote, Edmund. Thank you for everything. Your works make me laugh and cry and you live on in your books.

www.theguardian.com/books/2025/j...

Edmund White, novelist and great chronicler of gay life, dies aged 85

The American essayist, playwrightauthor of books including A Boy’s Own Story and The Married Man has died

www.theguardian.com

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Gregor Rot 🌈 @grexor.bsky.social · May 30

Bukowski

Gregor Rot 🌈 @grexor.bsky.social · May 28

"Breakthrough Prize-Winning Biochemist on the Deadly Cost of Funding Cuts"

www.youtube.com/watch?v=8YhJ...

Breakthrough Prize-Winning Biochemist on the Deadly Cost of Funding Cuts | Amanpour and Company

YouTube video by Amanpour and Company

www.youtube.com