Severin Einspanier
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sev1panier.bsky.social
Severin Einspanier
@sev1panier.bsky.social
Curious about plant pathology
Focused on quantitative disease resistance
Passioned about system-sciences
Agronomist @CAU
Reposted by Severin Einspanier
"Plant single cell RNAseq workshop: From current technologies to data analyses"  Saclay Plant Sciences Summer School, June 28 - July 3, 2026 – Versailles (France)
"Plant single cell RNAseq workshop: From current technologies to data analyses"  Saclay Plant Sciences Summer School, June 28 - July 3, 2026 – Versailles (France)
This Summer school is organized by the Saclay Plant Sciences (SPS) network, one of the largest European plant sciences communities.   scRNAseq approaches have revolutionized the way biologists approach their research subjects, by making it possible to dissect molecular mechanisms at the single-cell level. But although technological developments have recently made these approaches more accessible, their expensive use still requires significant technical training, including the good conception of experimental designs, the preparation of samples as well as their bioinformatics analyses. In addition, different protocols and various bioinformatics and statistical analyzes are available, and it can be difficult to choose the most relevant ones for the biological question at hand.   Over five days, the SPS Summer School 2026 will cover all the stages of a scRNAseq project in plants. Through a combination of lectures and practical work, the many specific features of plant models will be highlighted by experts from the Saclay Plant Sciences network (CNRS and INRAE), the ViB in Ghent and the Pasteur Institute. After this international school, participants will: –    Have an overview of the different scRNAseq technologies and understand their pros and cons. –    Be able to design experiments depending on the biological question.  –    Be trained on sample preparation techniques for single cell and single nuclei –    Understand the different steps of bioinformatics and statistical analysis –    Have a better biological interpretation of results –    Have facilitated exchanges with technology platforms, bioinformaticians, and biostatisticians in order to successfully complete their scRNAseq project The summer school will bring together outstanding and enthusiastic young scientists (PhD students and post-docs) from all over the world in order to exchange knowledge and ideas. It is limited to a small group of participants (20 maximum) to privilege informal interactions and scientific discussions   Application deadline: March 12, 2026 (midnight) Answers will be sent mid-April at the latest.    
eng-saclay-plant-sciences.hub.inrae.fr
November 26, 2025 at 7:53 PM
Reposted by Severin Einspanier
New preprint of the "BarFus"-group @tum.de from the Chair of Phytopathology @huckelhovenr.bsky.social
Transcriptome and hormone regulations shape drought stress-dependent Fusarium Head Blight susceptibility in different barley genotypes https://www.biorxiv.org/content/10.1101/2025.11.23.689882v1
November 26, 2025 at 8:10 PM
Reposted by Severin Einspanier
Did you ever wonder how #Solanum plants evolved quantitative disease resistance/ #QDR?
I am really excited to share our recently published manuscript, where we tried to contribute to addressing this question!

🌱https://tinyurl.com/2vz23ck6
Co-option of transcription factors drives evolution of quantitative disease resistance against a necrotrophic pathogen
Quantitative disease resistance in a wild tomato genotype evolved through species-specific regulatory network rewiring, with an ancient transcription facto
tinyurl.com
November 21, 2025 at 9:00 AM
Reposted by Severin Einspanier
We deeply analyzed barley double stress responses and discovered this:
Transcriptome and hormone regulations shape drought stress-dependent Fusarium Head Blight susceptibility in different barley genotypes https://www.biorxiv.org/content/10.1101/2025.11.23.689882v1
November 26, 2025 at 4:49 AM
Reposted by Severin Einspanier
🛡️RESEARCH🛡️

The transcription factor BnaWRKY75 enhances resistance to Sclerotinia sclerotiorum in oilseed rape by directly activating BnaICS1, thereby enhancing salicylic acid biosynthesis & triggering salicylic acid-dependent defenses - Liu et al.

🔗 doi.org/10.1093/jxb/...
#PlantScience 🧪
November 25, 2025 at 4:26 PM
Did you ever wonder how #Solanum plants evolved quantitative disease resistance/ #QDR?
I am really excited to share our recently published manuscript, where we tried to contribute to addressing this question!

🌱https://tinyurl.com/2vz23ck6
Co-option of transcription factors drives evolution of quantitative disease resistance against a necrotrophic pathogen
Quantitative disease resistance in a wild tomato genotype evolved through species-specific regulatory network rewiring, with an ancient transcription facto
tinyurl.com
November 21, 2025 at 9:00 AM
Reposted by Severin Einspanier
Chen et al. present the v4 upgrade of the DIVERGE software for identifying amino acid residues critical to functional shifts between protein subfamilies, including DIVERGE-Chat, a conversational AI agent for code-free exploration.

🔗 doi.org/10.1093/molbev/msaf277

#evobio #molbio #compbio
November 19, 2025 at 1:20 PM
Reposted by Severin Einspanier
SAVE THE DATE! The #PhenomicsWebinars are officially back! 📅

This season is proudly organized by the AI in Plant Phenotyping Working Group. Join us for our inaugural live webinar & subsequent discussion on:
🗓️ Date: 28.11.2025 ⏰ Time: 4-5pm (Berlin Time) Host: Prof. Arti Singh
November 17, 2025 at 1:57 PM
Reposted by Severin Einspanier
"Postdoc in the job market"
November 16, 2025 at 7:52 PM
Reposted by Severin Einspanier
My new Emmy Noether Group is recruiting!

🔬 Two PhD positions in plant pathogen evolution

🧬 Start: April 2026 (flexible)

📍 Dept. of Phytopathology & Plant Protection @rstam.bsky.social @uni-kiel.de

⏰ Apply by 15 Dec 2025

🔗 More info: www.uni-kiel.de/personal/de/...

Do get in touch or share 😊
Aktuelle Ausschreibungen
Aktuelle Ausschreibungen
www.uni-kiel.de
November 3, 2025 at 9:03 AM
Reposted by Severin Einspanier
🍇🌱 RESEARCH 🌱🍇

Botrytis cinerea infection is promoted by chitotetraose treatment, which has a role as a negative regulator of grapevine immunity, inhibiting MAPK phosphorylation and defense-related gene expression in roots & leaves - Marzari et al.

🔗 doi.org/10.1093/jxb/...
#PlantScience 🧪
October 25, 2025 at 4:05 PM
Reposted by Severin Einspanier
In plant-pathogen or plant-microbe interactions what is the proper null.

- there is specific coevolution of any pathogen/microbe such that it was at least partly adapted to the host isolated.

-the host of isolation may have not effected the pathogen in the slightest.
October 22, 2025 at 11:30 PM
Reposted by Severin Einspanier
Our paper on the evolution (duplicated) gene expression divergence in spatially resolved plant transcriptomes is now out @theplantcell.bsky.social

w/ @yvdp.bsky.social

#PlantSci #Evolution

academic.oup.com/plcell/advan...
Gene expression divergence following gene and genome duplications in spatially resolved plant transcriptomes
After gene and genome duplications, expression divergence across cell types is not random, and it can be explained by a combination of gene age, gene funct
academic.oup.com
October 16, 2025 at 11:20 AM
Reposted by Severin Einspanier
Co-option of transcription factors drives evolution of quantitative disease resistance against a necrotrophic pathogen (S Einspanier, C Tominello-Ramirez, F Delplace, R Stam) doi.org/10.1093/plce... #PlantScience @sev1panier
October 9, 2025 at 4:39 PM
Reposted by Severin Einspanier
#DPST25 at TU Braunschweig brings together 1,100 experts to discuss future challenges in #PlantProtection and #Phytomedicine – from pest spread and resistance to climate impacts.
🏅Congrats to Dr Müller and Dr Winter, honoured for their outstanding research.
@leibniz-dsmz.bsky.social #DPG
October 9, 2025 at 3:09 PM
Reposted by Severin Einspanier
Now with official press release. I'm very much looking forward to welcome @cbarragan.bsky.social in January

www.uni-kiel.de/en/details/n...
October 8, 2025 at 4:22 PM
Reposted by Severin Einspanier
👏 Congratulations and welcome to Kiel, Dr Christina Barragán! The Mexican molecular biologist has received funding from the renowned Emmy Noether Programme by the @dfg.de​ to research the evolution of agriculturally relevant fungal pathogens at Kiel University.
Emmy Noether Programme funds Cristina Barragán to study fungal pathogen evolution
DFG supports Emmy Noether Research Group at Kiel University to investigate fungal pathogens relevant to agriculture.
www.uni-kiel.de
October 8, 2025 at 3:05 PM
Reposted by Severin Einspanier
October 8, 2025 at 3:05 PM
Reposted by Severin Einspanier
Our first Annual Meeting marked a key milestone for the project, bringing together our community for engaging talks and valuable discussions. It was followed by a two-day workshop for early career scientists focused on networking and professional development. www.plantscochallenge.de/news.html
October 8, 2025 at 9:27 AM
Urs Niggli fordert eine grundlegende Revision d. direkten #Pflanzenschutz im ökologischen Landbau🌾🍄 Vielversprechende Diskussionen auf der #DPST25
October 8, 2025 at 9:14 AM
Reposted by Severin Einspanier
Very happy to see this work finally online!
Resistance against necrotrophic pathogens is not generally conserved. When comparing five wild tomato spp, we saw that one spp co-opted a different mechanism against Sclerotinia infection!
October 1, 2025 at 12:48 PM
Reposted by Severin Einspanier
This looks very interesting. Congrats @rstam.bsky.social et al. Co-option of transcription factors drives evolution of quantitative disease resistance against a necrotrophic pathogen url: academic.oup.com/plcell/artic...
Co-option of transcription factors drives evolution of quantitative disease resistance against a necrotrophic pathogen
Quantitative disease resistance in a wild tomato genotype evolved through species-specific regulatory network rewiring, with an ancient transcription facto
academic.oup.com
October 1, 2025 at 12:26 PM
Reposted by Severin Einspanier
There are no words to describe how excited and honored I am to take on the role. Already had such amazing support from the plant pathology community in Switz and cannot wait to grow the team further and see how far we can get in tackling our fungal foes. Look out for jobs starting in May 2026!
We warmly welcome Dr. Megan McDonald as Associate Professor of Plant Disease Dynamics. Her research on fungal diseases in crops will strengthen our expertise and collaborations across plant sciences. 🌱
At its meeting of 17 and 18 September 2025 and upon application of Joël Mesot, President of ETH Zurich, the ETH Board appointed eight professors. The Board also awarded the title of "Professor of Practice" once.

More info:
September 18, 2025 at 4:23 PM
Reposted by Severin Einspanier
Ich suche eine*n TA für meine Arbeitsgruppe!

Gern weitersagen 🤗🌾

#plantscijob
Sie haben eine Ausbildung als Biologielaborant*in oder Biologisch-technische*r Assistent*in? Und Sie haben
Erfahrungen in der molekularbiologischen Laborarbeit, insbesondere PCR und Klonierungen? Dann haben wir am @leibnizipk.bsky.social ein spannendes Jobangebot!

➡️Alle Infos: tinyurl.com/2rkbby5t
September 18, 2025 at 1:34 PM
Reposted by Severin Einspanier
Pleased to share our new article in Cell Host & Microbe, a collaboration with the group of Zhong Wei at NJAU

Common mycorrhizal networks facilitate plant disease resistance by altering rhizosphere microbiome assembly

Free share link: authors.elsevier.com/c/1lnTD6t8JE...
September 16, 2025 at 11:16 PM