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Vera Pancaldi @verapancaldi.bsky.social · Jul 21

Wonderful sunny day in Liverpool for #ISMBECCB2025!
Marcelo Hurtado #TransMed talk on CellTFusion tomorrow 3:50, Hugo Chenel #NetBio poster (D-430) on GRNs. I will talk about our paper with Benoît Aliaga and Flavien Raynal in #RegSys on Wednesday. See you there!
academic.oup.com/nar/article/...

Global chromatin reorganization and regulation of genes with specific evolutionary ages during differentiation and cancer

Abstract. Cancer cells are highly plastic, favoring adaptation to changing conditions. Genes related to basic cellular processes evolved in ancient species

academic.oup.com

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Vera Pancaldi @verapancaldi.bsky.social · Jul 21

Thanks for the invitation! Made it to Liverpool and looking forward to the session!

Anthony Mathelier @amathelier.bsky.social · Jul 21

The #RegSys @iscb-regsys.bsky.social track is gonna be outstanding again this year with a great selection of talks and keynotes @verapancaldi.bsky.social, Mafalda Dias, Roser Vento-Tormo, and @lucapinello.bsky.social !

www.iscb.org/ismbeccb2025...

RegSys

ISCB - International Society for Computational Biology

www.iscb.org

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Vera Pancaldi @verapancaldi.bsky.social · Jun 28

It was a real pleasure to discover the wonderful @ciml.bsky.social institute! Clearly a successful example of how bioinformatics can be central to biomedical research, very interesting conversations, thanks for the invitation!

Centre d'Immunologie de Marseille Luminy @ciml.bsky.social · Jun 27

Yesterday, we had the pleasure to welcome Dr. Vera Pancaldi from Centre de Recherche en Cancérologie de Toulouse in our CIML seminar series.

Vera gave a brillant seminar on "Data-driven mathematical models for simulating the tumour microenvironment"

Thanks for visiting @verapancaldi.bsky.social !

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Reposted by Vera Pancaldi

NetBioMed 2025 @netbiomed2025.bsky.social · Jun 2

Kristel Van Steen kicks off our #NetBioMed2025 Satellite discussing how to use #networkscience to develop individual medical networks, going towards personalized medicine!

@netsciconf.bsky.social @verapancaldi.bsky.social

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Reposted by Vera Pancaldi

NetBioMed 2025 @netbiomed2025.bsky.social · Jun 2

Our second talk of the day corresponds to Natasa Przulj, who gave us a detailed explanation on how to use #AI techniques in order to build #complexnetworks based on multi-omics!

#NetBioMed2025 #NetSci2025 @verapancaldi.bsky.social

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Reposted by Vera Pancaldi

NetBioMed 2025 @netbiomed2025.bsky.social · Jun 2

Happening just now #NetSci2025 folks! Don't miss it, we are just starting our #NetBioMed2025 satellite at @netsciconf.bsky.social!

Vera Pancaldi @verapancaldi.bsky.social · Jun 1

@netsciconf.bsky.social crossing Holland on my way to Maastricht for @netbiomed2025.bsky.social Join us tomorrow at FASOS for a great day of network biomedicine talks!

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Reposted by Vera Pancaldi

NetBioMed 2025 @netbiomed2025.bsky.social · Jun 2

We just had Martin Guillemaud, who is using network #clustering applied to #cytokine profiles in order to better understand epileptic seizures in multiple patients. An amazing talk at #NetBioMed2025!

#NetSci2025 @verapancaldi.bsky.social

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Reposted by Vera Pancaldi

NetBioMed 2025 @netbiomed2025.bsky.social · Jun 2

At #NetBioMed2025 Martina Summer-Kutmon just introduced us to her methodology to use a #COVID dataset in order to build knowledge graphs and explain multiple post-pandemic effects on people. Very nice!

#NetSci2025 @verapancaldi.bsky.social

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Reposted by Vera Pancaldi

NetBioMed 2025 @netbiomed2025.bsky.social · Jun 2

Before lunch break Elma Dervic gave us a very quick talk on how to build comorbidity networks from data. I loved her visualization through time. More amazing talks at #NetBioMed2025 after lunch, so stay tuned! #NetSci2025 @verapancaldi.bsky.social

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Reposted by Vera Pancaldi

NetBioMed 2025 @netbiomed2025.bsky.social · Jun 2

Kicking off our afternoon session, @cantinilab.bsky.social discusses her dual approach to capture both multi-modal dimensionality reduction and molecular network inference. She gave a very nice overview of her work!

#NetBioMed2025 #NetSci2025 @verapancaldi.bsky.social

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Reposted by Vera Pancaldi

NetBioMed 2025 @netbiomed2025.bsky.social · Jun 2

We just had an amazing talk by Manuel Ruiz-Botella, who introduced us to #CoCoGraph, a graph diffusion model for the generation of realistic synthetic molecules. Only here, at #NetBioMed2025, a satellite being held at #NetSci2025! @verapancaldi.bsky.social @netsciconf.bsky.social

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Reposted by Vera Pancaldi

NetBioMed 2025 @netbiomed2025.bsky.social · Jun 1

Please don't forget to join #NetBioMed2025 tomorrow, the only @netsciconf.bsky.social satellite on #machinelearning, #AI, and #networkscience applied to #medicine, #biology, #digitaltwins, and beyond!

Vera Pancaldi @verapancaldi.bsky.social · Jun 1

@netsciconf.bsky.social crossing Holland on my way to Maastricht for @netbiomed2025.bsky.social Join us tomorrow at FASOS for a great day of network biomedicine talks!

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Vera Pancaldi @verapancaldi.bsky.social · Jun 1

@netsciconf.bsky.social crossing Holland on my way to Maastricht for @netbiomed2025.bsky.social Join us tomorrow at FASOS for a great day of network biomedicine talks!

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Vera Pancaldi @verapancaldi.bsky.social · May 27

NetBioMed @netsciconf.bsky.social in Maastricht next Monday 2nd June! Thanks to @bsc-cns.bsky.social, @plos.org and many more for sponsorship netbiomed2025.github.io/2025/sponsors.
Please register here so we get the right amount of lunch:-)
alturl.com/kwom9 #NetBioMed2025 #NetSci2025

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Vera Pancaldi @verapancaldi.bsky.social · May 14

Single cell multiomics meet network scientists, join us in Maastricht @netbiomed2025.bsky.social @netscience.bsky.social

NetBioMed 2025 @netbiomed2025.bsky.social · May 14

How can we design #machinelearning methods able to co-analyze the numerous available #omics data and translate them into actionable biological knowledge? @cantinilab.bsky.social will answer this and other exciting questions related to single-cell data integration! #NetBioMed2025 #NetSci2025

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Vera Pancaldi @verapancaldi.bsky.social · May 12

@netsciconf.bsky.social looking forward to @netbiomed2025.bsky.social ! @netscience.bsky.social

NetBioMed 2025 @netbiomed2025.bsky.social · May 12

How can we develop theoretical approaches that allow us to integrate multi-scale data to understand and cure degenerative diseases? Check out this talk on #networkmedicine and #digitaltwins by @lmrocha.bsky.social!

#NetBioMed2025 #NetSci2025

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Reposted by Vera Pancaldi

NetBioMed 2025 @netbiomed2025.bsky.social · May 12

#NetSci2025 takes place next month and all this week we will finally announce our keynote talks, discussing #digitaltwins, #multiomics, #biomedicine, #AI, and much more! 🧬🩺🔬

@netsciconf.bsky.social

Check out our full agenda for #NetBioMed2025 here below. 👇👀

netbiomed2025.github.io/2025/agenda

Agenda

The official website for NetBioMed satellite

netbiomed2025.github.io

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Vera Pancaldi @verapancaldi.bsky.social · Mar 19

Don't miss your chance to speak to @benoit3166.bsky.social about our new paper on gene ages and 3D chromatin organisation in Lyon!

Benoît Aliaga @benoit3166.bsky.social · Mar 19

Come check out my poster (#4) at the Persister Cells Conference! I’ll be presenting our latest publication from 1:00 to 2:30 PM—happy to discuss and answer questions. See you there!

📍 Poster #4
🕐 1:00 - 2:30 PM

More details here: t.co/stm6WyvOYR

@helloeacr.bsky.social @verapancaldi.bsky.social

https://academic.oup.com/nar/article-abstract/doi/10.1093/nar/gkaf084/8020235?utm_source=etoc&utm_campaign=nar&utm_medium=email

t.co

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Reposted by Vera Pancaldi

Eric Topol @erictopol.bsky.social · Mar 12

An important graph and caption on the impact of Covid www.nytimes.com/interactive/...

Disability increase from COVID in the US graph

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Vera Pancaldi @verapancaldi.bsky.social · Mar 10

Really excited that Anna Niarakis will give the next CRCT #bioinformatics seminar on Friday 14th March at 11 in salle Cazaux!

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Vera Pancaldi @verapancaldi.bsky.social · Mar 6

Last few hours for early bird fee to register and attend @netbiomed2025.bsky.social in Maastricht, 2nd June, great speakers ! netbiomed2025.github.io #AI #DigitalTwins

Vera Pancaldi @verapancaldi.bsky.social · Mar 2

4 days to go before @netsciconf.bsky.social
early bird tariff ends: Don't miss your chance to attend
@netbiomed2025.bsky.social, don't forget to register. Please check out our website for details netbiomed2025.github.io #AI #DigitalTwins

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Vera Pancaldi @verapancaldi.bsky.social · Mar 2

4 days to go before @netsciconf.bsky.social
early bird tariff ends: Don't miss your chance to attend
@netbiomed2025.bsky.social, don't forget to register. Please check out our website for details netbiomed2025.github.io #AI #DigitalTwins

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Vera Pancaldi @verapancaldi.bsky.social · Feb 27

Don't miss a chance to register for this great meeting @netsciconf.bsky.social ! Registration is early bird until March 6th, please check out our website netbiomed2025.github.io

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Vera Pancaldi @verapancaldi.bsky.social · Feb 23

Really happy about our paper about organisation of genes in the 3D nucleus according to their ages in differentiation and oncogenesis. Some of this has been bugging me for a decade, still a lot to do, but it's a first step! Congrats to Flavien Raynal and @benoit3166.bsky.social! Check the thread!

Benoît Aliaga @benoit3166.bsky.social · Feb 21

Our new paper is out! Our findings shed light on gene regulation according to evolutionary age and suggest this organization changes across differentiation and oncogenesis. Read our thread below! #cancer #chromatin #evolution @narjournal.bsky.social shorturl.at/rJ2VQ

Global chromatin reorganization and regulation of genes with specific evolutionary ages during differentiation and cancer

Abstract. Cancer cells are highly plastic, favoring adaptation to changing conditions. Genes related to basic cellular processes evolved in ancient species

shorturl.at

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Vera Pancaldi @verapancaldi.bsky.social · Feb 13

Always wanted to do this since my PhD! Nice!

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