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lankylaste.bsky.social
Stefania Marcotti
@lankylaste.bsky.social
920 followers 540 following 12 posts
Data and image analysis for all things bio | Computational tinkerer | Researcher | Bioimage analyst
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lankylaste.bsky.social
Stefania Marcotti @lankylaste.bsky.social · Dec 18
New paper out! We share our experiences from conducting #bioimageanalysis workshops, using open-source software and building a community around training: doi.org/10.1002/jemt...

Thanks to the dream team of rockstars, @david-j-barry.bsky.social, @martinjones.bsky.social and Tom Slater
Enhancing Research Through Image Analysis Workshops: Experiences and Best Practices
This graphical abstract illustrates the structure of interactive image analysis workshops, where participants engage in hands-on learning with open-source tools under expert guidance to improve resea...
doi.org
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Reposted by Stefania Marcotti
bethcimini.bsky.social
Beth Cimini 🔬💻📊 @bethcimini.bsky.social · 15d
Halfway to I2K is BACK, friends of all kinds! Last year, 650 people attended 30+ TOTALLY FREE image analysis workshops of all kinds, across many timezones.

If you make image analysis software and want to teach it, workshop submissions are open now! We'd love to have your tool highlighted.
bioimagingna.bsky.social
BioImaging North America @bioimagingna.bsky.social · 19d
#HappyFluorescenceFriday!

#microscopycommunity- want to learn open source image analysis or share your knowledge to help others? We’ve got a FREE virtual workshop Nov 17-19! Now accepting workshop session applications!

Learn more & sign up: buff.ly/esGIotD
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Reposted by Stefania Marcotti
david-j-barry.bsky.social
Dave Barry @david-j-barry.bsky.social · 15d
The provisional program for The 6th Crick Bioimage Analysis Symposium (#CBIAS2025) is live!

Join us at the @wellcomecollection.bsky.social in London in November for incredible talks, posters and insightful discussions.

Space is limited - register now!
www.crick.ac.uk/whats-on/cri...
Provisional Program for day 1 of the Crick BioImage Analysis Symposium 2025 Provisional Program for day 2 of the Crick BioImage Analysis Symposium 2025
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Reposted by Stefania Marcotti
cbias.bsky.social
Crick BioImage Analysis Symposium @cbias.bsky.social · 15d
The program for the #CBIAS2025 is now live – space is limited, so register now to secure your spot! 24th-25th Nov, Wellcome Trust, London (UK) - see you there!

🔗⬇️
www.crick.ac.uk/whats-on/cri...
CBIAS2025 flier, showing the conference logo, listing the topics, confirmed speakers and sponsors. On the top right corner, a QR code is available to access the registration page.
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Reposted by Stefania Marcotti
danishbioimaging.bsky.social
Danish BioImaging @danishbioimaging.bsky.social · Aug 22
The Danish BioImaging Infrastructure is hiring!
We are looking for a highly motivated and independent Image Analysis Application Specialist with a strong bioimage analysis background and drive to collaborate in multidisciplinary environments
More information
candidate.hr-manager.net/ApplicationI...
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Reposted by Stefania Marcotti
david-j-barry.bsky.social
Dave Barry @david-j-barry.bsky.social · Aug 29
Today we say farewell to Alicja Skórkowska, who returns to @jagiellonskiuni.bsky.social after a very productive 6 month stay with us. Alicja will be missed!

However, we also welcome @lankylaste.bsky.social, who is now officially a @crick.ac.uk person!
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Reposted by Stefania Marcotti
cbias.bsky.social
Crick BioImage Analysis Symposium @cbias.bsky.social · Aug 28
Last few days to submit an abstract for #CBIAS2025 (deadline 31/08)!

We invite submissions on all topics related to #bioimageanalysis, from new software tools to discoveries made using existing methods. Early career researchers are especially encouraged to submit!

www.crick.ac.uk/whats-on/cri...
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lankylaste.bsky.social
Stefania Marcotti @lankylaste.bsky.social · Aug 27
Applications close at the end of the week!
lankylaste.bsky.social
Stefania Marcotti @lankylaste.bsky.social · Aug 6
Ready to automate your #microscopy #imageanalysis tasks? Applications are now open for our next "Introduction to Image Analysis" training course, in London at the @crick.ac.uk on October 27th-28th, 2025! 🔬💻

More info ⬇️
www.crick.ac.uk/whats-on/int...
Introduction to image analysis
www.crick.ac.uk
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Reposted by Stefania Marcotti
cbias.bsky.social
Crick BioImage Analysis Symposium @cbias.bsky.social · Aug 27
Last but not least for our #CBIAS2025 guest speaker line-up is Ilaria Testa, fellow at @scilifelab.se. Ilaria and team develop and apply novel super resolution microscopy approaches to understand fundamental biological processes relevant for health and disease

🔗👇
www.scilifelab.se/researchers/...
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Reposted by Stefania Marcotti
cbias.bsky.social
Crick BioImage Analysis Symposium @cbias.bsky.social · Aug 26
We continue the #CBIAS2025 speaker intros with @jytinevez.bsky.social, research engineer and core facility manager at the Institut Pasteur. Jean-Yves is one of the minds behind TrackMate and is part of F-BIAS, a federation of bioimage analysts across France

🔗👇
research.pasteur.fr/fr/member/je...
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Reposted by Stefania Marcotti
cbias.bsky.social
Crick BioImage Analysis Symposium @cbias.bsky.social · Aug 25
Next guest speaker at #CBIAS2025 is Christa Walther, community manager for @globias.bsky.social‬. GloBIAS is a worldwide association that brings together all those interested in #bioimageanalysis, offering opportunities for knowledge exchange, events, training, and resources.

🔗👇
www.globias.org
Home
News Next BIA seminar series: "Behind the Scenes at SciLifeLab BIIF: Lessons from Managing a National Bioimage Analysis Support Unit" by Anna Klemm on 27th of August, 2pm CEST GloBIAS held its inaugu...
www.globias.org
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Reposted by Stefania Marcotti
cbias.bsky.social
Crick BioImage Analysis Symposium @cbias.bsky.social · Aug 24
At #CBIAS2025 we will also hear from Ewa Paluch from @cam.ac.uk. Ewa and their team take an interdisciplinary approach combining biology, imaging, mechanical testing and physical modelling to investigate the basic principles underlying animal cell morphogenesis

🔗👇
www.pdn.cam.ac.uk/directory/ew...
Professor Ewa K Paluch | Department of Physiology, Development and Neuroscience
www.pdn.cam.ac.uk
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Reposted by Stefania Marcotti
virginieuhlmann.bsky.social
Virginie Uhlmann @virginieuhlmann.bsky.social · Aug 25
Once is an exception, twice is a trend, thrice is a tradition!

Save the date for our now-traditional annual OME-NGFF extravaganza in Zurich!

Whether you’ve just heard about OME-NGFF and are curious to learn more or if you are working with it every day, there is something for everyone this year!
joelluethi.bsky.social
Joel Lüthi @joelluethi.bsky.social · Aug 25
We're happy to announce the 2025 International OME-NGFF workshop 🎉

📅 Dates:
- Symposium: Nov 10–11, 2025
- Hackathon: Nov 12–14, 2025

📍 Location: Zurich, Switzerland

Full details & registration: www.biovisioncenter.uzh.ch/en/events/Up... 

#bioimaging #openscience #OMENGFF #OMEZarr

(1/x 🧵)
Visual of segmented human induced pluripotent stem cells with the key workshop dates: Symposium on November 10-11, Hackathon on November 12-14th in Zurich Switzerland
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Reposted by Stefania Marcotti
cbias.bsky.social
Crick BioImage Analysis Symposium @cbias.bsky.social · Aug 23
We continue the #CBIAS2025 speaker line-up with Dominik Kutra, senior research software engineer in the @ilastik-team.bsky.social. Dominik is one of the core developers of Ilastik, a user-friendly software that leverages machine learning algorithms to easily analyse bioimages

🔗👇
www.ilastik.org
ilastik - ilastik
www.ilastik.org
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Reposted by Stefania Marcotti
cbias.bsky.social
Crick BioImage Analysis Symposium @cbias.bsky.social · Aug 22
Next up at #CBIAS2025 is @helenajambor.bsky.social‬ from the University of Applied Sciences of the Grisons. Helena researches data visualisation in the life sciences, combining their expertise with large datasets and their interest in data communication

🔗👇
helenajamborwrites.netlify.app/about
HelenaJamborWrites - About
helenajamborwrites.netlify.app
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Reposted by Stefania Marcotti
cbias.bsky.social
Crick BioImage Analysis Symposium @cbias.bsky.social · Aug 21
Our first #CBIAS2025 invited speaker is Andrew French from @uniofnottingham.bsky.social‬, who specialises in using AI to understand images. Their research interests include image analysis of plants and complex structures and image capture automation

🔗👇
www.nottingham.ac.uk/biosciences/...
People - The University of Nottingham
www.nottingham.ac.uk
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Reposted by Stefania Marcotti
david-j-barry.bsky.social
Dave Barry @david-j-barry.bsky.social · Aug 20
ONLY 11 MORE DAYS TO SUBMIT AN ABSTRACT FOR #CBIAS2025!!!
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Reposted by Stefania Marcotti
cbias.bsky.social
Crick BioImage Analysis Symposium @cbias.bsky.social · Aug 11
📢 After #CBIAS2025, join our hands-on 2-day napari training by @crick.ac.uk @ucl.ac.uk @liverpooluni.bsky.social
From conda to plugins to Jupyter, practicals on real data with expert guidance.
For Python/ImageJ coders. Apply by 1 Sept – limited to 30! crick.ac.uk/whats-on/cbias-napari-workshop-2025
CBIAS napari workshop 2025
crick.ac.uk
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Reposted by Stefania Marcotti
cbias.bsky.social
Crick BioImage Analysis Symposium @cbias.bsky.social · Aug 8
Abstract submission #CBIAS2025 is closing on August 31st - we invite submissions on all topics related to #bioimageanalysis: new tools, biological discoveries using existing methods, and anything in between. Early-career researchers especially encouraged to submit!

www.crick.ac.uk/whats-on/cri...
Crick BioImage Analysis Symposium 2025
www.crick.ac.uk
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lankylaste.bsky.social
Stefania Marcotti @lankylaste.bsky.social · Aug 6
With the ✨dream team✨ in strict alphabetical order: @david-j-barry.bsky.social, @martinjones.bsky.social, @k-meech.bsky.social, Sara Salgueiro Torres, and Cameron Shand
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lankylaste.bsky.social
Stefania Marcotti @lankylaste.bsky.social · Aug 6
Ready to automate your #microscopy #imageanalysis tasks? Applications are now open for our next "Introduction to Image Analysis" training course, in London at the @crick.ac.uk on October 27th-28th, 2025! 🔬💻

More info ⬇️
www.crick.ac.uk/whats-on/int...
Introduction to image analysis
www.crick.ac.uk
1 8 13
Reposted by Stefania Marcotti
cbias.bsky.social
Crick BioImage Analysis Symposium @cbias.bsky.social · Jul 10
Special early bird rate registrations for #CBIAS2025 are closing soon, on July 20th! Register early to get your discounted ticket for this year's edition, happening at the Wellcome Trust in London on November 24th and 25th

www.crick.ac.uk/whats-on/cri...
Crick BioImage Analysis Symposium 2025
www.crick.ac.uk
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lankylaste.bsky.social
Stefania Marcotti @lankylaste.bsky.social · Jun 26
Abstract submission for the Crick BioImage Analysis Symposium #CBIAS2025 is now open until August 31st!

If you are interested in bioimage analysis, whether as a user or methods developer, join us in London on November 24th-25th - we look forward to seeing you there!

www.crick.ac.uk/whats-on/cri...
Crick BioImage Analysis Symposium 2025
www.crick.ac.uk
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Reposted by Stefania Marcotti
dgaboriau.bsky.social
David Gaboriau @dgaboriau.bsky.social · Jun 13
A great day of thinking about teaching bioimage analysis and designing courses at the #TrainTheTrainerBIA2025
@martinjones.bsky.social @makaefer.bsky.social @lankylaste.bsky.social
@giuliapaci.bsky.social
A well deserved fresh drink!
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Reposted by Stefania Marcotti
bioimaginguk.bsky.social
BioImagingUK @bioimaginguk.bsky.social · May 30
🔬𝐔𝐊 𝐄𝐮𝐫𝐨-𝐁𝐢𝐨𝐈𝐦𝐚𝐠𝐢𝐧𝐠 𝐍𝐨𝐝𝐞 𝐬𝐞𝐜𝐮𝐫𝐞𝐬 £𝟏.𝟖𝐌 from @ukri.org

This will:
-Democratise access to cutting-edge biological and biomedical imaging
-Support 200+ researchers yearly
-Boost open science

Thanks to BBSRC and MRC for this major upgrade! 🚀

Congrats to the entire UK Node team 👏

Link in replies⬇️
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Reposted by Stefania Marcotti
napari.fosstodon.org.ap.brid.gy
napari @napari.fosstodon.org.ap.brid.gy · May 28
Ok guys **nobody open any more issues** 😂
A cropped screenshot of the napari github repo. The issues tab shows 999 open issues.
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