Christina Ernst
@christinaernst.bsky.social
Functional Genomics Team Leader @ebi.embl.org
Interested in all things #genomics, #singlecell, and #openscience
Interested in all things #genomics, #singlecell, and #openscience
Reaching out to the functional genomics community 🧬
If you’re looking to submit your data, you can use our Annotare submission tool at @ebi.embl.org. It connects directly to the ArrayExpress collection for long-term archival and public sharing.
🔗 www.ebi.ac.uk/fg/annotare/...
If you’re looking to submit your data, you can use our Annotare submission tool at @ebi.embl.org. It connects directly to the ArrayExpress collection for long-term archival and public sharing.
🔗 www.ebi.ac.uk/fg/annotare/...
Annotare < EMBL-EBI
Annotare, the ArrayExpress submission tool
www.ebi.ac.uk
October 24, 2025 at 11:46 AM
Reaching out to the functional genomics community 🧬
If you’re looking to submit your data, you can use our Annotare submission tool at @ebi.embl.org. It connects directly to the ArrayExpress collection for long-term archival and public sharing.
🔗 www.ebi.ac.uk/fg/annotare/...
If you’re looking to submit your data, you can use our Annotare submission tool at @ebi.embl.org. It connects directly to the ArrayExpress collection for long-term archival and public sharing.
🔗 www.ebi.ac.uk/fg/annotare/...
Reposted by Christina Ernst
🚀 Expression Atlas Release 43 is live!
🧬 New Marker Gene View for all baseline (RNA & protein) experiments - instantly spot tissue- or condition-specific expression patterns.
🔎 Plus, a new technology filter for faster dataset discovery.
🔗ebi.ac.uk/gxa
@ebi.embl.org
🧬 New Marker Gene View for all baseline (RNA & protein) experiments - instantly spot tissue- or condition-specific expression patterns.
🔎 Plus, a new technology filter for faster dataset discovery.
🔗ebi.ac.uk/gxa
@ebi.embl.org
October 17, 2025 at 1:32 PM
🚀 Expression Atlas Release 43 is live!
🧬 New Marker Gene View for all baseline (RNA & protein) experiments - instantly spot tissue- or condition-specific expression patterns.
🔎 Plus, a new technology filter for faster dataset discovery.
🔗ebi.ac.uk/gxa
@ebi.embl.org
🧬 New Marker Gene View for all baseline (RNA & protein) experiments - instantly spot tissue- or condition-specific expression patterns.
🔎 Plus, a new technology filter for faster dataset discovery.
🔗ebi.ac.uk/gxa
@ebi.embl.org
Reposted by Christina Ernst
Some scientists aren’t waiting for journals to catch up. They’re showing us what’s next.
The Beyond the Journal awards honor those breaking the mold in how science is shared.
More details: pracheeac.substack.com/p/off-roadin...
Nominate or self-nominate here: www.experiment.foundation/beyond
The Beyond the Journal awards honor those breaking the mold in how science is shared.
More details: pracheeac.substack.com/p/off-roadin...
Nominate or self-nominate here: www.experiment.foundation/beyond
October 8, 2025 at 12:38 AM
Some scientists aren’t waiting for journals to catch up. They’re showing us what’s next.
The Beyond the Journal awards honor those breaking the mold in how science is shared.
More details: pracheeac.substack.com/p/off-roadin...
Nominate or self-nominate here: www.experiment.foundation/beyond
The Beyond the Journal awards honor those breaking the mold in how science is shared.
More details: pracheeac.substack.com/p/off-roadin...
Nominate or self-nominate here: www.experiment.foundation/beyond
Reposted by Christina Ernst
🚨 Two weeks left to apply for the EMBL-EBI–Sanger Postdoctoral (ESPOD) Programme.
Apply by: 30 September 2025.
Ready to take the next step in your science career?
www.ebi.ac.uk/research/pos...
@sangerinstitute.bsky.social
#postdoc #sciencecareers
Apply by: 30 September 2025.
Ready to take the next step in your science career?
www.ebi.ac.uk/research/pos...
@sangerinstitute.bsky.social
#postdoc #sciencecareers
September 16, 2025 at 9:56 AM
🚨 Two weeks left to apply for the EMBL-EBI–Sanger Postdoctoral (ESPOD) Programme.
Apply by: 30 September 2025.
Ready to take the next step in your science career?
www.ebi.ac.uk/research/pos...
@sangerinstitute.bsky.social
#postdoc #sciencecareers
Apply by: 30 September 2025.
Ready to take the next step in your science career?
www.ebi.ac.uk/research/pos...
@sangerinstitute.bsky.social
#postdoc #sciencecareers
Interested in spatial transcriptomics, interactive visualisation, and AI?
We’re teaming up with @mhaniffa.bsky.social and @juliosaezrod.bsky.social on Project 5 - for someone keen to build open tools that make complex biological data more accessible!
Apply by 30 Sep: www.ebi.ac.uk/research/pos...
We’re teaming up with @mhaniffa.bsky.social and @juliosaezrod.bsky.social on Project 5 - for someone keen to build open tools that make complex biological data more accessible!
Apply by 30 Sep: www.ebi.ac.uk/research/pos...
August 21, 2025 at 7:47 PM
Interested in spatial transcriptomics, interactive visualisation, and AI?
We’re teaming up with @mhaniffa.bsky.social and @juliosaezrod.bsky.social on Project 5 - for someone keen to build open tools that make complex biological data more accessible!
Apply by 30 Sep: www.ebi.ac.uk/research/pos...
We’re teaming up with @mhaniffa.bsky.social and @juliosaezrod.bsky.social on Project 5 - for someone keen to build open tools that make complex biological data more accessible!
Apply by 30 Sep: www.ebi.ac.uk/research/pos...
Reposted by Christina Ernst
Got a PhD in nearly any science? Want to do a postdoc? Are you interested in biology, genomics and computers? Perhaps you are computational/maths-ey and want to get closer to the lab? or experimental and want to get a bit more geeky? Want to work with global leaders in genomics and comp. bio? =>
Recruitment is now open for the EMBL-EBI–Sanger Postdoctoral Programme.
ESPOD builds on the collaborative relationship between EMBL-EBI and the @sangerinstitute.bsky.social, offering projects that combine experimental and computational approaches.
www.ebi.ac.uk/research/pos...
🧬🖥️🔬#postdocjob
ESPOD builds on the collaborative relationship between EMBL-EBI and the @sangerinstitute.bsky.social, offering projects that combine experimental and computational approaches.
www.ebi.ac.uk/research/pos...
🧬🖥️🔬#postdocjob
August 13, 2025 at 4:21 PM
Got a PhD in nearly any science? Want to do a postdoc? Are you interested in biology, genomics and computers? Perhaps you are computational/maths-ey and want to get closer to the lab? or experimental and want to get a bit more geeky? Want to work with global leaders in genomics and comp. bio? =>
Reposted by Christina Ernst
Great career opportunities in Cellular Genomics @sangerinstitute.bsky.social
Big data (human in vivo + in vitro) + AI to derive biological mechanisms at scale.
We are seeking a range of research expertise including spatial omics and perturbation at scale
Big data (human in vivo + in vitro) + AI to derive biological mechanisms at scale.
We are seeking a range of research expertise including spatial omics and perturbation at scale
Group leader positions in @sangerinstitute.bsky.social Cellular Genomics, led by @mhaniffa.bsky.social, to decode and recode human tissues. Broad net - clinical research, in vitro models, single cell, AI. Vibrant, supportive community. Please share!
sanger.wd103.myworkdayjobs.com/en-GB/Wellco...
sanger.wd103.myworkdayjobs.com/en-GB/Wellco...
August 1, 2025 at 11:02 AM
Great career opportunities in Cellular Genomics @sangerinstitute.bsky.social
Big data (human in vivo + in vitro) + AI to derive biological mechanisms at scale.
We are seeking a range of research expertise including spatial omics and perturbation at scale
Big data (human in vivo + in vitro) + AI to derive biological mechanisms at scale.
We are seeking a range of research expertise including spatial omics and perturbation at scale
Reposted by Christina Ernst
bioRxiv bat signal going up. We have a big backlog of submissions. If any affiliates have time to do some screening, we (and all the authors) would be immensely grateful! 🙏
July 31, 2025 at 12:32 PM
bioRxiv bat signal going up. We have a big backlog of submissions. If any affiliates have time to do some screening, we (and all the authors) would be immensely grateful! 🙏
My team @ebi.embl.org is open to hosting #ARISE2 fellows!
We‘re especially interested in projects that improve access to single-cell & spatial transcriptomics data (e.g. browsers, standards), or enhance AI-readiness.
Happy to chat if you are applying!
www.embl.org/training/ari...
We‘re especially interested in projects that improve access to single-cell & spatial transcriptomics data (e.g. browsers, standards), or enhance AI-readiness.
Happy to chat if you are applying!
www.embl.org/training/ari...
July 11, 2025 at 1:22 PM
My team @ebi.embl.org is open to hosting #ARISE2 fellows!
We‘re especially interested in projects that improve access to single-cell & spatial transcriptomics data (e.g. browsers, standards), or enhance AI-readiness.
Happy to chat if you are applying!
www.embl.org/training/ari...
We‘re especially interested in projects that improve access to single-cell & spatial transcriptomics data (e.g. browsers, standards), or enhance AI-readiness.
Happy to chat if you are applying!
www.embl.org/training/ari...
Reposted by Christina Ernst
The Functional Genomics Team at @ebi.embl.org is open to hosting #ARISE2 fellows! If you're interested in research infrastructure we welcome project ideas that support transcriptomics data reuse - incl. spatial, single-cell, or AI-ready infrastructure.
www.embl.org/training/ari...
www.embl.org/training/ari...
July 11, 2025 at 1:03 PM
The Functional Genomics Team at @ebi.embl.org is open to hosting #ARISE2 fellows! If you're interested in research infrastructure we welcome project ideas that support transcriptomics data reuse - incl. spatial, single-cell, or AI-ready infrastructure.
www.embl.org/training/ari...
www.embl.org/training/ari...
Reposted by Christina Ernst
We are seeking a Scientific Database Curator at @ebi.embl.org in collaboration with the @saezlab.bsky.social and GSK.
This role involves wrangling public transcriptomic data - bulk, single-cell, and spatial - for translational use and integration into our open data resources
Deadline 20 July
This role involves wrangling public transcriptomic data - bulk, single-cell, and spatial - for translational use and integration into our open data resources
Deadline 20 July
We have a curator position at @ebi.embl.org to work with GSK within a project to understand fibrotic processes (no PhD required). Deadline 20th July.
Please share 🙏
embl.wd103.myworkdayjobs.com/en-US/EMBL/j...
Please share 🙏
embl.wd103.myworkdayjobs.com/en-US/EMBL/j...
Scientific Database Curator – Fibrosis Transcriptomics
We are seeking a technically skilled and biologically literate Scientific Database Curator to join a focused initiative on fibrosis research, hosted at EMBL-EBI in collaboration with the Saez-Rodrigue...
embl.wd103.myworkdayjobs.com
July 8, 2025 at 8:21 AM
We are seeking a Scientific Database Curator at @ebi.embl.org in collaboration with the @saezlab.bsky.social and GSK.
This role involves wrangling public transcriptomic data - bulk, single-cell, and spatial - for translational use and integration into our open data resources
Deadline 20 July
This role involves wrangling public transcriptomic data - bulk, single-cell, and spatial - for translational use and integration into our open data resources
Deadline 20 July
Reposted by Christina Ernst
We're extremely grateful to Wellcome @wellcometrust.bsky.social for engaging in a more long-term funding collaboration with EMBL-EBI.
This will enable us to continue developing our open data resources for global users & leverage innovation in new areas such as AI 🌍
www.ebi.ac.uk/about/news/a...
This will enable us to continue developing our open data resources for global users & leverage innovation in new areas such as AI 🌍
www.ebi.ac.uk/about/news/a...
New Wellcome funding model supports the development of EMBL-EBI open data resources
EMBL’s European Bioinformatics Institute (EMBL-EBI) manages the world’s most comprehensive suite of open data resources for the life sciences. Millions of scientists worldwide rely on these data resou...
www.ebi.ac.uk
July 1, 2025 at 10:16 AM
We're extremely grateful to Wellcome @wellcometrust.bsky.social for engaging in a more long-term funding collaboration with EMBL-EBI.
This will enable us to continue developing our open data resources for global users & leverage innovation in new areas such as AI 🌍
www.ebi.ac.uk/about/news/a...
This will enable us to continue developing our open data resources for global users & leverage innovation in new areas such as AI 🌍
www.ebi.ac.uk/about/news/a...
Reposted by Christina Ernst
Paper alert! I am really pleased to share the final version of the work led by Irène Amblard in the team on a regulatory switch controlling Cdx2 expression during posterior body development! #regulatorylogic #devbio @mrc-lms.bsky.social @imperialmed.bsky.social
June 27, 2025 at 3:07 PM
Paper alert! I am really pleased to share the final version of the work led by Irène Amblard in the team on a regulatory switch controlling Cdx2 expression during posterior body development! #regulatorylogic #devbio @mrc-lms.bsky.social @imperialmed.bsky.social
Used EMBL-EBI data resources to find, analyse, or archive your data? 🧬
Now’s your turn: tell us how you’ve used them + why they matter.
It takes 15 mins and helps keep these services open and free for all.
👉 tinyurl.com/bdf73zpp
Closes 16 July
#opendata #FAIRdata
Now’s your turn: tell us how you’ve used them + why they matter.
It takes 15 mins and helps keep these services open and free for all.
👉 tinyurl.com/bdf73zpp
Closes 16 July
#opendata #FAIRdata
June 17, 2025 at 8:00 PM
Used EMBL-EBI data resources to find, analyse, or archive your data? 🧬
Now’s your turn: tell us how you’ve used them + why they matter.
It takes 15 mins and helps keep these services open and free for all.
👉 tinyurl.com/bdf73zpp
Closes 16 July
#opendata #FAIRdata
Now’s your turn: tell us how you’ve used them + why they matter.
It takes 15 mins and helps keep these services open and free for all.
👉 tinyurl.com/bdf73zpp
Closes 16 July
#opendata #FAIRdata
Reposted by Christina Ernst
With #PubMed being down, it’s worth reminding ourselves that European alternatives exist:
🔗 europepmc.org
🔗 www.ebi.ac.uk/ena/browser/...
🔗 www.ensembl.org
🔗 europepmc.org
🔗 www.ebi.ac.uk/ena/browser/...
🔗 www.ensembl.org
March 2, 2025 at 1:32 PM
With #PubMed being down, it’s worth reminding ourselves that European alternatives exist:
🔗 europepmc.org
🔗 www.ebi.ac.uk/ena/browser/...
🔗 www.ensembl.org
🔗 europepmc.org
🔗 www.ebi.ac.uk/ena/browser/...
🔗 www.ensembl.org
This is a fantastic opportunity! 🧬
Come join us at EMBL-EBI!
Come join us at EMBL-EBI!
📢 We’re looking for a new Team Leader!
@enasequence.bsky.social is recruiting a Team Leader to shape the strategy and direction for the ENA and Biosamples open data resources.
Interested?👇
@enasequence.bsky.social is recruiting a Team Leader to shape the strategy and direction for the ENA and Biosamples open data resources.
Interested?👇
February 17, 2025 at 11:41 AM
This is a fantastic opportunity! 🧬
Come join us at EMBL-EBI!
Come join us at EMBL-EBI!
Reposted by Christina Ernst
Excited to invite you to the Spatial Transcriptomics FAIR Data Management Workshop on Feb 26-27 at EMBL-EBI (hybrid)! Join us to discuss metadata & data standards, archiving, and data retrieval. Agenda & registration: tinyurl.com/spatial2025
Registration for SCO Spatial Data Meeting (26th Feb, 2025)
The SCO Spatial Data FAIR Meeting will take place on the 26th of February, 2025 at EMBL-EBI, UK. The event will take place from 12.00pm, 26th February to 1.30pm, 27th February, and will discuss metada...
tinyurl.com
February 4, 2025 at 2:51 PM
Excited to invite you to the Spatial Transcriptomics FAIR Data Management Workshop on Feb 26-27 at EMBL-EBI (hybrid)! Join us to discuss metadata & data standards, archiving, and data retrieval. Agenda & registration: tinyurl.com/spatial2025
Reposted by Christina Ernst
🎉 Excited to announce job openings in our new lab @mpi-bio-fml.bsky.social in Tübingen!🇩🇪Looking for enthusiastic colleagues to explore regeneration together! We have positions for:
🔬 Research Technician
💻 Bioinformatician
🎓 PhD Studentship
🧪🔬📖 Postdocs
Details and links below👇
🔬 Research Technician
💻 Bioinformatician
🎓 PhD Studentship
🧪🔬📖 Postdocs
Details and links below👇
December 20, 2024 at 8:33 AM
🎉 Excited to announce job openings in our new lab @mpi-bio-fml.bsky.social in Tübingen!🇩🇪Looking for enthusiastic colleagues to explore regeneration together! We have positions for:
🔬 Research Technician
💻 Bioinformatician
🎓 PhD Studentship
🧪🔬📖 Postdocs
Details and links below👇
🔬 Research Technician
💻 Bioinformatician
🎓 PhD Studentship
🧪🔬📖 Postdocs
Details and links below👇
Excited to share that I’ve joined EMBL-EBI as the new Functional Genomics Team Leader!
Looking forward to this new chapter and all the exciting opportunities and collaborations ahead!
#Bioinformatics #FunctionalGenomics #AI #openscience
Looking forward to this new chapter and all the exciting opportunities and collaborations ahead!
#Bioinformatics #FunctionalGenomics #AI #openscience
Welcome, Christina Ernst, our new Functional Genomics Team Leader!
Find out about Christina’s plans to develop standards for new data types using AI and meet her energetic dog Jupiter who loves paddleboarding and hiking 🐕
www.ebi.ac.uk/about/news/p...
Find out about Christina’s plans to develop standards for new data types using AI and meet her energetic dog Jupiter who loves paddleboarding and hiking 🐕
www.ebi.ac.uk/about/news/p...
December 11, 2024 at 5:30 PM
Excited to share that I’ve joined EMBL-EBI as the new Functional Genomics Team Leader!
Looking forward to this new chapter and all the exciting opportunities and collaborations ahead!
#Bioinformatics #FunctionalGenomics #AI #openscience
Looking forward to this new chapter and all the exciting opportunities and collaborations ahead!
#Bioinformatics #FunctionalGenomics #AI #openscience