Matt Smear
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mattsmear.bsky.social
Matt Smear
@mattsmear.bsky.social
Associate professor, University of Oregon
Follows your nose
Pinned
Sniffing helps animals identify smells and connect them to places and events, but noses can’t sense time or place.

How do brains connect odors with internal models of the world?

Our preprint suggests that the olfactory bulb participates in this connection.

www.biorxiv.org/content/10.1...
Reposted by Matt Smear
I don't think I'll ever get bored of looking at raster plots of head-direction cells 🤩
February 13, 2026 at 11:05 AM
it's outside my field and above my pay grade, but I can try.

People sometimes talk about the genome as a "blueprint", but the DNA is not a map of the organism.

A better metaphor frames the genome as a "recipe", but then who is the cook? A recipe can't cook itself.

hal.science/hal-05491732
February 11, 2026 at 5:23 PM
Reposted by Matt Smear
Philosophically, this replaces the substance-based view of reproduction (invariance by default, we explain change) with a process-based view (change by default, we explain stability), a better fit to living organisms, which are far-from-equilibrium organizations of processes.

10/11
February 11, 2026 at 2:45 PM
Reposted by Matt Smear
What is the genome’s role here? It is not a representation, code or instructions, but a transmissible constraint on development. In the same way as an enzyme is a constraint: it doesn’t change but acts by favoring certain reactions. Which reactions actually happen depend on the initial state.

9/11
February 11, 2026 at 2:45 PM
Reposted by Matt Smear
New preprint: “A dynamical perspective on biological reproduction”

hal.science/hal-05491732

The prevailing view is that an organism reproduces by building a new organism from its genomic representation, like von Neumann’s self-reproducing machine. But...
1/11
A dynamical perspective on biological reproduction
Classically, biological reproduction is explained as the building of a new organism from replicated genomic instructions. The corresponding theoretical model is von Neumann's self-reproducing machine, which relies on an invariant universal constructor that can build any machine from instructions. However, the reproductive incompatibility of species and the diversity of developing processes speak against the existence of a universal constructor. Without a universal constructor, the genome as representation of the organism is circularly defined: what the genome represents is specified by the developmental processes represented by the genome.<p>I propose to take invariant reproduction not as a premise, but as an emergent dynamical property.</p><p>Reproduction is seen as the iteration of a transform that maps one generation to the next, a transform shaped by the genome. Invariant reproduction then occurs when a reproductive sequence converges to a fixed point. A reproductive sequence may also diverge, converge to a cycle (multigenerational life cycle), or to one of several fixed points (non-genomic inheritance). When it does converge, it is necessarily to a stable point, implying that development is robust to perturbations. Finally, speciation can be understood as a process by which reproductive transforms become mutually incompatible, that is, the basins of attractions of the fixed points do not overlap any more. In this view, the genome is an inheritable constraint on development, not a representation of the organism. I suggest that this dynamical framework is a more coherent model of biological reproduction than von Neumann's computational framework.</p>
hal.science
February 11, 2026 at 2:45 PM
Reposted by Matt Smear
Are there moral limits to advancing a research career?

"Antonio Damasio..the director of USC’s Brain and Creativity Institute approached Jeffrey Epstein in 2013 and asked the convicted child sex offender to fund robotics neuroscience research"
#AcademicSky
www.uscannenbergmedia.com/2026/02/02/u...
USC professor asked Jeffrey Epstein to privately fund research in 2013
Emails from Epstein’s inbox show the Brain and Creativity Institute director met with the financier years after his 2008 conviction.
www.uscannenbergmedia.com
February 6, 2026 at 10:08 PM
Reposted by Matt Smear
nearly a thousand entries
February 5, 2026 at 1:40 AM
Reposted by Matt Smear
The Columbia Spectator actually got him and the university on the record, although I do find it a little funny that Columbia's statement basically amounted to "everyone already knew they were buds"

www.columbiaspectator.com/news/2026/02...
University Professor and Nobel laureate Richard Axel, CC ’67, was invited to close friend of 11 years Jeffrey Epstein’s island in 2011
<i>Updated Feb. 4 at 8:24 p.m.</i>
www.columbiaspectator.com
February 8, 2026 at 5:23 PM
A projection atlas of excitatory and inhibitory inputs to the

preBötzinger Complex:

substrates for multimodal breathing control

www.biorxiv.org/content/bior...
February 8, 2026 at 6:12 PM
Temporal organization of odor responses in the human olfactory bulb

www.researchsquare.com/article/rs-8...
January 26, 2026 at 5:56 AM
Reposted by Matt Smear
How do past sensory experiences prepare us for new ones? Our new paper tackles this long-standing question, revealing a role for activity sequences in the olfactory bulb. Excited to share our work led by @jonvgill.bsky.social with Mursel Karadas & Shy Shoham
www.biorxiv.org/content/10.6...
www.biorxiv.org
January 26, 2026 at 3:05 AM
Reposted by Matt Smear
At @elife.bsky.social you can now include explainer videos with every figure. Like going to a seminar while you engage with the paper. First example here elifesciences.org/articles/106...

Click the arrows next to each figure to get a video of @mathiassablemeyer.bsky.social explaining it for you!
January 22, 2026 at 6:16 PM
Reposted by Matt Smear
1/3 The humble glass jar is a workhorse in olfactory research, but comes w/ hidden problems:
- Unknown headspace concentration
- Concentration dilution by ambient air

These add noise to odor measurements.

Our preprint introduces something new, something bag.🧪 @jmainland.bsky.social & Matt Andres
Odor Sampling Bags Enable Reliable Delivery of Controlled Odor Concentrations
Precise control of odorant concentration is essential for reliable olfactory research, yet existing odorant delivery methods often suffer from solvent interactions and dilution from ambient air, limiting stimulus consistency in olfactory research. We developed an odor sampling bag system using Nalophan plastic to create a closed headspace with air as the carrier medium, eliminating solvent-related variability and ambient air dilution. In two independent experiments, 15 trained panelists each rated the perceived intensity of seven concentrations of benzaldehyde and 2-heptanone using both gas-sampling bags and glass jars. Bags produced higher maximum perceptual intensities (p < 0.001) and greater test-retest reliability than jars (Experiment 1: r = 0.89 vs. 0.81, p < 0.001; Experiment 2: r = 0.86 vs. 0.72, p < 0.001). Notably, the two tested odorants showed different maximum intensities in bags (p < 0.001) but not jars (p = 0.85), suggesting bags better preserve odorant-specific concentration differences. Photoionization detector measurements confirmed stable headspace concentrations over time, comparable to industry-standard Tedlar bags. This cost-effective approach offers improved stimulus control for olfactory psychophysics research. ### Competing Interest Statement Joel D. Mainland serves on the scientific advisory board of Osmo Labs, PBC and receives compensation for these activities. National Institutes of Health, https://ror.org/01cwqze88, F32 DC020380, T32 DC000014, U19 NS112953, R01 DC017757, R01 DC021663
www.biorxiv.org
January 16, 2026 at 8:29 PM
Reposted by Matt Smear
A 2006 Science paper revealed how ants pull off extraordinary feats of navigation. In the latest “This paper changed my life,” @tuthill.bsky.social discusses how this paper inspired him to consider how other insects sense their own bodies.

#neuroskyence

www.thetransmitter.org/this-paper-c...
This paper changed my life: John Tuthill reflects on the subjectivity of selfhood
Wittlinger, Wehner and Wolf’s 2006 “stilts and stumps” Science paper revealed how ants pull off extraordinary feats of navigation using a biological odometer, and it inspired Tuthill to consider how…
www.thetransmitter.org
January 12, 2026 at 2:51 PM
Reposted by Matt Smear
Less than two weeks left to apply for the Cephalopod Neuroscience Gordon Conference! An exciting lineup of speakers and posters, and financial aid is available upon request. 🐙🦑
www.grc.org/cephalopod-n...
January 6, 2026 at 4:41 PM
Reposted by Matt Smear
Bye bye 2025, a divisive year,
with many divisors: 3, 5, 9, 15, 25, 27, 45, 75, 81, 135, 225, 405, 675.

Happy 2026 = 2*1013
Just two primes

Cheers!
December 31, 2025 at 4:32 PM
Reposted by Matt Smear
A new comparative study of seven lizard species, including chameleons and bearded dragons, finds an ancient sleep rhythm conserved over millennia.

By Lauren Schenkman

www.thetransmitter.org/sleep/snoozi...
December 29, 2025 at 6:34 PM
Reposted by Matt Smear
Adam Kampff’s passion for understanding and explaining the world was unmatched. Living by example and not ever compromising on his dreams, Adam was uncanny in making people realize they can learn and understand anything and everything. Keep his dream alive!
In his own words: tinyurl.com/ye29csw3
December 15, 2025 at 1:16 PM
The olfactory bulb endocast as a proxy for mammalian olfaction
www.pnas.org/doi/full/10....
December 12, 2025 at 5:16 PM
Reposted by Matt Smear
‘It has been remarked that life’s aim is an act, not a thought’ or in other words evolution selects on the basis of what animals do.
December 11, 2025 at 5:53 PM
Reposted by Matt Smear
How do neural circuits generate the walking rhythm?

Using connectome simulations, @sarahpugly.bsky.social found a minimal central pattern generator (CPG) that produces oscillations in leg motor neurons. Same circuit motif for each 🪰 leg.

w @bingbrunton.bsky.social

www.biorxiv.org/content/10.1...
December 9, 2025 at 5:50 PM
Reposted by Matt Smear
Soapbox time: the problem with metabolic efficiency arguments in neuroscience is that they often confuse energy efficiency with energy expenditure. Biological systems are optimized for energy efficiency, but that does NOT imply they are optimized for low energy expenditure 🧵 1/
December 8, 2025 at 1:31 PM
Reposted by Matt Smear
nervous system because that improves our chances of survival. Again, this is not inefficient, it is a valid evolutionary strategy.

Many energy efficiency arguments in neuroscience are actually about energy consumption, saying that (for example) the number of action potentials is minimized. 5/
December 8, 2025 at 1:31 PM
Reposted by Matt Smear
Imagine: If we had a crystal ball that tells us what are the discoveries to be made, we wouldn't have to do science in the first place.

Apparently that's some scientists' scientific ideal. Rather than doing science. So many weird ontological and epistemic assumptions to unpack.
December 3, 2025 at 2:42 AM
Reposted by Matt Smear
As a result, it's a great marriage imo, replicability and AI. Pot meeting kettle. Shortcuts in search for shortcuts.
December 3, 2025 at 2:36 AM