Lightnews — Scholar-powered news

Reposted by Simon F. Nørrelykke

Ignacio Arganda-Carreras @iarganda.bsky.social · 8d

📣 We’re hiring, please RT! Fully funded 4-year PhD position in our CVPD group at @informatikaehu.bsky.social!

Research at the intersection of AI, deep learning & bioimage analysis. 🧠🔬

📅 Applications open Oct 6 (deadline: ~Oct 27)
📍 San Sebastian, Spain.
👉 cvpd.github.io/post/2025-09...

📢 Open 4-year PhD Position in Deep Learning for Bioimage Analysis! | CVPD Research group

The Computer Vision and Pattern Discovery (CVPD) group at the University of the Basque Country (UPV/EHU) is offering a fully funded 4-year PhD position within the recently awarded project TOSBI: Towar...

cvpd.github.io

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Wolfgang Huber @wkhuber.bsky.social · 9d

Do you like theoretical biology, mathematical&conceptual modelling and want to apply yourself to cutting-edge research at all levels of biology, from molecules to ecosystems?

Come to EMBL! Scope includes physics-based models, emergence, statistics, ML/AI
embl.wd103.myworkdayjobs.com/en-US/EMBL/j...

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Florian Jug @florianjug.bsky.social · 26d

🚨 Wow, that really sounds like an amazing opportunity… If I were a bit younger, I would start preparing my application already… 😮

www.scilifelab.se/news/ready-t...

Ready to shape the future of AI in life science?

The next call for DDLS Fellows is opening soon, offering an outstanding opportunity for ambitious young researchers to establish their own internationally competitive research groups. This round has a...

www.scilifelab.se

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Guillaume Jacquemet @guijacquemet.bsky.social · 28d

Come and work with us 5-year position available for a University Researcher in Bioimaging 1.11.2025-31.12.2030

abo.rekrytointi.com/paikat/index...

University Researcher in Bioimaging / Universitetsforskare med inriktning bioimaging, 1.11.2025-31.12.2030

abo.rekrytointi.com

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Eva de la Serna @sciencedoodles.bsky.social · Jul 29

Check out our amazing #bobiac2025 cohort! Was a joy to teach this group! Thanks @bioimagingna.bsky.social for generously supporting this 6 week bioimage analysis w/Python course!

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Reposted by Simon F. Nørrelykke

HMS Image Analysis Collaboratory @hms-iac.bsky.social · Jul 14

Day 1 of #bobiac2025 🐍

The day started strong with @talley.codes speaking about the Python ecosystem and uv. Students then gave short talks about their research (#coolscience). It was then time to code in Python with @sciencedoodles.bsky.social!

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Simon F. Nørrelykke @simonfn.bsky.social · Jul 14

Thank you Guillaume!

Simon F. Nørrelykke @simonfn.bsky.social · Jul 14

First day of #bobiac2025. Six days of intensive Python based #BioImageAnalysis. Intro by @fedegasparoli.bsky.social
- "This will be a long week, but it will change your life".

iac.hms.harvard.edu/bobiac/2025/

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Sten Linnarsson @sten.linnarsson.org · Jun 25

A major KI initiative to recruit new assistant professors with outstanding proposals in all areas of medicine, biomedicine and public health. We offer an amazing research environment, great colleagues and generous startup packages. Check it out and get working on your applications! (repost please!)

Karolinska Institutet @ki.se · Jun 25

Applications are now open! We are recruiting 20 Assistant Professors in a wide range of subject areas. We're looking for early-career researchers with strong scientific merits and future potential.
🔗 All positions: ki.se/en/about-ki/...

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Guillaume Jacquemet @guijacquemet.bsky.social · Jun 23

Are you looking for a postdoc?
I will be looking for 2-4 people after the summer to join the lab !!
Do not hesitate to reach out and disseminate !!

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Florian Jug @florianjug.bsky.social · Jun 9

Come and work with us!
Super exciting and relevant projects!
Become an #AI pro and do something positive for the 🌍!
👩‍🎓 🧑‍🎓
If you know someone who might be interested… please repost and/or forward this! 🙏

Human Technopole @humantechnopole.bsky.social · Jun 9

🚀 Fully-funded #PhD opportunity in Computational Biology with our @florianjug.bsky.social Group through Politecnico of Milan DADS programme! Co-supervision by Francesca Ieva.

🧬 Use #AI to decode complex biological data across scales.

Apply by 9 July 👉 humantechnopole.it/en/news/1-fu...

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HMS Image Analysis Collaboratory @hms-iac.bsky.social · May 30

‼️3 days left to apply to the Boston Bioimage Analysis Course (BoBiAC)! 💻

Get started w/Python & learn to analyze fluorescence microscopy images — no programming experience required!

Fee waivers available!

🗓️ Apply by June 1st!
🌐 iac.hms.harvard.edu/bobiac/2025/

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GloBIAS @globias.bsky.social · May 15

Deadlines extended - you can still register for the GloBIAS conference! We have extended most deadlines. Please check our webpage: tinyurl.com/mr3kx5a5! Looking forward to welcoming you to Kobe, for training, developing and discussing a broad range of BIA topics!

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Simon F. Nørrelykke @simonfn.bsky.social · May 8

Thanks to generous support from @bioimagingna.bsky.social
we now have even more fee-waivers for our workshop.

No funds, but want to learn? Apply below.

HMS Image Analysis Collaboratory @hms-iac.bsky.social · May 8

💻 Apply to our beginner-friendly Boston Bioimage Analysis Course!

Get started with Python and learn to analyze fluorescence microscopy images — no coding experience required!

Fee waivers available thanks to funding from @bioimagingna.bsky.social!

🗓️ Apply June 1st!
iac.hms.harvard.edu/bobiac/2025/

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Reposted by Simon F. Nørrelykke

Beth Cimini 🔬💻📊 @bethcimini.bsky.social · May 1

BIG NEWS - for the first time ever, we're running a Bioimage Analysis Beginnings Bootcamp. Learn #bioimageanalysis from awesome folks, and gain familiarity with some new tools as well as how to pick the right tool in the first place. Aug 4th-8th - apply here (soon!) forms.gle/d2fCXsrWHVP8...

Ad for the Bioimage Analysis Beginnings Bootcamp at the Broad Institute.

Where & When
Broad Institute, 415 Main Street, Cambridge MA (in-person only)
Monday–Friday, August 4–8, 20259:00 AM – 5:00 PM

About the Bootcamp
Learn core bioimage analysis skills using open-source tools for light
microscopy in this hands-on, in-person course. The Bootcamp
covers annotation, segmentation, and deep learning fundamentals.

Fee: $600 (Academic/Non-Profit) | $1000 (Industry/For-Profit)
For more information email ImagingAdmin@broadinstitute.org

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HMS Image Analysis Collaboratory @hms-iac.bsky.social · Apr 22

‼BREAKING‼
We’ve secured new funding for the Boston Bioimage Analysis Course (BoBiAC) this July at Harvard Med School! Course fees down 37%, with fee waivers for academic applicants, for an intensive hands-on intro to bioimage analysis with Python!

Apply by June 1st!
iac.hms.harvard.edu/bobiac/2025

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Simon F. Nørrelykke @simonfn.bsky.social · Apr 15

Please join in-person if you are nearby, or by Zoom if not.

HMS Image Analysis Collaboratory @hms-iac.bsky.social · Apr 14

✨We are proudly hosting 𝐏𝐫𝐨𝐟. 𝐒𝐢𝐱𝐢𝐚𝐧 𝐘𝐨𝐮 (MIT)✨

“𝐂𝐨𝐦𝐩𝐮𝐭𝐚𝐭𝐢𝐨𝐧𝐚𝐥 𝐚𝐱𝐢𝐚𝐥 𝐝𝐞𝐛𝐥𝐮𝐫𝐫𝐢𝐧𝐠 𝐟𝐨𝐫 𝐢𝐬𝐨𝐭𝐫𝐨𝐩𝐢𝐜 𝟑𝐃 𝐦𝐢𝐜𝐫𝐨𝐬𝐜𝐨𝐩𝐲”

𝐀𝐩𝐫𝐢𝐥 𝟐𝟒𝐭𝐡 @ 𝟏𝟏 𝐚𝐦 𝐄𝐃𝐓 (𝐁𝐨𝐬𝐭𝐨𝐧 𝐭𝐢𝐦𝐞, 𝐔𝐒𝐀)

Join us on Zoom!

harvard.zoom.us/j/9307790905...

$Abstract: Three-dimensional subcellular imaging is often hampered by diffraction limits in thick, heterogeneous tissues and invalid assumptions about data distribution and imaging systems. We introduce SSAI-3D, a weakly physics-informed, domain-shift-resistant framework that robustly achieves isotropic 3D imaging. Demonstrations in various label-free samples, plus validation on publicly available 3D datasets with unknown blurring and noise, confirm its potential for more accurate subcellular analysis.$

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Reposted by Simon F. Nørrelykke

Marco Dalla Vecchia @marcodv.bsky.social · Apr 9

In the past 2 days, we had the great pleasure to host an in-person workshop at @istaresearch.bsky.social with the collaboration of @globias.bsky.social, @carpentries.carpentries.org and @istaustria-iof.bsky.social.

We wanted to create a go-to course for image analysis in Python. Info in the thread!

GloBIAS and Data Carpentry members group picture

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Reposted by Simon F. Nørrelykke

Rita Strack @ritastrack.bsky.social · Apr 10

Your yearly reminder to acknowledge the core facilities you use and their staff scientists in your papers. These scientists are a crucial part of the scientific ecosystem and to continue to exist they need tangible credit for their work. Plus their associated expertise adds credibility to your work.

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Joanna Pylvänäinen @jwpylvanainen.bsky.social · Apr 8

We wrote an opinion with simple, practical advice for building data exploration workflows in quantitative cell biology with @guijacquemet.bsky.social and @hanna09.bsky.social . I hope you find it useful!

Guillaume Jacquemet @guijacquemet.bsky.social · Apr 7

Here we share our opinions on "Practical considerations for data exploration in quantitative cell biology"
journals.biologists.com/jcs/article/...

Joanna, Hanna and I worked quite a bit on this piece and I hope you find it useful
Many thanks to @jcellsci.bsky.social for publishing it

Practical considerations for data exploration in quantitative cell biology

Summary: We present practical guidelines for data exploration in quantitative cell biology that are designed to help yield reliable conclusions and promote a collaborative, transparent approach to dat...

journals.biologists.com

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Reposted by Simon F. Nørrelykke

Beth Cimini 🔬💻📊 @bethcimini.bsky.social · Apr 7

Delighted to announce that @erinweisbart.bsky.social and I have teamed up to create a new bioimage analysis video podcast called Ask Erin/Dear Beth - you can check it out at the link below! It will highlight common challenges in #bioimageanalysis, as well as our favorite solutions to them. (1/x)

Ask Erin, Dear Beth

On Ask Erin/Dear Beth, bioimage analysis experts Beth Cimini and Erin Weisbart, of the Imaging Platform at the Broad Institute of MIT and Harvard, answer your image analysis questions! Whether it’s ab...

www.youtube.com

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Simon F. Nørrelykke @simonfn.bsky.social · Apr 8

www.globias.org/activities/u...

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GloBIAS @globias.bsky.social · Apr 8

Another in-person event from #GloBIAS Together with #Data Carpentry. Thanks to the GloBIAS volunteers at ISTA for organising and hosting us! #BioImageAnalysis #Python

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Jean-Yves Tinevez @jytinevez.bsky.social · Mar 31

Preprint (update) alert!

F-BIAS: Towards a distributed national core facility for Bioimage Analysis. (arxiv.org/abs/2409.15009)

0/ In this paper we discuss our experience in federating ourselves and delivering bioimage analysis services to the scientific community in France.

👇 a short thread

F-BIAS: Towards a distributed national core facility for Bioimage Analysis.

arxiv.org

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Reposted by Simon F. Nørrelykke

Florian Jug @florianjug.bsky.social · Mar 28

Now that looks like a great new course to check out!
More python 🐍 heavy than other courses I know… which is great to have! 👍
Check it out, sign up, learn!!! 🤩

HMS Image Analysis Collaboratory @hms-iac.bsky.social · Mar 24

💻 Announcing the Boston Bioimage Analysis Course — BoBiAC!
Join us this July at Harvard Medical School in Boston for a 6-day deep dive into bioimage analysis with Python, hosted by the IAC and CITE.
Apply by May 16th, 2025!

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