Hanjin Liu
liu-hanjin.bsky.social
Hanjin Liu
@liu-hanjin.bsky.social
PhD in biophysics. Interested in microtubule dynamics and MAPs. Cryo-ET, fluorescence microscopy and programming. (he/him).
ORCID: 0009-0006-5724-8121
github: https://github.com/hanjinliu
Reposted by Hanjin Liu
Structural Basis of Human Kinetochore-Microtubule Coupling by the Ndc80 and Ska Complexes https://www.biorxiv.org/content/10.64898/2025.12.06.692780v1
December 7, 2025 at 11:46 PM
Our latest work is out in biorxiv! 😊

We show that human spastin, a microtubule severing enzyme, behaves completely differently in presence of free tubulin - it forms tubulin ring stack and promotes de novo microtubule nucleation.

www.biorxiv.org/content/10.1...
Human spastin functions as an ATPase-independent microtubule nucleator via ring-stack formation
Microtubule severing enzyme spastin plays pivotal roles in cytokinesis and neuronal outgrowth, and its mutations cause hereditary spastic paraplegia (HSP). Here we show that, at physiological tubulin ...
www.biorxiv.org
December 1, 2025 at 8:20 AM
Reposted by Hanjin Liu
At some point, Doppio will replace relion's gui. Already you can do more in Doppio than in relion! 🤩
November 4, 2025 at 6:14 PM
Reposted by Hanjin Liu
Excited to share our new preprint in collaboration with Ahmet Yildiz's lab. Check out how our team uncovers a novel binding footprint and motor regulation mechanism for MAP9 Congrats to Burak Cetin and @aryantaheri.bsky.social

www.biorxiv.org/content/10.1...
November 18, 2025 at 10:43 PM
Reposted by Hanjin Liu
Are you ready for a symposium dedicated to microtubule dynamics, function, and structure? 🙌

#EESMicrotubules will bring together researchers who share an interest in microtubule biology and its relevance to health and disease 🩺

💻 s.embl.org/ees26-09-bl
✒️ Submit your abstract by 11 March
September 11, 2025 at 2:13 PM
Reposted by Hanjin Liu
New preprint from the lab - the first paper made (almost) entirely here @qmul.bsky.social

We report how human outer kinetochore complexes Ndc80 and Ska form cooperative oligomers, that together stabilise microtubule ends against shortening.
www.biorxiv.org/content/10.1...

Key results below: (1/7)
Microtubule end stabilisation by cooperative oligomers of Ska and Ndc80 complexes
During mitosis, properly aligned chromosomes stabilise microtubule ends with the help of kinetochores to ensure timely segregation of chromosomes. Microtubule-binding components of the human outer kinetochore, such as Ndc80 and Ska complexes, are present in multiple copies and together bind several microtubule ends, creating a highly multivalent binding interface. Whereas Ndc80:Ndc80 and Ndc80:microtubule binding is crucial for interface stability, Ndc80 alone in absence of Ska is unable to support stable kinetochore-attachments. Using cryoET, we demonstrate that oligomeric Ndc80:Ska assemblies stabilise microtubule ends against shortening by strengthening lateral contacts between tubulin protofilaments at microtubule plus-ends. We further identify a point mutation within the SKA1 microtubule-binding domain that does not affect microtubule-binding of individual Ska molecules, but does abolish Ska:Ska interactions. Finally, we report that oligomerisation of Ska, in a cooperative fashion together with the Ndc80, is necessary to maintain stable microtubule attachments both in vivo and in vitro. ### Competing Interest Statement The authors have declared no competing interest. BBSRC, BB/X014975/1, BB/W019698/1 Wellcome Trust, https://ror.org/029chgv08, 308895/Z/23/Z
www.biorxiv.org
July 7, 2025 at 9:39 AM
Reposted by Hanjin Liu
Finally out in Nature Chem Bio:
SNAP-tag2 for faster and brighter protein labeling
www.nature.com/articles/s41...
Thank you Steffi and Veselin.
SNAP-tag2 for faster and brighter protein labeling - Nature Chemical Biology
SNAP-tag is a widespread tool for labeling protein for bioimaging. Now, Kühn et al. report SNAP-tag2 with increased labeling kinetics and brightness, which translates into a better performance in live...
www.nature.com
July 3, 2025 at 7:45 PM
Reposted by Hanjin Liu
Spotiflow, our deep learning based spot detection method for microscopy, is now published in @natmethods.nature.com!
Since the pre-print, we have added many features, notably native 3D detection!
@maweigert.bsky.social @gioelelamanno.bsky.social @epfl-brainmind.bsky.social
Paper: rdcu.be/epIB7
(1/N)
Spotiflow: accurate and efficient spot detection for fluorescence microscopy with deep stereographic flow regression
Nature Methods - Spotiflow uses deep learning for subpixel-accurate spot detection in diverse 2D and 3D images. The improved accuracy offered by Spotiflow enables improved biological insights in...
rdcu.be
June 6, 2025 at 6:58 PM
Reposted by Hanjin Liu
Excited to share our latest work in @pnas.org! Combining simulations and cryo-ET, we reveal how microtubules decide between growth and shortening. doi.org/10.1073/pnas... @maksimkalutskii.bsky.social @vladimirvolkov.bsky.social @compbiophys.bsky.social @mpi-nat.bsky.social @qmul.ac.uk @dundee.ac.uk.
June 3, 2025 at 9:08 AM
Reposted by Hanjin Liu
Cryogenic light microscopy of vitrified samples with Angstrom precision https://www.biorxiv.org/content/10.1101/2025.05.27.656160v1
May 27, 2025 at 11:48 AM
Reposted by Hanjin Liu
New release: napari-omero 0.5.0 😀@openmicroscopy.org @napari.org thanks to some big contributions from @psobolewskiphd.bsky.social , @will-j-moore.bsky.social and of course @talley.codes. Some features in spotlight 👇

First: napari-omero now supports lazy loading of image pyramids from OMERO🔺:
May 12, 2025 at 11:16 AM
Reposted by Hanjin Liu
Enhanced axonal transport in large vertebrates: KIF5A adaptations in giraffes and pythons https://www.biorxiv.org/content/10.1101/2025.05.04.652084v1
May 5, 2025 at 7:47 AM
Reposted by Hanjin Liu
This time-lapse captures 17 hours of axonal growth from a chicken dorsal root ganglion explant, visualized through the actin cytoskeleton using live confocal imaging.
I just submitted this video to the Nikon Small World in Motion competition. Today is the last day to upload yours! 😉
🧪
April 30, 2025 at 7:16 AM
shortest title
May 2, 2025 at 11:58 AM
Reposted by Hanjin Liu
And it's finally here! napari 0.6.0 is out on PyPI and conda-forge! 🥳 We've had a few threads about this release already but let's recap with some highlights: 🧵
a woman in a hat is crying and says " i 've traveled a good many miles to get here "
Alt: Charlotte from the Sanditon TV series, emotionally exclaiming, "I've traveled a good many miles to get here!"
media.tenor.com
May 1, 2025 at 2:08 PM
Reposted by Hanjin Liu
napari 0.6.0rc0 is out! Barring any crazy bugs 🐛, 🙏 napari 0.6.0 should be out in a week, Apr 30.
doctor strange says we 're in the endgame now in a movie scene
Alt: Doctor Strange says "we're in the endgame now" in a scene from Avengers: Infinity War
media.tenor.com
April 23, 2025 at 3:21 PM
Reposted by Hanjin Liu
Excited to share our preprint on the molecular architecture of heterochromatin in human cells 🧬🔬w/ @jpkreysing.bsky.social, @johannesbetz.bsky.social,
@marinalusic.bsky.social, Turoňová lab, @hummerlab.bsky.social @becklab.bsky.social @mpibp.bsky.social

🔗 Preprint here tinyurl.com/3a74uanv
April 11, 2025 at 8:35 AM
Reposted by Hanjin Liu
Thanks to Hanjin Liu, napari now has a command palette! 🎨 This thing is really nice to use — the core team can no longer live without it — and it even works with plugin commands! 🤩
April 11, 2025 at 10:36 AM
Reposted by Hanjin Liu
It's taking us some time but it's gonna be worth the wait we promise! 😅 napari 0.6.0a1 is out now! You can install it with `pip install "napari>=0.6.0a1"`. The full release notes are here:

https://napari.org/0.6.0/release/release_0_6_0.html

But to save you a click here's a short thread: 👇
napari 0.6.0 — napari
napari.org
April 11, 2025 at 10:33 AM
Reposted by Hanjin Liu
#CryoSPARC v4.7 is out! 🚀 
Featuring a new automatic Micrograph Junk Detector that labels and rejects contaminants, new tools for curating subsets of particles, performance and stability fixes, and more!
Full changelog: cryosparc.com/updates

#cryoEM
April 9, 2025 at 2:14 PM
3D manual picking tool along microtubules
March 23, 2025 at 6:27 AM
Finally rust-numpy fully supported puthon 3.13+!!

github.com/PyO3/rust-nu...
GitHub - PyO3/rust-numpy: PyO3-based Rust bindings of the NumPy C-API
PyO3-based Rust bindings of the NumPy C-API. Contribute to PyO3/rust-numpy development by creating an account on GitHub.
github.com
March 14, 2025 at 12:11 AM
Reposted by Hanjin Liu
openRxiv has arrived!

We’re thrilled to announce the launch of openRxiv as an independent, researcher-led nonprofit to oversee bioRxiv and medRxiv, the world’s leading preprint servers for life and health sciences.
openrxiv.org/introducing-...

#openRxiv #OpenScience #Preprints #bioRxiv #medRxiv
March 11, 2025 at 1:18 PM
Reposted by Hanjin Liu
Customizable large-scale #OpenSource #HPLC #FractionCollector using low-cost #3Dprinting:

- based on #Creality #Ender3Pro
- cost < US $280
- prep scale fractions: up to 470 mL
- #Python, #GUI, no-code

doi.org/10.1016/j.oh...
#DIYbio #lab #instruments #LC #fluidics #chemistry #DrugDiscovery
March 3, 2025 at 11:42 AM
Reposted by Hanjin Liu
Wow, this is big: "Fiji can now be launched in a Python-first mode, where first Python is started, then Fiji is started via the PyImageJ library. In this mode, Fiji is fully integrated with the active Python environment"
forum.image.sc/t/fiji-2024-...
Fiji 2024 Year in Review: Milestones and Roadmap
Introduction The Fiji team at LOCI is pleased to share significant progress on several major initiatives as we work towards raising the technological standards of Fiji. These include Fiji 2.16.0, feat...
forum.image.sc
March 1, 2025 at 12:01 PM