Aanchal
@origichals.bsky.social
180 followers 180 following 73 posts
Human | Learner | PhD researcher studying SUMOylation (SUMO:SIM interactions) using Biochemistry and Structural Biology approach @msuskiewicz.bsky.social lab @cnrs.fr
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origichals.bsky.social
With our experience we kmow that the peptide is doing its best impression of Schrödinger’s molecule- there and not there :D
origichals.bsky.social
Trust me, success is finding a team with whom you can laugh with.
alexholehouse.bsky.social
Also needs to be said that (as some folks know) our software packages are named after birds, so while I was away, the lab filled my office with birds... ...but honestly... *very* tastefully.

Will stay for the foreseeable future!
BIRDS! EVERYWHERE! GEESE! PEACOCKS! HUMMINGBIRDS!
origichals.bsky.social
Since the pictures speak louder than words, here are some memories from SOLEIL. If one wants to know more about the synchrotron, have a look- youtu.be/b15hUPV5sBY?...
The thunderous device The detector: the crystal is placed in an intense beam of X-rays. The angles and intensities of diffracted X-rays are measured, with each compound having a unique diffraction pattern. As the crystal is gradually rotated, previous reflections disappear and new ones appear; the intensity of every spot is recorded at every orientation of the crystal. Multiple data sets may have to be collected, with each set covering slightly more than half a full rotation of the crystal and typically containing tens of thousands of reflections.[Ref: Wikipedia] The computer that does it all. From mounting the crystals, to washing the ice on them, to observing the robot mount the crystal ready for being targeted be x ray beams, to setting the parameters for resolution and transmission of the rays, to rotating the crystal step-by-step through 180°, with an image recorded at every step, to collecting the data with beautiful "dots" or spots to recording the crystal symmetry, unit cell, and image scaling, these are all done in a span of 5 minutes! Proxima rocks! The X-rays don’t just bounce off like a mirror; they diffract in fancy, physics-approved ways, creating a starry pattern on a detector that looks like a cosmic connect-the-dots puzzle. This diffraction pattern isn’t just for show, it holds the secret blueprint of the protein’s 3D structure, down to the angsty little twists of alpha-helices and the sassy zigzags of beta-sheets. Scientists then play molecular detective, reverse-engineering the dots into a full-blown atomic model.
origichals.bsky.social
People including Pierre Legrand and our in house crystallographer Franck Coste were kind to help us dive in the crystals world.

Definitely one of those days where you leave feeling 93% more brilliant just by standing near the equipment.

One of the memorable day of la vie.
origichals.bsky.social
We watched as crystals were mounted, zapped, and turned ever so precisely, collecting diffraction patterns from every angle. Each diffraction "dot" holds clues to the structure of the molecule- put them all together, and voila: we solve the atomic jigsaw puzzle...
origichals.bsky.social
Today we stepped into world of crystallography with Proxima2 beamline at SOLEIL synchrotron.
So what did we learn? Imagine convincing a tiny, perfect crystal to spill its atomic secrets by blasting it with an intense X-ray beam until it diffracts in a very specific, beautiful pattern.
origichals.bsky.social
Because in the end, science doesn’t grieve your prep. It doesn’t care how many hours you spent optimizing lysis buffers or re-checking A280 readings. The experiment moves forward. The next prep begins.

And you- tired, heartbroken, but stubborn- begin again too.
origichals.bsky.social
There are a hundred ways to lose your protein. Each one more devastating than the last. And yet, all you can do is sigh, clean up, and start again.
origichals.bsky.social
-Or the sample you leave on ice just a bit long. Or the low-abundance protein that gets lost in the foam during sonication. Or the time you mislabeled tubes, and loaded the blank onto the gel with all the confidence of a seasoned scientist only to find out you purified a control lysate by mistake.
origichals.bsky.social
-Sometimes it’s the column. You forget to properly equilibrate or clean and suddenly everything’s binding wrong. No amount of high-salt, low-pH, or imidazole will bring it back. You watch it ghost through the system, vanishing like hope on a Friday evening
origichals.bsky.social
-Maybe it’s the ultrafiltration device as the membrane’s compromised. Or worse, it cracks under pressure. One moment you’re concentrating sample, the next, you’re pouring your entire prep n wondering why it’s suddenly clear. The protein? Trapped inside the filter, or worse passed straight through.
origichals.bsky.social
- Maybe it’s the AKTA- a single loose tubing, a disconnected waste line, an unnoticed valve setting. The flow path goes rogue n suddenly, eluate flows not into labeled tubes, but straight into the tissue meant for catching condensation.Those Kimwipes? They just absorbed your week’s worth of protein.
origichals.bsky.social
You’ve navigated clogged filters, and suspiciously variable absorbance readings. Out of nowhere, the disaster strikes.
origichals.bsky.social
The Angst of Losing Protein Midway: A Protein That Never Made It to the SDS-PAGE.

You were so close. Just a few fractions away from your pure, precious protein. You’ve spent days, maybe weeks, growing cultures, lysing cells, spinning lysates, filtering, calibrating columns, babysitting gradients.
origichals.bsky.social
Today’s serotonin boost? My personal timer appearing while I was making gourmet meals for bacteria.

Who needs diamonds when you have surprise lab tools?
#PhDlife
Reposted by Aanchal
msuskiewicz.bsky.social
I supervise an excellent postdoc who's looking for a postdoc or associate position in < 1 yr. Highly skilled in chem biol and biochem (peptide synthesis, native chem ligation, bacterial expression, purification, intein-based splicing, crystallography, interaction assays). Contact me if interested.
origichals.bsky.social
You’ve cracked the code of success Martin. Now its time to annotate your achievements. Congratulations 👏
origichals.bsky.social
Am on it, Prof. The job of triggering maximum curiosity using minimal prefrontal cortex processing will be exciting.
origichals.bsky.social
SUMOylation studies just got a serious upgrade! Fresh out of the lab- our team including our brilliant chemist PostDoc just published a clean, streamlined way to purify SUMO E2 and SUMO RANGAP. Whether one is into structural biology or biochemical wizardry, this toolkit is your new best friend.
origichals.bsky.social
Amazing work with solid experimental backing and crystal structures. BindCraft is here to stay.
martinpacesa.bsky.social
Exciting to see our protein binder design pipeline BindCraft published in its final form in @Nature ! This has been an amazing collaborative effort with Lennart, Christian, @sokrypton.org, Bruno and many other amazing lab members and collaborators.

www.nature.com/articles/s41...
origichals.bsky.social
The good you do today, people will often forget tomorrow. Do good anyway.

Give the world the best you have, and it may never be enough. Give your best anyway.

You see, in the final analysis, it is between you and your God. It was never between you and them anyway.

Mother Teresa
origichals.bsky.social
If you are kind, people may accuse you of selfish, ulterior motives. Be kind anyway.

If you are successful, you will win some false friends and some true enemies. Succeed anyway.

What you spend years building, someone could destroy overnight. Build anyway.