Susie Grigson
@susiegriggo.bsky.social
290 followers
190 following
17 posts
PhD Student @ Flinders University | #bioinformatics #phage #microbiome 🦠💻🧬 | she/her
https://github.com/susiegriggo
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Susie Grigson
@susiegriggo.bsky.social
· Jul 30
Synteny-aware functional annotation of bacteriophage genomes with Phynteny
Accurate genome annotation is fundamental to decoding viral diversity and understanding bacteriophage biology; yet, the majority of bacteriophage genes remain functionally uncharacterised. Bacteriopha...
www.biorxiv.org
Reposted by Susie Grigson
Reposted by Susie Grigson
Reposted by Susie Grigson
Reposted by Susie Grigson
Reposted by Susie Grigson
Zamin Iqbal
@zaminiqbal.bsky.social
· Sep 7
Clustering of plasmid genomes for genomic epidemiology by using rearrangement distances, with pling
Integration of plasmids into genomic epidemiology is challenging, because there are no clearly defined evolving-units (equivalent to species), and because plasmids appear to evolve as much by structur...
www.biorxiv.org
Reposted by Susie Grigson
Sorek Lab
@soreklab.bsky.social
· Sep 2
Synthetically designed anti-defense proteins overcome barriers to bacterial transformation and phage infection
Bacterial defense systems present considerable barriers to both phage infection and plasmid transformation. These systems target mobile genetic elements, limiting the efficacy of bacteriophage-based t...
www.biorxiv.org
Reposted by Susie Grigson
Rob Edwards
@linsalrob.bsky.social
· Aug 29
Reposted by Susie Grigson
Reposted by Susie Grigson
Reposted by Susie Grigson
Emmanuele Severi
@emmseveri.bsky.social
· Aug 14
Synteny and linkage decay in bacteriophage pangenomes
Bacteriophages are rich in genetic diversity, due to frequent horizontal transfer and recombination. This makes traditional microbial phylogenetic analyses, often based on the assumption of vertical i...
www.biorxiv.org
Susie Grigson
@susiegriggo.bsky.social
· Aug 18
Susie Grigson
@susiegriggo.bsky.social
· Aug 18
Synteny-aware functional annotation of bacteriophage genomes with Phynteny
Accurate genome annotation is fundamental to decoding viral diversity and understanding bacteriophage biology; yet, the majority of bacteriophage genes remain functionally uncharacterised. Bacteriopha...
www.biorxiv.org
Susie Grigson
@susiegriggo.bsky.social
· Aug 18
Computational function prediction of bacteria and phage proteins | Microbiology and Molecular Biology Reviews
SUMMARYUnderstanding protein functions is crucial for interpreting microbial life; however,
reliable function annotation remains a major challenge in computational biology. Despite
significant advance...
journals.asm.org
Reposted by Susie Grigson
Reposted by Susie Grigson
Reposted by Susie Grigson
Susie Grigson
@susiegriggo.bsky.social
· Jul 30
Synteny-aware functional annotation of bacteriophage genomes with Phynteny
Accurate genome annotation is fundamental to decoding viral diversity and understanding bacteriophage biology; yet, the majority of bacteriophage genes remain functionally uncharacterised. Bacteriopha...
www.biorxiv.org
Reposted by Susie Grigson
George Bouras
@gbouras13.bsky.social
· Aug 8
Synteny-aware functional annotation of bacteriophage genomes with Phynteny
Accurate genome annotation is fundamental to decoding viral diversity and understanding bacteriophage biology; yet, the majority of bacteriophage genes remain functionally uncharacterised. Bacteriopha...
www.biorxiv.org
Reposted by Susie Grigson
George Bouras
@gbouras13.bsky.social
· Aug 8
Protein Structure Informed Bacteriophage Genome Annotation with Phold
Bacteriophage (phage) genome annotation is essential for understanding their functional potential and suitability for use as therapeutic agents. Here we introduce Phold, an annotation framework utilis...
www.biorxiv.org
Reposted by Susie Grigson