@vanhungbui.bsky.social
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vanhungbui.bsky.social
My first PhD paper is out today!
Huge thanks to Dr. Thuy Dang (UBC), Dr. Robin Buell (UGA), and @chenxinli2.bsky.social (MSU) for your guidance and support!
Special thanks to Li, for his mentorship in single-cell analysis and bioinformatics.
chenxinli2.bsky.social
Our new short article is online at Plant Biotech J (onlinelibrary.wiley.com/doi/10.1111/...)!

"Single Cell Multi-Omics Reveals Rare Biosynthetic Cell Types in the Medicinal Tree Camptotheca acuminata"

Product of an NSF-EAGER award that I was co-PI from 2023-2025 (www.nsf.gov/awardsearch/...).
Figure of the paper.
Reposted
chenxinli2.bsky.social
🤩🤩🤩
lucas.farnunglab.com
New week, new tool: Find our Protein Domain Designer tool to generate publication-ready protein domain diagrams here: domaindesigner.farnunglab.com
Protein Domain Designer tool for the generation of publication-ready protein domain diagrams
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nickdesnoyer.bsky.social
The "Florédex" ✨, a pokémon-inspired vector collection of the greatest flower designs and their science is coming along nicely 🌷🧬

All hand-drawn, digitalised, and animated.
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nickdesnoyer.bsky.social
Friday Flower 001: Mimulus lewisii 🌸✨

Monkeyflowers are masterpieces of design with nectar-guide spots formed by an activator–inhibitor system of MYB transcription factors. These generate reaction–diffusion patterns across the ventral petal.
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cmcclune.bsky.social
A truly enabling new approach by @taralowensohn.bsky.social Will Cody and @sattelylab.bsky.social to probe plant genetics at scale.

Single-gene-per-cell delivery coupled to an effective transcriptional selection system

www.biorxiv.org/content/10.1...
vanhungbui.bsky.social
Congratulations. Hope to visit your lab one day.
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nickdesnoyer.bsky.social
Happy to share that I’ve been awarded a grant from
@osventuresllc.bsky.social to develop a genetic toolkit for flower design! Here was my 1-minute pitch.

More details of what I'm building coming soon 🌹✨
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mpi-ce.bsky.social
Lead author @matildeflorean.bsky.social‬ et al. from the @oconnorlab.bsky.social discover a "fake" enzyme in plants that enables the formation of free indole, a key molecule for defense & attracting pollinators.
www.ice.mpg.de/496511/PR_Fl...
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maitecolinas.bsky.social
Next preprint out from my work @oconnorlab.bsky.social @mpi-ce.bsky.social : the discovery or iridoid cyclase in asterids!
Thread below.
#PlantScience
#natprod

www.biorxiv.org/content/10.1...
www.biorxiv.org
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cmcclune.bsky.social
Today in Nature we report a systematic strategy to activate & identify gene sets in plants. We identify 8 new genes from the yew tree's Taxol biosynthetic pathway, enabling us to engineer tobacco with 17- & 20-gene pathways to Taxol precursors baccatin III & deBz-deoxy-Taxol #SingleCell #secmet 🧬🧪🌾
Discovery of FoTO1 and Taxol genes enables biosynthesis of baccatin III - Nature
An approach that combines single-nucleus RNA sequencing and multiplexed perturbation identifies genes that enable the biosynthesis of direct precursors of the anti-cancer drug Taxol, whose curren...
www.nature.com
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chenxinli2.bsky.social
New preprint! We used single cell sequencing & metabolomics to look at cell type specificity of specialized metabolism in Camptotheca, the source of chemotherapeutic agent camptothecin, as well as comparative analyses w/ Catharanthus, which we previously worked on. 🧵

www.biorxiv.org/content/10.1...
Camptotheca and Catharanthus, both produced alkaloids that are used in cancer chemotherapy, last shared a common ancestor ~115 mya. They shared an iridoid biosynthetic pathway. We found new, rare biosynthetic genes in Camptotheca that are different from those in Catharanthus.
Reposted
chenxinli2.bsky.social
Our data imply that the same clades of TFs have been co-opted to regulate cell type specific biosynthesis across species. Thus, 1) cross-species analyses increase the power for finding new metabolic regulators; 2) TFs are evolutionarily older than their target biosynthetic genes. 3/n
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chenxinli2.bsky.social
This is my 1st paper as last author & (co-)corresponding author. It's a pleasure to mentor the 1st author @vanhungbui.bsky.social at U. British Columbia, Okanagan on single cell analysis. This study was supported by an NSF-EAGER project awarded to me (coPI) + Robin Buell at University of Georgia.
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chenxinli2.bsky.social
New manuscript has been written. An international collaboration between US, Germany, and Canada. And a long Acknowledgement section, since each lab has its own funding, services, and colleagues to acknowledge.
A screenshot of the long Acknowledgement section of a manuscript draft.