Reid Oshiro
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rtoshiro.bsky.social
Reid Oshiro
@rtoshiro.bsky.social
PostDoc; Seed lab, UC Berkeley | PhD, Microbiology; Kearns lab, IU Biology | Love microbiology and baking! HI ➡️ IN ➡️ CA | he/him 🏳️‍🌈
Reposted by Reid Oshiro
Durham University (@durham.ac.uk) and NEB scientists described the first biochemical characterization of GmrSD Type IV restriction enzyme substrate specificity and inhibition by phage protein IP1*. https://royalsocietypublishing.org/doi/10.1098/rstb.2024.0072
Modified DNA substrate selectivity by GmrSD-family Type IV restriction enzyme BrxU
Abstract. Bacteriophages (phages), viral predators of bacteria, generate selection pressure that causes bacteria to evolve defence systems. Type I, II and
royalsocietypublishing.org
December 15, 2025 at 5:50 PM
Reposted by Reid Oshiro
Fer’s tour de force in B. anthracis is out! Fer got Tn-seq running, built an ordered knockout library, defined all essential sporulation genes, and found a peptidoglycan deacetylase inhibitor critical for engulfment. Including our first one-by-all Alphafold screen! journals.plos.org/plosbiology/...
Identification of sporulation genes in Bacillus anthracis highlights similarities and significant differences with Bacillus subtilis
How good is Bacillus subtilis as a model for the spore-forming pathogen Bacillus anthracis? Using high throughput genetics to identify B. anthracis sporulation genes and cytological analysis of the mu...
journals.plos.org
December 13, 2025 at 4:53 PM
Reposted by Reid Oshiro
Just got word that we are a go for the Bacterial Cell Biology and Development GRS and GRC at Southern New Hampshire University!

GRS will be on June 5-6, 2027

GRC will be from June 6-11, 2027

Block off your calendars Prokaryotic Cell Biologists!

More details to come! Please repost!
December 12, 2025 at 2:58 PM
Reposted by Reid Oshiro
Phages are full of genes of unknown function that are likely adaptive in specific conditions.
New preprint: Phage TnSeq identifies essential genes rapidly and knocks all non-essentials. We would like to send a pool of phiKZ mutants to anyone wanting it! Reach out
tinyurl.com/bdcfrejh
December 8, 2025 at 3:04 PM
Reposted by Reid Oshiro
I’m happy to share our new preprint! We uncovered the full diversity of bacterial TIR-based antiviral immune signaling, massively expanded the known diversity of Thoeris systems, and revealed conservation of TIR-derived immune signals across the tree of life.

www.biorxiv.org/content/10.6...
Systematic discovery of TIR-based immune signaling systems in bacteria
Toll/interleukin-1 receptor (TIR) domains are important for immune signaling across humans, plants and bacteria. These domains were recently found to produce immune signaling molecules in plant immuni...
www.biorxiv.org
December 4, 2025 at 9:25 AM
Reposted by Reid Oshiro
📢 We have multiple open PhD positions to study bacterial immune systems using cutting-edge cryo-EM, microbiology, and biochemistry in our group! Join us and uncover how bacterial defenses eliminate predators and engineer next-gen biotech tools.

🔥 Apply by Jan 8, 2026

Details: phd.pages.ista.ac.at
phd.pages.ista.ac.at
December 2, 2025 at 8:44 AM
Reposted by Reid Oshiro
Check this out for the 2026 SISB (phage defense) meeting in NYC. Mark your calendar! (and note the Zoom option, if needed)
sisb2026.rockefeller.edu
SISB2026
sisb2026.rockefeller.edu
December 1, 2025 at 11:44 PM
Reposted by Reid Oshiro
Spatial constraint drives negative frequency dependent selection of phage weaponization https://www.biorxiv.org/content/10.1101/2025.11.26.690769v1
November 27, 2025 at 2:16 AM
Reposted by Reid Oshiro
Hot off the press! Our latest paper led by @fernpizza.bsky.social, understanding how plasmids evolve inside cells. These small, self-replicating DNA circles live inside bacteria and carry antibiotic resistance genes, but also compete with one another to replicate. 1/
www.science.org/doi/10.1126/...
Intracellular competition shapes plasmid population dynamics
From populations of multicellular organisms to selfish genetic elements, conflicts between levels of biological organization are central to evolution. Plasmids are extrachromosomal, self-replicating g...
www.science.org
November 20, 2025 at 9:42 PM
Reposted by Reid Oshiro
🚨Preprint alert - this is a big one! We transfer the revolutionary power of TnSeq to bacteriophages.

Our HIDEN-SEQ links the "dark matter" genes of your favorite phage to any selectable phenotype, guiding the path from fun observations to molecular mechanisms.

A thread 1/8
November 20, 2025 at 8:40 PM
I’m excited to share my recent postdoc work. Here, we interrogate how different phage infection outcomes (productive vs. restrictive) affect the expression of phage defense systems. We find that a restricted infection not only inhibits the phage but also induces increased immune protein abundance.
Surviving phage attack dynamically regulates bacterial immunity to defeat counterdefenses https://www.biorxiv.org/content/10.1101/2025.11.13.688357v1
November 15, 2025 at 6:10 PM
Reposted by Reid Oshiro
Join the Blokesch lab (@EPFL) as a postdoc in Molecular Microbiology 🤩
Study Vibrio cholerae defense systems (phage/plasmid) in a dynamic, collaborative environment in Lausanne close to Lake Geneva in 🇨🇭!
Please visit my lab's webpage for details about the position and how to formally apply.
April 25, 2025 at 4:15 PM
Reposted by Reid Oshiro
Since we have had a big boom to bsky let me reintroduce myself.

I am Aisha Burton and a new PI at Cornell Micro. Currently on maternity leave but my two research techs are keeping the research going 🙏🏾. My lab is interested in studying small proteins and how they impact stress responses in bacteria
November 12, 2024 at 10:38 PM
Really excited to share my first preprint as a postdoc! Here, we determined that the BREX-inhibitor, OrbA, encoded by the lytic phage ICP1 inhibits BREX through the ATPase BrxC in V. cholerae.

www.biorxiv.org/content/10.1...
The vibriophage-encoded inhibitor OrbA abrogates BREX-mediated defense through the ATPase BrxC
bioRxiv - the preprint server for biology, operated by Cold Spring Harbor Laboratory, a research and educational institution
www.biorxiv.org
May 10, 2024 at 5:30 PM
Attention phage/microbiology 🧫🦠enthusiasts- the Seed lab kimseedlab.com @UCBerkeley is hiring a staff research associate, an ideal opportunity for folks looking to gain research experience before grad school/professional school careerspub.universityofcalifornia.edu/psp/ucb/EMPLOY… please share!
Seed Lab
Kim Seed is an Assistant Professor at the University of California, Berkeley and her lab studies the interactions between bacteria and their viral predators (bacteriophages), and how these interacti...
kimseedlab.com
November 9, 2023 at 6:21 PM
Yay @aishaburton.bsky.social glad to see this out!
The alternative sigma factor SigN of Bacillus subtilis is intrinsically toxic

J Bacteriology by Aisha Burton et al from Dan Kearns lab
with Libor Krásný lab

journals.asm.org/doi/10.1128/...
September 21, 2023 at 6:05 PM