Lightnews — Scholar-powered news

Laurent Guerard @lguerard.bsky.social · Jul 8

Day 2 of #Zidas2025 is happening!

After a lecture from @ahklemm.bsky.social, it's now time for hands on with @ilastik-team.bsky.social by @benediktbest.bsky.social from Anna Kreshuk's lab and some tracking in the afternoon with #Trackmate from @jytinevez.bsky.social !

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Laurent Guerard @lguerard.bsky.social · Jul 7

And we're ON!

#Zidas2025 has officially started at the @biozentrum.unibas.ch, and the first day is introduction to image formation by Arne Seitz, Fiji by Joana Delgado Martins and Fiji scripting by me !

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Laurent Guerard @lguerard.bsky.social · Jul 6

Obra Dinn is a very nice choice indeed!

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Laurent Guerard @lguerard.bsky.social · Jul 4

I couldn't find a napari plug-in to open all file formats using Bioio. So I made one : pypi.org/project/napa...

Feel free to use it and suggest improvements 🎉

Client Challenge

pypi.org

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Reposted by Laurent Guerard

Simon F. Nørrelykke @simonfn.bsky.social · Mar 24

This summer, we are running a one-week intensive workshop on Python-based BioImage Analysis.
Are there better ways to spend 6 days in mid-July in Boston?Probably.
Would you learn as much as you will here? Probably not.

Apply here:
iac.hms.harvard.edu/bobiac/2025

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Laurent Guerard @lguerard.bsky.social · Jan 30

My gf got a paper published discussing about evolution of a fish and got approached by creationists that didn't get the conclusion 🙃

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Laurent Guerard @lguerard.bsky.social · Jan 30

🎉🎉

Jean-Yves Tinevez @jytinevez.bsky.social · Jan 30

We just released and uploaded a new version of *Mastodon*, the large-scale tracking and track-editing framework for large, multi-view images.

Mastodon is available via Fiji, via a dedicated update site.
mastodon.readthedocs.io/en/latest/do...

Below is a thread that survey some of the novelties ⏬️

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Laurent Guerard @lguerard.bsky.social · Jan 30

Applications are now open!

Laurent Guerard @lguerard.bsky.social · Jan 14

2025 is now well underway and we are happy to announce that ZIDAS is coming to Basel this year !
2025.zidas.org

ZIDAS 2025

This one-week school provides a hands-on introduction to image processing and analysis, with an emphasis on biologically relevant examples.

2025.zidas.org

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Laurent Guerard @lguerard.bsky.social · Jan 15

Yup, at least for Vscode. It requires an account but otherwise free and learns from your own code base, which is nice.

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Laurent Guerard @lguerard.bsky.social · Jan 14

?

an airplane is taking off from a runway with a red light on the tail

Alt: an airplane is taking off from a runway with a red light on the tail

media.tenor.com

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Laurent Guerard @lguerard.bsky.social · Jan 14

🤩

Nicolas Chiaruttini @nkiaru.bsky.social · Jan 11

Finally had a bit of time to play with multi-GPU deconvolution. Using @truenorth-ia.bsky.social and @haesleinhuepf.bsky.social previous work.

Here it is in action in #BigDataViewer using async and lazy processing. Look at the two poor laptop GPUs going as fast as they can:

Reposted by Laurent Guerard

Nicolas Chiaruttini @nkiaru.bsky.social · Jan 11

Finally had a bit of time to play with multi-GPU deconvolution. Using @truenorth-ia.bsky.social and @haesleinhuepf.bsky.social previous work.

Here it is in action in #BigDataViewer using async and lazy processing. Look at the two poor laptop GPUs going as fast as they can:

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Laurent Guerard @lguerard.bsky.social · Jan 14

Depends for what I guess, I'm using Codeium for coding, using the free version and I'm quite happy with it so far.

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Laurent Guerard @lguerard.bsky.social · Jan 14

If you're interested, check out 2025.zidas.org for more information, news about registration and our tentative program!
#ZIDAS2025

ZIDAS 2025

This one-week school provides a hands-on introduction to image processing and analysis, with an emphasis on biologically relevant examples.

2025.zidas.org

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Laurent Guerard @lguerard.bsky.social · Jan 14

📅 Important dates:
Course will run from July 6th (Yes, Sunday!) to July 11th 2025.
Registration opens at the end of January until 2025-03-16.
You will be informed of your participation on 2025-04-07.

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Laurent Guerard @lguerard.bsky.social · Jan 14

As is our signature, programming knowledge is not required 💻, but an eagerness to learn is welcome! What is important is your biological question and a motivating cover letter to get your application noticed!

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Laurent Guerard @lguerard.bsky.social · Jan 14

Hands-on sessions will be dedicated to well-established open source tools ⚙📚 with an emphasis on creating reproducible workflows.

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Laurent Guerard @lguerard.bsky.social · Jan 14

25 candidates will join our amazing group of instructors locally sourced (through SwissBIAS, and across Europe), and tool developers in order to work with modern bioimage analysis tools🏃‍♂️🏃‍♂️🏃‍♂️

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Laurent Guerard @lguerard.bsky.social · Jan 14

After last year's ZIDAS success, we are thrilled to open the doors of the Uni Basel to a fresh new batch of candidates.

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Laurent Guerard @lguerard.bsky.social · Jan 14

2025 is now well underway and we are happy to announce that ZIDAS is coming to Basel this year !
2025.zidas.org

ZIDAS 2025

This one-week school provides a hands-on introduction to image processing and analysis, with an emphasis on biologically relevant examples.

2025.zidas.org

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Reposted by Laurent Guerard

Biozentrum, University of Basel @biozentrum.unibas.ch · Dec 13

Entry-level position (80 - 100%) for bioimage analysis specialist at the Imaging Core Facility (IMCF) of the Biozentrum, University of Basel

www.biozentrum.unibas.ch/open-positio...

@unibas.ch #Biozentrum #Basel #research #science #joboffer #scientific

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Laurent Guerard @lguerard.bsky.social · Dec 13

Come join us if you do image analysis!

Oliver Biehlmaier @biehli.bsky.social · Dec 13

🌟We are looking for a new member of our image analysis team at the Imaging Core Facility of the Biozentrum in Basel 🌟
Are you passionate about science and technology? Are you interested in bioimaging? Please check the job ad below
#JobOpportunity #ImageAnalysis #DeepLearning
@biozentrum.bsky.social

Biozentrum, University of Basel @biozentrum.unibas.ch · Dec 13

Entry-level position (80 - 100%) for bioimage analysis specialist at the Imaging Core Facility (IMCF) of the Biozentrum, University of Basel

www.biozentrum.unibas.ch/open-positio...

@unibas.ch #Biozentrum #Basel #research #science #joboffer #scientific

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Reposted by Laurent Guerard

Hadas Weiss @hadas.bsky.social · Dec 12

sorry about that, i asked it to make sense of my life choices

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Laurent Guerard @lguerard.bsky.social · Dec 12

If you're scared of IA taking over your job, we probably still have a few years ahead of us 😁

Peter Labuza @labuzamovies.com · Dec 11

here's a Sora generated video of gymnastics

Laurent Guerard @lguerard.bsky.social · Dec 7

Ah yes thanks, sorry, I saw my name too late 😅