Susie Grigson
@susiegriggo.bsky.social
290 followers 190 following 17 posts
PhD Student @ Flinders University | #bioinformatics #phage #microbiome 🦠💻🧬 | she/her https://github.com/susiegriggo
Posts Media Videos Starter Packs
Reposted by Susie Grigson
oschwengers.bsky.social
Isolates or MAGs, we're looking for the worst-annotated genomes, i.e. high fraction of CDS w/o any functional annotation. Any public/shareable bacterial genome is highly welcome!

Please help us to further improve the annotation of bacterial genomes.

Please RT & share

(2/2)
Reposted by Susie Grigson
oschwengers.bsky.social
Dear community, Bakta needs your help!

To further improve the functional annotation of "hypothetical" CDS, me and @gbouras13.bsky.social, we are looking for the worst Bakta-annotated bacterial genomes ;-)

(1/2)
Reposted by Susie Grigson
adelaideprotein.bsky.social
Our quiz night is happening TONIGHT! Remember to get your tickets through the link and we'll see you there!😁
adelaideprotein.bsky.social
💡The APG Quiz Night is back for 2025!💡

Join us on the 3rd of October at The University of Adelaide for a night of trivia, laughs, pizzas, and drinks! 🍕🍺

🎟️Tickets: $5 (ASBMB members FREE entry + chance to win the door prize!)

⚡Only 100 spots available – register now! bit.ly/4p2KSlp
APG Quiz Night 2025
Register on Humanitix - APG Quiz Night 2025. The University of Adelaide, Ingkarni Wardli, Room B18, The University of Adelaide, Ingkarni Wardli, Adelaide SA 5000, Australia. Friday 3rd October 2025. F...
bit.ly
Reposted by Susie Grigson
Reposted by Susie Grigson
Reposted by Susie Grigson
Reposted by Susie Grigson
soreklab.bsky.social
Preprint: De-novo design of proteins that inhibit bacterial defenses

Our approach allows silencing defense systems of choice. We show how this approach enables programming of “untransformable” bacteria, and how it can enhance phage therapy applications

Congrats Jeremy Garb!
tinyurl.com/Syttt
🧵
Synthetically designed anti-defense proteins overcome barriers to bacterial transformation and phage infection
Bacterial defense systems present considerable barriers to both phage infection and plasmid transformation. These systems target mobile genetic elements, limiting the efficacy of bacteriophage-based t...
www.biorxiv.org
Reposted by Susie Grigson
linsalrob.bsky.social
Three postdoc positions are now open for applications! Live and work on Kaurna land (Adelaide) in sunny South Australia. We have beach views, wineries, kangaroos, and koalas.

Develop new synthetic biology to engineer and understand #phage, and computational tools for #phage and #microbiome analysis
Reposted by Susie Grigson
Reposted by Susie Grigson
proteinmechanic.bsky.social
Third Era of Phylogenetics!

1️⃣ Era 1: Morphology 🦴
2️⃣ Era 2: Sequences 🧬
3️⃣ Era 3: 3D Structures ⚛️

Solving deep evolutionary puzzles like never before. Our new review in GBE explores what's next in #phylogenetics

academic.oup.com/gbe/article/...

#structuralbiology #evolution #AlphaFold #SciSky
Protein Structural Phylogenetics
Abstract. Protein structural phylogenetics is an interdisciplinary branch of molecular evolution that (i) uses 3D structural data to trace evolutionary his
academic.oup.com
Reposted by Susie Grigson
linsalrob.bsky.social
New in @asm.org #MMBR Computational function prediction of bacteria and phage proteins. How to annotate your #phage and #bacteria genomes

by @susiegriggo.bsky.social @bedutilh.bsky.social @gbouras13.bsky.social and Bob

#phagesky #microsky

journals.asm.org/doi/epub/10....
Examples of protein annotations across functional classification schemes. Yellow: hierarchical classification schemes, red: orthologous/homologous groups, and blue: methods using protein domain information. Protein structures were generated using the ColabFold Alphafold MMseqs2 interactive notebook (version 1.5.2) (57) and visualized using ChimeraX (58). (A) Functional labels associated with the glycogen synthase protein in Escherichia coli (UniprotKB P0A6U8). (B) Functional labels associated with Kehishuvirus sp. tikala major capsid protein (NCBI WEU69752.1).
Reposted by Susie Grigson
adelaideprotein.bsky.social
💡The APG Quiz Night is back for 2025!💡

Join us on the 3rd of October at The University of Adelaide for a night of trivia, laughs, pizzas, and drinks! 🍕🍺

🎟️Tickets: $5 (ASBMB members FREE entry + chance to win the door prize!)

⚡Only 100 spots available – register now! bit.ly/4p2KSlp
APG Quiz Night 2025
Register on Humanitix - APG Quiz Night 2025. The University of Adelaide, Ingkarni Wardli, Room B18, The University of Adelaide, Ingkarni Wardli, Adelaide SA 5000, Australia. Friday 3rd October 2025. F...
bit.ly
susiegriggo.bsky.social
Finally, a huge thank you to the entire community of developers whose tools and methods made this review possible, you’re the reason this field is moving forward so quickly 🙌
Reposted by Susie Grigson
sarahgurev.bsky.social
🚨New paper 🚨

Can protein language models help us fight viral outbreaks? Not yet. Here’s why 🧵👇
1/12
Reposted by Susie Grigson
Reposted by Susie Grigson
biorxiv-bioinfo.bsky.social
Protein Structure Informed Bacteriophage Genome Annotation with Phold https://www.biorxiv.org/content/10.1101/2025.08.05.668817v1