Josh Lambert
@jwlambert.bsky.social
Software Engineer @ LSHTM 👨🏼💻, ex evolutionary biologist 🐸🧬
Fun project with @evoisland.bsky.social, @theoevobio.bsky.social, Lizzie Roeble and Rampal Etienne from my @unigroningen.bsky.social PhD days, out now in MPE.
Using phylogenetic data for island biogeography analyses: The DAISIEprep package https://pubmed.ncbi.nlm.nih.gov/40068781/
March 17, 2025 at 4:57 PM
Fun project with @evoisland.bsky.social, @theoevobio.bsky.social, Lizzie Roeble and Rampal Etienne from my @unigroningen.bsky.social PhD days, out now in MPE.
Reposted by Josh Lambert
What should the early lines of code written during a new outbreak look like? We've got a new viewpoint piece in Lancet Digital Health on how to improve early outbreak analytics, with a great group of contributors: linkinghub.elsevier.com/retrieve/pii...
January 10, 2025 at 10:54 AM
What should the early lines of code written during a new outbreak look like? We've got a new viewpoint piece in Lancet Digital Health on how to improve early outbreak analytics, with a great group of contributors: linkinghub.elsevier.com/retrieve/pii...
Reposted by Josh Lambert
Want to easily simulate plausible outbreak data for tutorials or testing methods? {simulist} is now on CRAN! epiverse-trace.github.io/simulist/ind...
⏳ Delay distributions
🏥 Population-wide or age-stratified risks
📊 Age-structured populations
📈 Time-varying CFR
📋 Vary case types and contact tracing
⏳ Delay distributions
🏥 Population-wide or age-stratified risks
📊 Age-structured populations
📈 Time-varying CFR
📋 Vary case types and contact tracing
January 10, 2025 at 2:28 PM
Want to easily simulate plausible outbreak data for tutorials or testing methods? {simulist} is now on CRAN! epiverse-trace.github.io/simulist/ind...
⏳ Delay distributions
🏥 Population-wide or age-stratified risks
📊 Age-structured populations
📈 Time-varying CFR
📋 Vary case types and contact tracing
⏳ Delay distributions
🏥 Population-wide or age-stratified risks
📊 Age-structured populations
📈 Time-varying CFR
📋 Vary case types and contact tracing
Amazing couple of days visiting @naturalis.bsky.social with @evoisland.bsky.social! Working on open-source software for island biogeography.
December 24, 2024 at 11:26 AM
Amazing couple of days visiting @naturalis.bsky.social with @evoisland.bsky.social! Working on open-source software for island biogeography.
Reposted by Josh Lambert
Non-homogenic lineage diversification models are the way to go, and Tianjian is taking a first step towards more realistic diversification models like those. Great read!
www.sciencedirect.com/science/arti...
www.sciencedirect.com/science/arti...
Impact of evolutionary relatedness on species diversification and tree shape
Slowdowns in lineage accumulation are often observed in phylogenies of extant species. One explanation is the presence of ecological limits to diversi…
www.sciencedirect.com
November 21, 2024 at 12:30 AM
Non-homogenic lineage diversification models are the way to go, and Tianjian is taking a first step towards more realistic diversification models like those. Great read!
www.sciencedirect.com/science/arti...
www.sciencedirect.com/science/arti...
Reposted by Josh Lambert
Come do a PhD with us at @lshtm.bsky.social! We're advertising two projects:
Understanding and predicting vector-borne epidemics (with Rachel Lowe): mrc-lid.lshtm.ac.uk/2025-26-proj...
Kinetics of immunity to influenza and SARS-CoV-2 (with @dchodge.bsky.social): mrc-lid.lshtm.ac.uk/2025-26-proj...
Understanding and predicting vector-borne epidemics (with Rachel Lowe): mrc-lid.lshtm.ac.uk/2025-26-proj...
Kinetics of immunity to influenza and SARS-CoV-2 (with @dchodge.bsky.social): mrc-lid.lshtm.ac.uk/2025-26-proj...
November 21, 2024 at 10:08 AM
Come do a PhD with us at @lshtm.bsky.social! We're advertising two projects:
Understanding and predicting vector-borne epidemics (with Rachel Lowe): mrc-lid.lshtm.ac.uk/2025-26-proj...
Kinetics of immunity to influenza and SARS-CoV-2 (with @dchodge.bsky.social): mrc-lid.lshtm.ac.uk/2025-26-proj...
Understanding and predicting vector-borne epidemics (with Rachel Lowe): mrc-lid.lshtm.ac.uk/2025-26-proj...
Kinetics of immunity to influenza and SARS-CoV-2 (with @dchodge.bsky.social): mrc-lid.lshtm.ac.uk/2025-26-proj...