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mesoSPIM: Clear Images. Big samples. Open source. @mesospim.bsky.social · Aug 27

Both are experienced clinical pathologists who are master users of #mesoSPIM and developed their own way of staining and clearing the most challenging tissues in their clinical practice. Want to learn which method will work best with your samples? Join us at #mesoSPIM2025 t.uzh.ch/1Ss
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Registration

t.uzh.ch

mesoSPIM: Clear Images. Big samples. Open source. @mesospim.bsky.social · Aug 27

Our invited speakers Dr. Anna Maria Reuss and Dr. Hei Ming Lai show astonishing results in this field with their new methods, #aDISCO and #INSIHGT, respectively, at the #mesoSPIM2025 symposium.
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mesoSPIM: Clear Images. Big samples. Open source. @mesospim.bsky.social · Aug 27

Is it possible to stain specific proteins and cell types in old formalin-fixed human tissues and make them transparent for light-sheet imaging and clinical 3D diagnostics?

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Image presenting two of the speakers for the 10 Years of mesoSPIM symposium. Background of the image is a microscopy picture showing blood vessels in magenta and glial cells in cyan on a black field. On the top left, the photo of the first speaker is contained in a white-rimmed circle. On the top right the text reads: "Hei Ming Lai, The Chinese University of Hong Kong, HK" followed by the talk title "Customizing mesoSPIM-based workflows for clinical 3D tissue Diagnostics". On the lower part of the image, the second speaker is presented in a specular manner. On the lower left, text reads “Anna Maria Reuss, University Hospital, Zurich, Switzerland”, followed by the talk title “aDISCO - A Broadly Applicable Method for 3D Microscopy of Archival Paraffin-Embedded Human Tissues”. On the lower left, the photo of the second speaker is contained in a white-rimmed circle. On the bottom right it reads “10 Years of mesoSPIM Symposium”

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mesoSPIM: Clear Images. Big samples. Open source. @mesospim.bsky.social · Aug 22

Final program of the 10-year #mesoSPIM2025 Anniversary Symposium, October 13-15 in Zurich! Amazing lineup of speakers: biologists, physicists, developers, computer scientists and industry experts! Join us to learn, present, and connect! Registration until Sept. 15. www.adabd.uzh.ch/en/events/me...

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mesoSPIM: Clear Images. Big samples. Open source. @mesospim.bsky.social · Aug 22

📣We have opened our official User Forum: forum.image.sc/tag/mesospim
In this forum you can connect with 🔬developers and the image analysis experts. Ask your burning questions about the #mesoSPIM hardware, software, and image processing, or help the beginners to get started!
Tip: use project tags!

Topics tagged mesospim

forum.image.sc

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mesoSPIM: Clear Images. Big samples. Open source. @mesospim.bsky.social · Aug 20

Join us in Zurich or online: t.uzh.ch/1Ss

Registration

t.uzh.ch

mesoSPIM: Clear Images. Big samples. Open source. @mesospim.bsky.social · Aug 20

How to image across scales from organs to synapses, unravel biological mechanisms and handle massive data?
Learn more from @adamkglaser.bsky.social, senior scientist at the Allen Institute and the lead developer of #ExA-SPIM technique, at the #mesoSPIM2025 Symposium, Oct 13-15.

Image presenting one of the speakers for the 10 Years of mesoSPIM symposium. Background of the image is a microscopy picture showing blood vessels in magenta and glial cells in cyan on a black field. On the left, the photo of the speaker is contained in a white-rimmed circle. On the right the text reads: "Adam Glaser, Allen Institute, WA, USA" followed by the talk title "New technologies for mapping centimeter scale tissues with nanoscale resolution". On the bottom right it reads “10 Years of mesoSPIM Symposium”

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mesoSPIM: Clear Images. Big samples. Open source. @mesospim.bsky.social · Aug 18

💥How can light-sheet help reveal dark matter?💥
Join Prof. Laura Baudis @lbaudis.bsky.social at #mesoSPIM Symposium, Oct 13–15 in Zurich or online, to see how light-sheet fluorescence microscopy 🔬 is used to image nuclear ☢️ recoil tracks to detect elusive particles!
Register now: t.uzh.ch/1Ss

mage presenting one of the speakers for the 10 Years of mesoSPIM symposium. Background of the image is a microscopy picture showing blood vessels in magenta and glial cells in cyan on a black field. On the left, the photo of the speaker is contained in a white-rimmed circle, on the right text reads: "Laura Baudis, University of Zurich, Switzerland" followed by the talk title "Probing dark matter and neutrinos with light sheet microscopy". On the bottom right reads "10 Years of mesoSPIM Symposium”

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mesoSPIM: Clear Images. Big samples. Open source. @mesospim.bsky.social · Aug 13

What a pleasure to image such samples 🥰

Reposted by mesoSPIM: Clear Images. Big samples. Open source.

voigtvision.bsky.social @voigtvision.bsky.social · Aug 13

#Deeplearning-based #CRISPR DNA integration and editing by Thomas Naert & Sören Lienkamp & Co with lots of @mesospim.bsky.social #lightsheet #Microscopy data of tadpoles (and some taken with the #Schmidt #multiimmersion objective prototype!) 🔬🐸 www.nature.com/articles/s41...

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mesoSPIM: Clear Images. Big samples. Open source. @mesospim.bsky.social · Aug 12

We’re excited to welcome @kevin-dean.bsky.social to the #mesoSPIM2025 Symposium! Explore his innovations in Multiscale Cleared-Tissue Axially Swept Light-Sheet Microscopy for imaging from organ to subcellular levels.
🗺️Oct 13–15 | Zurich & hybrid
Interested? Register now: t.uzh.ch/1Ss

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mesoSPIM: Clear Images. Big samples. Open source. @mesospim.bsky.social · Jul 14

Abstract Submission Deadline: TOMORROW, July 15-th 🎇

mesoSPIM: Clear Images. Big samples. Open source. @mesospim.bsky.social · Jul 3

🎉 Call for Abstracts! 🎉
Abstract deadline approaching! 10 years of #mesoSPIM initiative – join us at the symposium for talks, demos & posters on microscopy, tissue clearing, and data analysis!
📆 October 13-15, 2025
🗺️ Zurich, Switzerland, but also online.
www.adabd.uzh.ch/en/events/me...

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mesoSPIM: Clear Images. Big samples. Open source. @mesospim.bsky.social · Jul 3

🎉 Call for Abstracts! 🎉
Abstract deadline approaching! 10 years of #mesoSPIM initiative – join us at the symposium for talks, demos & posters on microscopy, tissue clearing, and data analysis!
📆 October 13-15, 2025
🗺️ Zurich, Switzerland, but also online.
www.adabd.uzh.ch/en/events/me...

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mesoSPIM: Clear Images. Big samples. Open source. @mesospim.bsky.social · Jun 12

Speakers include @voigtvision.bsky.social @adamkglaser.bsky.social @christellelangevin.bsky.social @preibischs.bsky.social @jsdaniel02.bsky.social @nvladimus.bsky.social and many others! Poster design by @mgarbelli.bsky.social, cover image by Anna Maria Reuss.

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mesoSPIM: Clear Images. Big samples. Open source. @mesospim.bsky.social · Jun 12

Highlights:
🗣️ Keynotes & lightning talks
👩‍🔬 Maker Day for microscope builders
🤝 Meet devs, users & industry
Join us to shape the future of open-source microscopy!
#mesoSPIM2025 #openscience

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mesoSPIM: Clear Images. Big samples. Open source. @mesospim.bsky.social · Jun 12

Submit your work in any of these areas:
🧠 Bio/Neuro/Phys imaging
🧼 Tissue clearing techniques
🖥️ Image analysis tools (open or commercial)
🔧 Hardware and software (open or commercial)
Talks, posters & demos welcome!
Abstract submission: ema.uzh.ch/R7YRN

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mesoSPIM: Clear Images. Big samples. Open source. @mesospim.bsky.social · Jun 12

🎉 Call for Abstracts! 🎉
We’re celebrating 10 years of #mesoSPIM #opensource initiative – join us at the symposium for talks, demos & posters on open-source light-sheet microscopy, tissue clearing, and imaging!
Dates: October 13-15, 2025
Location: Zurich, Switzerland
Registration: ema.uzh.ch/R7YRN

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mesoSPIM: Clear Images. Big samples. Open source. @mesospim.bsky.social · Jun 10

Happy imaging!

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Reposted by mesoSPIM: Clear Images. Big samples. Open source.

ierp-inrae.bsky.social @ierp-inrae.bsky.social · Jun 10

🔬 On June 6, we inaugurated the first #MesoSPIM in France at INRAE Jouy-en-Josas & ENS Paris-Saclay! A big thanks to @nvladimus.bsky.social , @mgarbelli.bsky.social ,Angeliki Vavladeli & all speakers and sponsors. Exciting step forward for #opensource imaging & interdisciplinary science! #microscopy

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mesoSPIM: Clear Images. Big samples. Open source. @mesospim.bsky.social · Jun 7

Did you know that Universite Paris Saclay has its own Benchtop #mesoSPIM? Interdisciplinary team lead by @christellelangevin.bsky.social has built their own setup, the first in France, and organized an inauguration symposium! Cleared baby sturgeon or trout? They have it! French bioimaging is strong!

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Reposted by mesoSPIM: Clear Images. Big samples. Open source.

Jason Kirk 🔬📷 @jasonmileskirk.bsky.social · Jun 3

New chamber mount design for our @mesospim.bsky.social - magnetic kinematic bases from @thorlabs.bsky.social for the win! 3D printed (for now) bases hold the chamber snugly for precise positioning between experiments. Fill port on the front allows for media addition without disturbing imaging.

Stainless Imaging chamber for mesoSPIM with 3D printed kinematic mounts

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Reposted by mesoSPIM: Clear Images. Big samples. Open source.

voigtvision.bsky.social @voigtvision.bsky.social · May 16

Looking forward to the @mesospim.bsky.social #lightsheet #Microscopy anniversary symposium in October with @preibischs.bsky.social @adamkglaser.bsky.social @christellelangevin.bsky.social & many more! And to the next mesoSPIM decade! 🔬 Thanks @nvladimus.bsky.social & Co for organizing it!

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mesoSPIM: Clear Images. Big samples. Open source. @mesospim.bsky.social · May 27

We are looking forward to your visit! And thanks for being our sponsor!

Reposted by mesoSPIM: Clear Images. Big samples. Open source.

Jon Daniels @jsdaniel02.bsky.social · May 15

I'm excited to be able to be in Zurich for the mesoSPIM symposium. This is a really fantastic project.

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Reposted by mesoSPIM: Clear Images. Big samples. Open source.

voigtvision.bsky.social @voigtvision.bsky.social · May 27

The culmination of years of hard work by Anna Maria Reuss & Co: aDISCO - a protocol for clearing & antibody-staining human formalin-fixed paraffin-embedded (FFPE) tissue! With lots of @mesospim.bsky.social #lightsheet #Microscopy @ptrrupprecht.bsky.social & many more!
www.biorxiv.org/content/10.1...

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